BAC Information

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BAC

Clone NameB6Ng01-033A12
Chromosome3 (Build37)
Map Location 105,592,610 - 105,755,313
singlet/doubletdoublet
Overlap geneRap1a, EG433637, Adora3, I830077J02Rik, Atp5f1
Upstream geneRhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik
Downstream geneWdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033A12.bB6Ng01-033A12.g
ACCDH862197DH862198
length888829
definitionDH862197|Mus musculus domesticus DNA, BAC clone: B6Ng01-033A12, 5' end.DH862198|Mus musculus domesticus DNA, BAC clone: B6Ng01-033A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,754,787 - 105,755,313)(105,592,610 - 105,593,433)
sequence
gaattcattagtgtagtgaccaggtcatgtccagaaaacattttgcagtg
tcctccatatccactagctattagatgcattccatttcttcaagccttga
gccttggaggaggtgatatagatgttacatttagggctgggtaccatcat
gtttcttggctctttggatggttaatgaatcttagaattacctgctgaaa
acaagcttctctaatgaagactaagggtagcactaatctgtggatctaac
ataaatatgcagaaagcactttgtggcactgtattcacttagcaaaggaa
aaaaataataatatcctctcagccatgtggaatttcaagtagatttacag
aaccatgcagtcattcttttctgtggaatacagtcaaatccagtcagaaa
atggttgattgcccctaatagtcataagactattgtacgtatcccccctg
gcaagttcattgttttatatcttttagagttgagctctaggaaaaatgtt
gatcacttttcttcctctctcaacctagaaccttcaggcattttgaaagc
tagccagcagagaaaacggttctcttacttattcaagctagatttctctg
acctgcaaccaaagtgtggttatttcagcaggaggatcctaaccatctcg
ttctggtgctcagtcaagagcaatggaaatagactatttgagagcattgg
gagccttcctgaccaacaactttgtatctaattcttagcacagggatttt
agattttagtttagtaaccttttggctttaagaacaatactatccacgta
tgttgggtacctctgtttaaactgattttaaatatagctttctcaacatc
tttaggtttgagttgaccttccttggtctttttattca
gaattctttcagattgtaggctttcaaaaactggaatgttttatactgtg
atagtgagggtggtttgttgttattttgtcaagctaaagttacaagctaa
agttatctaggaagaagagcattaattgagaacaatacctccattcaaac
tgcctgtaagtctgtaatgtattttcttgattaatgactgatgtaggtgg
gcagatgtcacccttggacaggtggccctgagttgtataagaaagcaggc
taagcaagccaagagaagcaatccacgctcctctgagttcctgtttcagt
tcctgtctgcaagttcctgccttgacttccttctgtgatggaatgtgagc
tcagagttgtaagatgaaataaaccctttcctccccaaactgtgataatg
tctgttactgtatcttaacactagcaagctaagacaaccagtatttactt
cagagacttactatgcagtttaagtggaatgataagacttctaccagcaa
aaaaatattagttcctttctttaagttcccaaggagattacaaaatttat
cagtggtttctaaccttcctatgaaaacacgtagcctctatggattccat
gttcttaaagagcttttctgtaccaagtacatttggtactttgctagtca
gattaaagtaaaggctaatcagaattctcaaatttttagacttaaaaact
aatgtaatttcaatgctaaattttcccccaccacaaacaaacaaagaaaa
tttcacagactgaggaataaaacccattacgctcttacatactaggtaaa
aattctgacattaactataagttaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105754787_105755313
seq2: B6Ng01-033A12.b_402_931 (reverse)

seq1  TGAATAAAAAGACCAAGGAAGGTCAACTCAAA-CTAAAGATGTATGAGAA  49
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TGAATAAAAAGACCAAGGAAGGTCAACTCAAACCTAAAGATGT-TGAGAA  49

seq1  AGCTATA-TTAAAATCTGTTTAAACAGAGGTACCCTACATACGTGGATAG  98
      ||||||| |||||||| |||||||||||||||||| ||||||||||||||
seq2  AGCTATATTTAAAATCAGTTTAAACAGAGGTACCCAACATACGTGGATAG  99

seq1  TATTGTTCTTAAAAGCCAAAGGTTACTAAACT-AAATCTAAAATCCCTGT  147
      |||||||||||||  | ||||||||||||||| |||||||||||||||||
seq2  TATTGTTCTTAAAGCCAAAAGGTTACTAAACTAAAATCTAAAATCCCTGT  149

seq1  GCTAAGAATTAGATACAAAGTTGTTGGTCAGGAAGGCTCCCAGTGCTCTC  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTAAGAATTAGATACAAAGTTGTTGGTCAGGAAGGCTCCCAATGCTCTC  199

seq1  -AATAGTCTATTTCCATTGCTCTTGACTGAGCACCAGAACGAGATGGTTA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTATTTCCATTGCTCTTGACTGAGCACCAGAACGAGATGGTTA  249

seq1  GGATCCTCCTGCTGAAATAACCACACTTTGGTTGCAGGTCAGAGAAATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCCTGCTGAAATAACCACACTTTGGTTGCAGGTCAGAGAAATCT  299

seq1  AGCTTGAATAAGTAAGAGAACCGTTTTCTCTGCTGGCTAGCTTTCAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAATAAGTAAGAGAACCGTTTTCTCTGCTGGCTAGCTTTCAAAAT  349

seq1  GCCTGAAGGTTCTAGGTTGAGAGAGGAAGAAAAGTGATCAACATTTTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGGTTCTAGGTTGAGAGAGGAAGAAAAGTGATCAACATTTTTCC  399

seq1  TAGAGCTCAACTCTAAAAGATATAAAACAATGAACTTGCCAGGGGGGATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCAACTCTAAAAGATATAAAACAATGAACTTGCCAGGGGGGATA  449

seq1  CGTACAATAGTCTTATGACTATTAGGGGCAATCAACCATTTTCTGACTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAATAGTCTTATGACTATTAGGGGCAATCAACCATTTTCTGACTGG  499

seq1  ATTTGACTGTATTCCACAGAAAAGAATGACT  527
      |||||||||||||||||||||||||||||||
seq2  ATTTGACTGTATTCCACAGAAAAGAATGACT  530

seq1: chr3_105592610_105593433
seq2: B6Ng01-033A12.g_68_896

seq1  GAATTCTTTCAGATTGTAGGCTTTCAAAAACTGGAATGTTTTATACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGATTGTAGGCTTTCAAAAACTGGAATGTTTTATACTGTG  50

seq1  ATAGTGAGGGTGGTTTGTTGTTATTTTGTCAAGCTAAAGTTACAAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGGGTGGTTTGTTGTTATTTTGTCAAGCTAAAGTTACAAGCTAA  100

seq1  AGTTATCTAGGAAGAAGAGCATTAATTGAGAACAATACCTCCATTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTAGGAAGAAGAGCATTAATTGAGAACAATACCTCCATTCAAAC  150

seq1  TGCCTGTAAGTCTGTAATGTATTTTCTTGATTAATGACTGATGTAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAAGTCTGTAATGTATTTTCTTGATTAATGACTGATGTAGGTGG  200

seq1  GCAGATGTCACCCTTGGACAGGTGGCCCTGAGTTGTATAAGAAAGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTCACCCTTGGACAGGTGGCCCTGAGTTGTATAAGAAAGCAGGC  250

seq1  TAAGCAAGCCAAGAGAAGCAATCCACGCTCCTCTGAGTTCCTGTTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGCCAAGAGAAGCAATCCACGCTCCTCTGAGTTCCTGTTTCAGT  300

seq1  TCCTGTCTGCAAGTTCCTGCCTTGACTTCCTTCTGTGATGGAATGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGCAAGTTCCTGCCTTGACTTCCTTCTGTGATGGAATGTGAGC  350

seq1  TCAGAGTTGTAAGATGAAATAAACCCTTTCCTCCCCAAACTGTGATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGTAAGATGAAATAAACCCTTTCCTCCCCAAACTGTGATAATG  400

seq1  TCTGTTACTGTATCTTAACACTAGCAAGCTAAGACAACCAGTATTTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTGTATCTTAACACTAGCAAGCTAAGACAACCAGTATTTACTT  450

seq1  CAGAGACTTACTATGCAGTTTAAGTGGAATGATAAGACTTCTACCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTACTATGCAGTTTAAGTGGAATGATAAGACTTCTACCAGCAA  500

seq1  AAAAATATTAGTTCCTTTCTTTAAGTTCCCAAGGAGATTACAAAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTAGTTCCTTTCTTTAAGTTCCCAAGGAGATTACAAAATTTAT  550

seq1  CAGTGGTTTCTAACCTTCCTATGAAAACACGTAGCCTCTATGGATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTTCTAACCTTCCTATGAAAACACGTAGCCTCTATGGATTCCAT  600

seq1  GTTCTTAAAGAGC-TTTCTGTACCAAGTACA-TTGGTACTTTGCTAGTCA  648
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  GTTCTTAAAGAGCTTTTCTGTACCAAGTACATTTGGTACTTTGCTAGTCA  650

seq1  GATT-AAGTAAAGGCTAATCAGAATTCTCAAATTTTTAGACTTAAAAACT  697
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGTAAAGGCTAATCAGAATTCTCAAATTTTTAGACTTAAAAACT  700

seq1  AATGTAA-TTCAATGCTAAGTTCT-CCCCACCACAAACAAACAAAGAAAA  745
      ||||||| ||||||||||| || | |||||||||||||||||||||||||
seq2  AATGTAATTTCAATGCTAAATTTTCCCCCACCACAAACAAACAAAGAAAA  750

seq1  TTTCACAGACTGAGGAATAAAACCCATTACGCTCTTACATACTAGGCAAA  795
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCACAGACTGAGGAATAAAACCCATTACGCTCTTACATACTAGGTAAA  800

seq1  CATTCTGACATTAACTATAAGTTAATGAG  824
       ||||||||||||||||||||||||||||
seq2  AATTCTGACATTAACTATAAGTTAATGAG  829