BAC Information

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BAC

Clone NameB6Ng01-033N07
Chromosome3 (Build37)
Map Location 41,058,831 - 41,059,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033N07.bB6Ng01-033N07.g
ACCDH862772DH862773
length935909
definitionDH862772|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N07, 5' end.DH862773|Mus musculus domesticus DNA, BAC clone: B6Ng01-033N07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaaattggccatattatgggtcacattaacaggtctcaacaga
tacaagaaggttgaaataatcccatgcatcttatcagatcaccacagact
atggctggttttcaataacaatataaacaacaaaaagcccacatacacat
ggaagctaaacaatgctctactcaatgataacttggtcaaggaagaaatt
atgaaagaaagaaatttgttggggctggcctgcagctctcatgtctgggt
tcaagcctggaatgcatcttggaactgaaagaaaagagggaatctaggcg
ggtaaacagagaaatggagtcaagactgtattctgatcaagactcaactt
taatgtaggcaaacacgctttataaagaagaggggaggcccattcccagt
cacacaaagttcctttgaagttgtcagatcagccttttagtaggaaccca
ggaaaatcacagttccaagctaactccagtagatcttggagaactggttt
ggcctcaggcaggtagcaggtagtggcacatcaaaggagagtgatgagaa
gcagcacagcaggtggctctgcctaagtggcagatggtcacagtcagcct
tgctaggctggaaggaggtaacagaaattaaagactttttagaatttaat
gaaaatgaaggcacaacatatccaaacttatggaacacaatgaaagcaaa
tgctaaaaggaaaactcacagctctgagtgcctccaaaagaaactggaga
gagcatacactagcagcttgacagcacatctgaaagctctagaacaaaaa
gaagcaatctcacccaagaggagtagacagtaagaaataatcaaactcag
agctaaaatcaaccaatagaaccaaatgacctatacggagaatcacaaac
cagagctattcttttgagaaataacaaataaacct
gaattctttgtttaccactgagccccatttattaaatggggctatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgactatgtcttttaccttgcagaagctttgcaatttt
attaggtcccatttgtcgattctcgatcttacagcacaagctattcctgt
tctattcaggaattttttcccctgtactcataacttcaaggcttttccct
actttctcctctataactttcagtgtctctggtttatgtggagttcctta
atccacttagatttgaccttaatacaaggagataggaatggatcaatttg
cattcttctacatgataaccgccagttgtgccagcaccattttttgaaat
gtgatcttttttccactggatggtttttgctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccatttt
tctatttgtctgttgctataccagtactatgcagttttttcacaattgtt
ctgtagtacagttttaggtcaggcatggtgattccaccagaggttctttt
tatccttgagaagagtttttgctatcctaagttttttgttattccagatg
aatttgcagattgccctttctagtttcgttgaagaatttgagttggaatt
ttgatggggattgcattgattctgtagattgctttctgcaagataccatt
ttttactatattgatcccgccaatcccatgagcatgggagatctttccat
cttctgatatcttcttaatttctttctgtcgagatttgaagtctatcata
cagatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058831_41059398
seq2: B6Ng01-033N07.g_412_978 (reverse)

seq1  AAAGATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGA  50
      |||||||||||||| |   ||||||| ||||   ||||||||||| ||||
seq2  AAAGATCTGTATGATA--GACTTCAAATCTCGACAGAAAGAAATT-AAGA  47

seq1  AGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT-GGATTGGCAGGATC  99
      |||| |||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGATATCAGAAGATGGAAAGATCTCCCATGCTCATGGGATTGGCGGGATC  97

seq1  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  149
      || || |||||||  | ||||||||  ||||||||||||||| |||||||
seq2  AATATAGTAAAAAATGGTATCTTGCAGAAAGCAATCTACAGAATCAATGC  147

seq1  AATCCCCATCAAAATTCCAACTC-AATTCTTCAACG-AATTTGAAAGAGC  197
      ||||||||||||||||||||||| |||||||||||| || | ||||| ||
seq2  AATCCCCATCAAAATTCCAACTCAAATTCTTCAACGAAACTAGAAAGGGC  197

seq1  AATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTC  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATCTGCAAATTCATCTGGAATAACAAAAAACTTAGGATAGCAAAAACTC  247

seq1  TTCTCAAGGAT-AACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAA  296
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGATAAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAA  297

seq1  GCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTG  346
       || ||||||||| ||||||||| ||||||||||| ||||||||||||  
seq2  ACTGTACTACAGAACAATTGTGA-AAAAACTGCATAGTACTGGTATAGCA  346

seq1  ACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCA  396
      ||||||||  |||  |||||||||||||||||||| |||||| ||| |||
seq2  ACAGACAAATAGAAAAATGGAATAGAATTGAAGACCCAGAAATGAACCCA  396

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  446
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  CACACCTATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAGTG  446

seq1  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAT  496
      |||||||||   || |||||| |||||||||||||||||||||  |||||
seq2  GAAAAAAGATCACA-TTTCAAAAAATGGTGCTGGCACAACTGGCGGTTAT  495

seq1  CATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTC  546
      ||||||||||||||| |||||||||| ||||||||||||||| |||||||
seq2  CATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTATTAAGGTC  545

seq1  AAATCTAAGTGGATCAAGGAAC  568
      |||||||||||||| |||||||
seq2  AAATCTAAGTGGATTAAGGAAC  567