BAC Information

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BAC

Clone NameB6Ng01-033K01
Chromosome3 (Build37)
Map Location 38,244,843 - 38,308,591
singlet/doubletdoublet
Overlap genenone
Upstream geneFgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K01.bB6Ng01-033K01.g
ACCDH862620DH862621
length1,1581,071
definitionDH862620|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K01, 5' end.DH862621|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,244,843 - 38,246,016)(38,307,515 - 38,308,591)
sequence
gaattcaacttgggtcctctgcaagagcagcaactactgagctgtctctc
tagccccaactggatactgcatagtctctgacactcaaaatcttcttttc
tggctcctcacagcgtctcattcctgtctctgcaccaaactcattccttc
acatctcaatttgcagtcctgcttccctaagaagaccataaactattgat
ggggaagggttacaactaattctgcaggcacactcaataaatctttaaaa
gaaattattatttttccatattaatatttttccatactattattttattt
ttctttttaaaaaagatttatttattttatttatatgagtacatgtgagt
acctgtcttcagacacaccagaagagggcatcagatcccattacagatgg
ttgtgagccaccatgtggttgctgggaattgaacttaggacctctggaag
agcagccagtattcttaaccactgagccatctctccagccctattttatt
tttcaatagcatcaagtagtagcaaggttcattattaggtcaatatatca
ctgaagtgatgtcatataattttacctaccatggaaagaagaaactggag
tgtacgaagcacacactgtataggtcacataatttgaaagatagctgtta
tagctctatcttatagagatatccttggggctgatatcaagttcatggtc
ttgaaacgagaagtagggggccagagagggggaatcactatacaggcaag
ttggcatgactgctcctcaaataacacttcaactgaagagattaagattg
tgttgacatgactaaatatcactgaatgtcactgtgggcattttaaaaat
gcatggggaaaaattttctctcggtttcttacctaataacatgacgagag
actgccaagctggtttcaacgttgagttttcaaatctaatttattcagat
taaatcttaactggtccctctaaaagagttactgttgatgctgtctatag
tattgccacccacccggtgaatcttgcagaattgatgctaacaacttacc
tttaccttatatttggtgttaattaacttttctaatgggaatttgactcg
gtgcaaaacatttcgtgttaaaagagggggacttactttgcagggtttgt
gtcaaaga
gaattctgggaaatagacaggttcgggaatgggagatttgcctcaaatac
agaggaagatgaaacggaagacagttagccaatcacgtagcactcataga
atagagtatctggattactgaggtatgagctagttggggaacacagccaa
ggctgttggcctaggcatttattcatatgtaattcagtcttagagtcatt
atctctaggaacctgggaatgggcggaaaacccacagctacacagagact
ttggaagttgtcccccagcttctgtagacccccatatgggtccttctccc
acacatatatcagaaagtaaccataaaattttatgcctatagaaaacaaa
catagctatcaatgtttctgaggctttttttttttcttcttcttctttct
aaggctgaacaataaggcgttgatgtagcttaactgtggtgtaaaacata
agatgaatcggagggtcatagggagtaaaagtccctagtgaacgatacct
tattttcagttatttttttccctcaaattgggtttgctttgtaaatggga
tacaatgaccattctatagccaattcataatgacaagaaaaaatgacaca
gacacaaaatacatcatatggcacaagccacatactcttgtgaatattac
atgaattctaggctgaaagaaacagggtgaactataagacagaagaccac
agccatatctgtgctgttccatttcaaattaatcgtcacgccacatatga
gacccttacagcaaatagaaacacctgtttatgaggtttgaaacatcatg
taagtaggggacaatgtgatttgaagtaatttgccatctactaaggtttc
tgttcactgataagtactctgacatcatcctccctcatgggtatattgat
aatttttttcagatttggatgatccagttttgggggttagctattatctt
ttattttagacagtttttttattccaaggaacattgagataatagtatgg
agaactctcttcgtttactgggacatttggctatgctattcatcagtgct
gactatactggatgggcatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38244843_38246016
seq2: B6Ng01-033K01.b_37_1194

seq1  GAATTCAACTTGGGTCCTCTGCAAGAGCAGCAACTACTGAGCTGTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGGGTCCTCTGCAAGAGCAGCAACTACTGAGCTGTCTCTC  50

seq1  TAGCCCCAACTGGATACTGCATAGTCTCTGACACTCAAAATCTTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAACTGGATACTGCATAGTCTCTGACACTCAAAATCTTCTTTTC  100

seq1  TGGCTCCTCACAGCGTCTCATTCCTGTCTCTGCACCAAACTCATTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCACAGCGTCTCATTCCTGTCTCTGCACCAAACTCATTCCTTC  150

seq1  ACATCTCAATTTGCAGTCCTGCTTCCCTAAGAAGACCATAAACTATTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAATTTGCAGTCCTGCTTCCCTAAGAAGACCATAAACTATTGAT  200

seq1  GGGGAAGGGTTACAACTAATTCTGCAGGCACACTCAATAAATCTTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGTTACAACTAATTCTGCAGGCACACTCAATAAATCTTTAAAA  250

seq1  GAAATTATTATTTTTCCATATTAATATTTTTCCATACTATTATTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATTATTTTTCCATATTAATATTTTTCCATACTATTATTTTATTT  300

seq1  TTCTTTTTAAAAAAGATTTATTTATTTTATTTATATGAGTACATGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTAAAAAAGATTTATTTATTTTATTTATATGAGTACATGTGAGT  350

seq1  ACCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGG  400

seq1  TTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGAAG  450

seq1  AGCAGCCAGTATTCTTAACCACTGAGCCATCTCTCCAGCCCTATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTATTCTTAACCACTGAGCCATCTCTCCAGCCCTATTTTATT  500

seq1  TTTCAATAGCATCAAGTAGTAGCAAGGTTCATTATTAGGTCAATATATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAGCATCAAGTAGTAGCAAGGTTCATTATTAGGTCAATATATCA  550

seq1  CTGAAGTGATGTCATATAATTTTACCTACCATGGAAAGAAGAAACTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGATGTCATATAATTTTACCTACCATGGAAAGAAGAAACTGGAG  600

seq1  TGTACGAAGCACACACTGTATAGGTCACATAATTTGAAAGATAGCTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGAAGCACACACTGTATAGGTCACATAATTTGAAAGATAGCTGTTA  650

seq1  TAGCTCTATCTTATAGAGATATCCTTGGGGCTGATATCAAGTTCATGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTATCTTATAGAGATATCCTTGGGGCTGATATCAAGTTCATGGTC  700

seq1  TTGAAACGAGAAGTAGGGGGCCAGAGAGGGGGAATCACTATACAGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACGAGAAGTAGGGGGCCAGAGAGGGGGAATCACTATACAGGCAAG  750

seq1  TTGGCATGACTGCTCCTCAAATAACACTTCAACTGAAGAGATTAAGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGACTGCTCCTCAAATAACACTTCAACTGAAGAGATTAAGATTG  800

seq1  TGTTGACATGACTAAATATCACTGAATGTCACTGTGGGCATTTTAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACATGACTAAATATCACTGAATGTCACTGTGGGCATTTTAAAAAT  850

seq1  GCATGGGGAAAAATTTTCTCTCAGGTTTCTTACCTAATAACATGACGAGA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCATGGGGAAAAATTTTCTCTC-GGTTTCTTACCTAATAACATGACGAGA  899

seq1  GACTGCCAAGCTGGTTTCAACGTTGAGTTTTCAAATCTAATTTATTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACTGCCAAGCTGGTTTCAACGTTGAGTTTTCAAATCTAATTTATTCAG-  948

seq1  ATTAAATCTTAACTGGTCCCTCTAAAAAGAGTTACTGTTGATGCTGTCTA  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTAAATCTTAACTGGTCCCTCT-AAAAGAGTTACTGTTGATGCTGTCTA  997

seq1  TAAGTA-TGCCACCCACCCGTGGAGTCTTGCAGAATTGATGCTAACAACT  1049
      | |||| |||||||||||||  || |||||||||||||||||||||||||
seq2  T-AGTATTGCCACCCACCCGGTGAATCTTGCAGAATTGATGCTAACAACT  1046

seq1  TACTTTTACCTTAATATTTTGTTTGTATAATTAAACTTTATCTAAATGGG  1099
      ||| |||||||| |||||| || |   ||||| |||||| |||||  || 
seq2  TACCTTTACCTT-ATATTTGGTGT---TAATT-AACTTT-TCTAATGGGA  1090

seq1  ATTTGACTTCGTTGCAAAAACATTCTGTGTAGAAAGAGGGAGACTTAACT  1149
      ||||||| ||| ||| ||||||||  ||||  |||||||| ||||| |||
seq2  ATTTGAC-TCGGTGC-AAAACATTTCGTGTTAAAAGAGGGGGACTT-ACT  1137

seq1  TTGCAAAGGTGTTTGTGTCAGAAGA  1174
      |||||   | |||||||||| ||||
seq2  TTGCA---GGGTTTGTGTCA-AAGA  1158

seq1: chr3_38307515_38308591
seq2: B6Ng01-033K01.g_65_1134 (reverse)

seq1  AATGCCCCATCCAGTTAATGTCAGCACTGGTTAATTAGCTATAG-CAAAT  49
      |||| ||||||||| ||  |||||||||| | || |||| |||| |||||
seq2  AATG-CCCATCCAG-TATAGTCAGCACTGATGAA-TAGC-ATAGCCAAAT  46

seq1  GTCCCAGGTAAACTGAAGAGGAGTTCTTCATACTATTATCTCAATGTTCC  99
      |||||| |||||| ||||| ||||||| ||||||||||||||||||||||
seq2  GTCCCA-GTAAAC-GAAGA-GAGTTCTCCATACTATTATCTCAATGTTCC  93

seq1  TTGGAAT-ATAAAACTGTTCTAAAAATAAAAGATAATAGCTAACCCCCAA  148
      ||||||| | ||||||| ||| ||||||||||||||||||||||||||||
seq2  TTGGAATAAAAAAACTG-TCT-AAAATAAAAGATAATAGCTAACCCCCAA  141

seq1  AACTGGATCATCCAAATCTGAAAAAAATTATCAATATACCCATGAGGGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATCATCCAAATCTGAAAAAAATTATCAATATACCCATGAGGGAG  191

seq1  GATGATGTCAGAGTACTTATCAGTGAACAGAAACCTAAGTAGATGGCAAA  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGATGTCAGAGTACTTATCAGTGAACAGAAACCTTAGTAGATGGCAAA  241

seq1  TTACTTCAAATCACATTGTCCCCTACTTACATGATGTTTCAAACCTCATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAAATCACATTGTCCCCTACTTACATGATGTTTCAAACCTCATA  291

seq1  AACAGGTGTTTCTATTTGCTGTAAGGGTCTCATATGTGGCGTGACGATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGTTTCTATTTGCTGTAAGGGTCTCATATGTGGCGTGACGATTA  341

seq1  ATTTGAAATGGAACAGCACAGATATGGCTGTGGTCTTCTGTCTTATAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGGAACAGCACAGATATGGCTGTGGTCTTCTGTCTTATAGTT  391

seq1  CACCCTGTTTCTTTCAGCCTAGAATTCATGTAATATTCACAAGAGTATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTTTCTTTCAGCCTAGAATTCATGTAATATTCACAAGAGTATGT  441

seq1  GGCTTGTGCCATATGATGTATTTTGTGTCTGTGTCATTTTTTCTTGTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCCATATGATGTATTTTGTGTCTGTGTCATTTTTTCTTGTCAT  491

seq1  TATGAATTGGCTATAGAATGGTCATTGTATCCCATTTACAAAGCAAACCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTGGCTATAGAATGGTCATTGTATCCCATTTACAAAGCAAACCC  541

seq1  AATTTGAGGGAAAAAAATAACTGAAAATAAGGTATCGTTCACTAGGGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGGGAAAAAAATAACTGAAAATAAGGTATCGTTCACTAGGGACT  591

seq1  TTTACTCCCTATGACCCTCCGATTCATCTTATGTTTTACACCACAGTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCCTATGACCCTCCGATTCATCTTATGTTTTACACCACAGTTAA  641

seq1  GCTACATCAACGCCTTATTGTTCAGCCTTAGAAAGAAGAAGAAGAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCAACGCCTTATTGTTCAGCCTTAGAAAGAAGAAGAAGAAAAAA  691

seq1  AAAAAGCCTCAGAAACATTGATAGCTATGTTTGTTTTCTATAGGCATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCTCAGAAACATTGATAGCTATGTTTGTTTTCTATAGGCATAAA  741

seq1  ATTTTATGGTTACTTTCTGATATATGTGTGGGAGAAGGACCCATATGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGTTACTTTCTGATATATGTGTGGGAGAAGGACCCATATGGGG  791

seq1  GTCTACAGAAGCTGGGGGACAACTTCCAAAGTCTCTGTGTAGCTGTGGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAAGCTGGGGGACAACTTCCAAAGTCTCTGTGTAGCTGTGGGT  841

seq1  TTTCCGCCCATTCCCAGGTTCCTAGAGATAATGACTCTAAGACTGAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCCCATTCCCAGGTTCCTAGAGATAATGACTCTAAGACTGAATTA  891

seq1  CATATGAATAAATGCCTAGGCCAACAGCCTTGGCTGTGTTCCCCAACTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAATAAATGCCTAGGCCAACAGCCTTGGCTGTGTTCCCCAACTAG  941

seq1  CTCATACCTCAGTAATCCAGATACTCTATTCTATGAGTGCTACGTGATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCTCAGTAATCCAGATACTCTATTCTATGAGTGCTACGTGATTG  991

seq1  GCTAACTGTCTTCCGTTTCATCTTCCTCTGTATTTGAGGCAAATCTCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGTCTTCCGTTTCATCTTCCTCTGTATTTGAGGCAAATCTCCCA  1041

seq1  TTCCCGAACCTGTCTATTTCCCAGAATTC  1077
      |||||||||||||||||||||||||||||
seq2  TTCCCGAACCTGTCTATTTCCCAGAATTC  1070