BAC Information

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BAC

Clone NameB6Ng01-033K07
Chromosome3 (Build37)
Map Location 133,390,044 - 133,621,124
singlet/doubletdoublet
Overlap geneEG620205, LOC100039168
Upstream geneA630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K07.bB6Ng01-033K07.g
ACCDH862632DH862633
length8081,030
definitionDH862632|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K07, 5' end.DH862633|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,620,320 - 133,621,124)(133,390,044 - 133,391,086)
sequence
ggaattcaacagcttctgtgagtgatttcacttttgtctaacttttaaat
gcacagtctacatacacagttttgttgttagcttggttggactgagagat
acatagattattaaggcatcccctgggggtctggaagaaggggggcttcc
agagagtcgactacatcatgatgagtctgacctaatcaatggcttttatt
tcattttcaatcctgctttatggtatatgaaaggatgggagatatcttag
gtggagttaacttcagtacctcactaagacagtatcatagcagtgtctca
ttatcttataattcattcagaattctttcggaagtattcactttcctgtt
gatctctctgtctggcttctgttccttgtgtactactccagataataata
ttttgtgatatttttatgttgtagacatcttcttccatttgtcaccctca
attaagtttgtcttttctgccttgagtgaaaaatcttcagttatgatata
gctgaatgtctcatccaatcttgaacatagctggctgttttatttcacag
tattttgtaatatttatcaggcctgattgttttgtacataaaggtctcag
gtgttctttattaattcttgagtcgtgtcattgttggctgtgacagatct
catatttcccacttcgtactccagctggttgctgggagacatagaatgat
atttagtttttataaattttattttatatacaaaaaactttattttttca
tgtttgtggaatttggtaataaattcagttatcatttgttttttgttatg
tttccttt
gaattcaaggtcctttttgatttttgaggacaccacacatgcatttagta
tagatacacacatgcaggcaaaacacatagcataagataaaataaacaga
ataaaaggcattgaaacataacctaatctaggggatttgtttgtatctac
ttgtgttagagaatgtttttgtgtgtccttaaagtcagcagtcacacgct
aaaatttaaattatgcgaatgggccagctgttccctaaactatctaaagc
caatcagtctttgaaaaatattgaagaacttatatacacattttaaaagg
acattcattcagataggtgcttgcaaagattatgtatggggttatattac
aaaaaatatcaccactagcactttgatacactatactatctaccagacag
aaatcagagagggaaacactttcatttatatcactaaaagaatctaaact
tattaatagcctttgggaatattcagaaacttgataaagtaaattataaa
actctacatgatagtatcatgggaagatttgaggaatcagacagatgtac
cttgaaaaataaaattaaatgttttaaaagaagtcatttctgtttatgtt
tgttctctctgcattaagacatcaagaaaaaaataaactctgtttctagt
gaatatggtaaagaacctggcggagcattctaaattccactttgaaggat
ttaccttgtacaattgcagctgaaagaaagctaaagaaacaaaaatatta
tgagggaagattgctctaacagatgtgaaggtctgttattataatgcttg
aataagagccagatgatgccgactaagggaactgattctcagacccaact
gtgttcagggattaacccaggaaaagttggcttttggtcaatgggattaa
aaaacataccatgcttaacacttacatgaaacaatgttccagtgtgtaac
catttgagaggaatgacattcctacatgctctttatttatgtattatatt
tattttaataaaaatttaaccatgtatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133620320_133621124
seq2: B6Ng01-033K07.b_47_853 (reverse)

seq1  AAAGG-AACATAACAAAAA--CAATGATAACTTGAATTTTATTACCAAAT  47
      ||||| |||||||||||||   ||||||||| |||| |||||||||||||
seq2  AAAGGAAACATAACAAAAAACAAATGATAAC-TGAA-TTTATTACCAAAT  48

seq1  TCCACAAACATGAAAAAATAAAGTTTTTTGTATATAAAAT-AAATTTATA  96
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCACAAACATGAAAAAATAAAGTTTTTTGTATATAAAATAAAATTTATA  98

seq1  AAAACTAAATATCATTCTATGTCTCCCAGCAACCAGCTGGAGTACGAAGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAATATCATTCTATGTCTCCCAGCAACCAGCTGGAGTACGAAGT  148

seq1  GGGAAATATGAGATCTGTCACAGCCAACAATGACACGACTCAAGAATTAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATATGAGATCTGTCACAGCCAACAATGACACGACTCAAGAATTAA  198

seq1  TAAAGAACACCTGAGACCTTTATGTACAAAACAATCAGGCCTGATAAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACACCTGAGACCTTTATGTACAAAACAATCAGGCCTGATAAATA  248

seq1  TTACAAAATACTGTGAAATAAAACAGCCAGCTATGTTCAAGATTGGATGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATACTGTGAAATAAAACAGCCAGCTATGTTCAAGATTGGATGA  298

seq1  GACATTCAGCTATATCATAACTGAAGATTTTTCACTCAAGGCAGAAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAGCTATATCATAACTGAAGATTTTTCACTCAAGGCAGAAAAGA  348

seq1  CAAACTTAATTGAGGGTGACAAATGGAAGAAGATGTCTACAACATAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAATTGAGGGTGACAAATGGAAGAAGATGTCTACAACATAAAAA  398

seq1  TATCACAAAATATTATTATCTGGAGTAGTACACAAGGAACAGAAGCCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAAATATTATTATCTGGAGTAGTACACAAGGAACAGAAGCCAGA  448

seq1  CAGAGAGATCAACAGGAAAGTGAATACTTCCGAAAGAATTCTGAATGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATCAACAGGAAAGTGAATACTTCCGAAAGAATTCTGAATGAAT  498

seq1  TATAAGATAATGAGACACTGCTATGATACTGTCTTAGTGAGGTACTGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATAATGAGACACTGCTATGATACTGTCTTAGTGAGGTACTGAAG  548

seq1  TTAACTCCACCTAAGATATCTCCCATCCTTTCATATACCATAAAGCAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCACCTAAGATATCTCCCATCCTTTCATATACCATAAAGCAGGA  598

seq1  TTGAAAATGAAATAAAAGCCATTGATTAGGTCAGACTCATCATGATGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGAAATAAAAGCCATTGATTAGGTCAGACTCATCATGATGTAG  648

seq1  TCGACTCTCTGGAAGCCCCCCTTCTTCCAGACCCCCAGGGGATGCCTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTCTCTGGAAGCCCCCCTTCTTCCAGACCCCCAGGGGATGCCTTAA  698

seq1  TAATCTATGTATCTCTCAGTCCAACCAAGCTAACAACAAAACTGTGTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATGTATCTCTCAGTCCAACCAAGCTAACAACAAAACTGTGTATG  748

seq1  TAGACTGTGCATTTAAAAGTTAGACAAAAGTGAAATCACTCACAGAAGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGCATTTAAAAGTTAGACAAAAGTGAAATCACTCACAGAAGCT  798

seq1  GTTGAATTC  805
      |||||||||
seq2  GTTGAATTC  807

seq1: chr3_133390044_133391086
seq2: B6Ng01-033K07.g_71_1100

seq1  GAATTCAAGGTCCATTTTGATTTTTGAGGACACCACACATGCATTTAGTA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCCTTTTTGATTTTTGAGGACACCACACATGCATTTAGTA  50

seq1  TAGATACACACATGCAGGCAAAACACATAGCATAAGATAAAATAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACACACATGCAGGCAAAACACATAGCATAAGATAAAATAAACAGA  100

seq1  ATAAAAGGCATTGAAACATAACCTAATCTAGGGGATTTGTTTGTATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGCATTGAAACATAACCTAATCTAGGGGATTTGTTTGTATCTAC  150

seq1  TTGTGTTAGAGAATGTTTTTGTGTGTCCTTAAAGTCAGCAGTCACACGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAGAGAATGTTTTTGTGTGTCCTTAAAGTCAGCAGTCACACGCT  200

seq1  AAAATTTAAATTATGCGAATGGGCCAGCTGTTCCCTAAACTATCTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAATTATGCGAATGGGCCAGCTGTTCCCTAAACTATCTAAAGC  250

seq1  CAATCAGTCTTTGAAAAATATTGAAGAACTTATATACACATTTTAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTCTTTGAAAAATATTGAAGAACTTATATACACATTTTAAAAGG  300

seq1  ACATTCATTCAGATAGGTGCTTGCAAAGATTATGTATGGGGTTATATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTCAGATAGGTGCTTGCAAAGATTATGTATGGGGTTATATTAC  350

seq1  AAAAAATATCACCACTAGCACTTTGATACACTATACTATCTACCAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCACCACTAGCACTTTGATACACTATACTATCTACCAGACAG  400

seq1  AAATCAGAGAGGGAAACACTTTCATTTATATCACTAAAAGAATCTAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAGAGGGAAACACTTTCATTTATATCACTAAAAGAATCTAAACT  450

seq1  TATTAATAGCCTTTGGGAATATTCAGAAACTTGATAAAGTAAATTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGCCTTTGGGAATATTCAGAAACTTGATAAAGTAAATTATAAA  500

seq1  ACTCTACATGATAGTATCATGGGAAGATTTGAGGAATCAGACAGATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACATGATAGTATCATGGGAAGATTTGAGGAATCAGACAGATGTAC  550

seq1  CTTGAAAAATAAAATTAAATGTTTTAAAAGAAGTCATTTCTGTTTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAATAAAATTAAATGTTTTAAAAGAAGTCATTTCTGTTTATGTT  600

seq1  TGTTCTCTCTGCATTAAGACATCAAGAAAAAAATAAACTCTGTTTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCTGCATTAAGACATCAAGAAAAAAATAAACTCTGTTTCTAGT  650

seq1  GAATATGGTAAAGAACCTGGCGGAGCATTCTAAATTCCACTTTGAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGTAAAGAACCTGGCGGAGCATTCTAAATTCCACTTTGAAGGAT  700

seq1  TTACCTTGTACAATTGCAGCTGAAAGAAAGCTAAAGAAACAAAAATATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTACAATTGCAGCTGAAAGAAAGCTAAAGAAACAAAAATATTA  750

seq1  TGAGGGAAGATTGCTCTAACAGATGTGAAGGTCTGTTATTATAATGC-TG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAGGGAAGATTGCTCTAACAGATGTGAAGGTCTGTTATTATAATGCTTG  800

seq1  AATAAGAGCCAGATGATGCCGACTAAGGGAACTGATTCTCAGACCCAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGCCAGATGATGCCGACTAAGGGAACTGATTCTCAGACCCAACT  850

seq1  GTGTTCAGGGATTTAACCCAGGAAAAAGTTGGCTTTTGGATCAATGGGAT  899
      ||||||||||| |||||||||| |||||||||||||||| ||||||||| 
seq2  GTGTTCAGGGA-TTAACCCAGG-AAAAGTTGGCTTTTGG-TCAATGGGA-  896

seq1  TTAAAAAACAATACCATGCTTAACACATACATGAAACAATGTCCCAGTGT  949
      ||||||||| |||||||||||||||| ||||||||||||||| |||||||
seq2  TTAAAAAAC-ATACCATGCTTAACACTTACATGAAACAATGTTCCAGTGT  945

seq1  GTAACCATTTGAGAGGAAATGACATTCCTACAATGCTCTTTATTTTTATG  999
      |||||||||||||||| |||||||||||||| ||||||||||  ||||||
seq2  GTAACCATTTGAGAGG-AATGACATTCCTAC-ATGCTCTTTA--TTTATG  991

seq1  TATTTATATTTATTTTTAATTAAAAATTTTATACCATGTATCTT  1043
      || |||||||||||||  | |||||||||   ||||||||||||
seq2  TA-TTATATTTATTTT--AATAAAAATTT--AACCATGTATCTT  1030