BAC Information

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BAC

Clone NameB6Ng01-033G06
Chromosome6 (Build37)3 (Build37)
Map Location 8,443,221 - 8,444,21541,058,946 - 41,059,496
singlet/doubletsingletsinglet
Overlap geneA430035B10Rik
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028
Downstream geneGlcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033G06.bB6Ng01-033G06.g
ACCDH862452DH862453
length988783
definitionDH862452|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G06, 5' end.DH862453|Mus musculus domesticus DNA, BAC clone: B6Ng01-033G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,443,221 - 8,444,215)(41,058,946 - 41,059,496)
sequence
gaattcagtccaatcaattagaaattaacaaaacaatggacttcttcatt
gtggctagatttgtgcggtagaaattttaatgacttatgcaaatgtttat
aatattttaccaaatgaatcaaaacccagaaaacaaaaccaactattaag
tgtcatttaagtatctatttgcatatgcatgtatgaaaaccattgggcaa
gatgtagaccagaacattaccagtggtttcttgtgggtactagaatatct
ggggacttttgttctacatttttataaaatgaacgtgtccttacatatat
tgttagaacgctttacacactgcacagacacacatagtgtttcctgaaaa
tgtcttgaaatgtataaataggataataatgtattatgaatacaattata
aggaaagtttattaaatggcatggagcccacagttggcagcaaacttgaa
ctttgcccacattgcaaatgaaattggctcctatgtacttattatgctaa
aatgatcatatgtaactgccagacttcctttaacttttgcctaaatccct
ctattcagaatgcacacagaaaacatcacaatacacagtaccttgtgcaa
gaattgaaataatcataactagctggtcaaagttttttaaaaactcaaaa
gtaaagcaagacttctacagcccttagcacagtgcctagactgtcgtaaa
tgttcagcaggtgttggttgtttgggacagtatgcgtccctgtttgaaga
atgcagcagtagggaatggttgctgatccaaggaactatcagccacctac
tatacagacttcttttaaaatagccgtcaattactaaaggcggagtccaa
aggaatctttgacacatcataatttatatagctcatttcattctccatac
ttatggataacaaagcaagaatttagccatgtataattcagtttttctct
ctggacttagtttgtacaacacaacacaacaaagttgg
gaattctttgtttagctctgtgccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagttcttagtatatattggatattagtcccc
tatcagatttaggattggtaaaaattctttcccaatctgttggtggcctt
tttgtcttattgacagtgtattttgccttacaaaagctttgcaattttat
gacgtcccatttgtcgattctcaatcttacagcaagagccattgctgttc
tgttcaggaatttttccctgtgtccatatctttgaggctttccccacttt
ctcctccataagttttagtgtctctggttttatgtggagatccttgatcc
acttagacttgagctttgtacaaggagataagagtggatcaatttacatt
cttctacatgataccagcaccatttgttgaaaatgctgtctttttttcac
tggatgattttagctcctttgtcaaagatcaagtgaccataggtttgtgg
gttcatttctgggtcttcaattctattctatttatctacctgactgtcac
tgcatgcaccagtaccacgaagtttttatcacaattgctctgtagtacaa
cttgaggtcaggcatggtgattccaccagaggttcttttattgttgagaa
gagtttttgctatcctaggatttttgttattccagattaattttgcaaat
tgctcttctaacccagtgaagaatttgacttggaattttgatggggatta
cattaattctgtagattgcttttggcaagatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8443221_8444215
seq2: B6Ng01-033G06.b_39_1026 (reverse)

seq1  CCAACTTTGTTGTTGTTGTTGTTGTTACAAACCTAAGT-CAGAGGAAGAA  49
      |||||||||||| ||||| ||||| |||||| |||||| |||||  ||||
seq2  CCAACTTTGTTG-TGTTG-TGTTG-TACAAA-CTAAGTCCAGAG--AGAA  44

seq1  AAACTGAATTATACCATGGCTTAATTTCTTGCTTTTGTTATTCATTAAGT  99
      ||||||||||||| |||||| ||| ||||||| |||||||| || |||||
seq2  AAACTGAATTATA-CATGGC-TAAATTCTTGC-TTTGTTATCCA-TAAGT  90

seq1  ATGGAGAATGAAATGAGCTATAT-AATTATGATGTGTCAAAGATTCCTTT  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGGAGAATGAAATGAGCTATATAAATTATGATGTGTCAAAGATTCCTTT  140

seq1  GGACTCCGCCTTTAGTAATTGACGGCTATTTTAAAAGAAGTCTGTATAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCGCCTTTAGTAATTGACGGCTATTTTAAAAGAAGTCTGTATAGT  190

seq1  AGGTGGCTGATAGTTCCTTGGATCAGCAACCATTCCCTACTGCTGCATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTGATAGTTCCTTGGATCAGCAACCATTCCCTACTGCTGCATTC  240

seq1  TTC-AACAGGGACGCATACTGTCCCAAACAACCAACACCTGCTGAACATT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGGGACGCATACTGTCCCAAACAACCAACACCTGCTGAACATT  290

seq1  TACGACAGTCTAGGCACTGTGCTAAGGGCTGTAGAAGTCTTGCTTTACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACAGTCTAGGCACTGTGCTAAGGGCTGTAGAAGTCTTGCTTTACTT  340

seq1  TTGAGTTTTTAAAAAACTTTGACCAGCTAGTTATGATTATTTCAATTCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTTAAAAAACTTTGACCAGCTAGTTATGATTATTTCAATTCTT  390

seq1  GCACAAGGTACTGTGTATTGTGATGTTTTCTGTGTGCATTCTGAATAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGTACTGTGTATTGTGATGTTTTCTGTGTGCATTCTGAATAGAG  440

seq1  GGATTTAGGCAAAAGTTAAAGGAAGTCTGGCAGTTACATATGATCATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGGCAAAAGTTAAAGGAAGTCTGGCAGTTACATATGATCATTTT  490

seq1  AGCATAATAAGTACATAGGAGCCAATTTCATTTGCAATGTGGGCAAAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATAAGTACATAGGAGCCAATTTCATTTGCAATGTGGGCAAAGTT  540

seq1  CAAGTTTGCTGCCAACTGTGGGCTCCATGCCATTTAATAAACTTTCCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGCTGCCAACTGTGGGCTCCATGCCATTTAATAAACTTTCCTTA  590

seq1  TAATTGTATTCATAATACATTATTATCCTATTTATACATTTCAAGACATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATTCATAATACATTATTATCCTATTTATACATTTCAAGACATT  640

seq1  TTCAGGAAACACTATGTGTGTCTGTGCAGTGTGTAAAGCGTTCTAACAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAACACTATGTGTGTCTGTGCAGTGTGTAAAGCGTTCTAACAAT  690

seq1  ATATGTAAGGACACGTTCATTTTATAAAAATGTAGAACAAAAGTCCCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGGACACGTTCATTTTATAAAAATGTAGAACAAAAGTCCCCAG  740

seq1  ATATTCTAGTACCCACAAGAAACCACTGGTAATGTTCTGGTCTACATCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAGTACCCACAAGAAACCACTGGTAATGTTCTGGTCTACATCTT  790

seq1  GCCCAATGGTTTTCATACATGCATATGCAAATAGATACTTAAATGACACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGGTTTTCATACATGCATATGCAAATAGATACTTAAATGACACT  840

seq1  TAATAGTTGGTTTTGTTTTCTGGGTTTTGATTCATTTGGTAAAATATTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTGGTTTTGTTTTCTGGGTTTTGATTCATTTGGTAAAATATTAT  890

seq1  AAACATTTGCATAAGTCATTAAAATTTCTACCGCACAAATCTAGCCACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGCATAAGTCATTAAAATTTCTACCGCACAAATCTAGCCACAA  940

seq1  TGAAGAAGTCCATTGTTTTGTTAATTTCTAATTGATTGGACTGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGTCCATTGTTTTGTTAATTTCTAATTGATTGGACTGAATTC  988

seq1: chr3_41058946_41059496
seq2: B6Ng01-033G06.g_311_851 (reverse)

seq1  CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT  50
      |||||||||||||||||||||||||| | |||| ||||||||||||||||
seq2  CTATCTTGCCAAAAGCAATCTACAGAATTAATGTAATCCCCATCAAAATT  50

seq1  CCAACTC-AATTCTTCAACGAATTTGAAAGAGCAATCTGC-AAATTCATC  98
      |||| || |||||||||  |  || | ||||||||| ||| ||||| |||
seq2  CCAAGTCAAATTCTTCACTGGGTTAG-AAGAGCAATTTGCAAAATTAATC  99

seq1  TGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAG  148
      |||||||||||||| ||||||||||||||||||||||||||  |||| ||
seq2  TGGAATAACAAAAATCCTAGGATAGCAAAAACTCTTCTCAACAATAAAAG  149

seq1  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  198
      |||||||||||||||||||||||||||||| ||| | |||||||||||||
seq2  AACCTCTGGTGGAATCACCATGCCTGACCTCAAGTTGTACTACAGAGCAA  199

seq1  TTGTGATAAAAACTGCATGGTACTGGT--AT--AGTGACAGACAAGCAGA  244
      |||||||||||||| | ||||||||||  ||  |||||||| || | |||
seq2  TTGTGATAAAAACTTCGTGGTACTGGTGCATGCAGTGACAGTCAGGTAGA  249

seq1  CCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTC  294
        ||| |||||||||||||||| |||||| ||| ||||| ||||||||||
seq2  TAAATAGAATAGAATTGAAGACCCAGAAATGAACCCACAAACCTATGGTC  299

seq1  ACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGC  344
      |||||||||| ||||| |||||||||| ||||||||| ||||||||||||
seq2  ACTTGATCTTTGACAAAGGAGCTAAAATCATCCAGTGAAAAAAAGACAGC  349

seq1  ATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAAT  394
      |||||||||||||||||||||             ||||||||||||||||
seq2  ATTTTCAACAAATGGTGCTGG-------------TATCATGTAGAAGAAT  386

seq1  GCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGA  444
      |  ||||||||||||| ||||||||||||| ||| |||| ||||||||||
seq2  GTAAATTGATCCACTCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGA  436

seq1  TCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAA  494
      ||||||| | ||||||||||||||||||||| |||||||| |||||||||
seq2  TCAAGGATCTCCACATAAAACCAGAGACACTAAAACTTATGGAGGAGAAA  486

seq1  GTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAG  544
      |||||| |||||||  ||||||||| |||| |||||||||||||| | ||
seq2  GTGGGG-AAAGCCTCAAAGATATGGACACA-GGGAAAAATTCCTGAACAG  534

seq1  AACAGCA  551
      |||||||
seq2  AACAGCA  541