BAC Information

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BAC

Clone NameB6Ng01-033O01
Chromosome3 (Build37)
Map Location 152,997,334 - 153,110,296
singlet/doubletdoublet
Overlap geneSt6galnac3
Upstream geneC030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O01.bB6Ng01-033O01.g
ACCDH862806DH862807
length526413
definitionDH862806|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O01, 5' end.DH862807|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,109,772 - 153,110,296)(152,997,334 - 152,997,752)
sequence
gaattctgtcctatgttacagtgtttgattattggtttcatatgcattgg
ctgaactgaagtgctccgtctctgtgatttctaccctttctgtgaattgt
atactggcatattattatgtgttctctagggagatgcaaacaaatcccca
gatagggatctgacagcagaccaaaggccagcggggaacagatggactta
ctggggttgcttacaagaccatggttgaggggtttcttgctggagcagaa
atgacttcaaggcagctgtggccccagccgctgtcaccaccctgaaggtt
tactcctggtagcatcccctctttccagtagaccttaggtgcatgccacc
ctcccaagttgcctgtaaaagggtagagtgtgatactgtagcaacagtct
cacacgggatctagtcttctaactacccatccccctccgcatccttcctg
tgtggtgtggtcacagcaaagactcaggttgtcatccagagccagagctg
tctctgactgtatgcgttgaccaagc
acttatctccaactattccagagatgactcctctgagaatcccaaataag
gcttattaacaatcatggacaggtctcccaaagaaggcagaccatctggc
ccctttggcaatgatccaaattgtacactttaaaaatgaatcaccaccca
aataaatgagaaataaagtaaagactactgaacttgccagttcctttatg
catatgaagaagtgttagcctacagactggctcactctgtcacaaggaag
gctcccacctgagccacaaatgagccagccttggagggcagcgacttctg
ggtacagacatatggaagggtcatttgtttctcatttgctcgacagataa
gaatatggaaacagtctcggcccatttgtttgatgggcctcctaagccag
tggtaaacaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153109772_153110296
seq2: B6Ng01-033O01.b_34_559 (reverse)

seq1  GCTTGGTCAACGCATACAGTCAGAGACAGCTCTGGCTCTGGATGACAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCAACGCATACAGTCAGAGACAGCTCTGGCTCTGGATGACAACC  50

seq1  TGAGTCTTTGCTGTGACCACACCACACAGGAAGGATGCGGAGGGGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTTGCTGTGACCACACCACACAGGAAGGATGCGGAGGGGGATGG  100

seq1  GTAGTTAGAAGACTAGATCCCGTGTGAGACTGTTGCTACAGTATCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGAAGACTAGATCCCGTGTGAGACTGTTGCTACAGTATCACACT  150

seq1  CTACCCTTTTACAGGCAACTTGGGAGGGTGGCATGCACCTAAGGTCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTTACAGGCAACTTGGGAGGGTGGCATGCACCTAAGGTCTACT  200

seq1  GGAAAGAGGGGATGCTACCAGGAGTAAACCTTCAGGGTGGTGACAGCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGGGATGCTACCAGGAGTAAACCTTCAGGGTGGTGACAGCGGC  250

seq1  TGGGGCCACAGCTGCCTTGAAGTCATTTCTGCTCCAGCAAGAAACCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCACAGCTGCCTTGAAGTCATTTCTGCTCCAGCAAGAAACCCCTC  300

seq1  AACCATGGTCTTGTAAGCAACCCCAGTAAGTCCATCTGTTCCCCGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGGTCTTGTAAGCAACCCCAGTAAGTCCATCTGTTCCCCGCTGGC  350

seq1  CTTTGGTCTGCTGTCAGATCCCTATCTGGGGATTTGTTTGCATCTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTGCTGTCAGATCCCTATCTGGGGATTTGTTTGCATCTCCCTA  400

seq1  GAGAACACATAATAATATGCCAGTATACAATTCACAGAAAGGGTAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACATAATAATATGCCAGTATACAATTCACAGAAAGGGTAGAAAT  450

seq1  CACAGAGACGGAGCACTTCAGTTCAGCCAATGCATATGAAACC-ATAATC  499
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACAGAGACGGAGCACTTCAGTTCAGCCAATGCATATGAAACCAATAATC  500

seq1  AAACACTGTAACATAGGACAGAATTC  525
      ||||||||||||||||||||||||||
seq2  AAACACTGTAACATAGGACAGAATTC  526

seq1: chr3_152997334_152997752
seq2: B6Ng01-033O01.g_63_481

seq1  GAATTCACTTATCTCCAACTATTCCAGAGATGACTCCTCTGAGAATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATCTCCAACTATTCCAGAGATGACTCCTCTGAGAATCCCA  50

seq1  AATAAGGCTTATTAACAATCATGGACAGGTCTCCCAAAGAAGGCAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCTTATTAACAATCATGGACAGGTCTCCCAAAGAAGGCAGACCA  100

seq1  TCTGGCCCCTTTGGCAATGATCCAAATTGTACACTTTAAAAATGAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCCTTTGGCAATGATCCAAATTGTACACTTTAAAAATGAATCAC  150

seq1  CACCCAAATAAATGAGAAATAAAGTAAAGACTACTGAACTTGCCAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAATAAATGAGAAATAAAGTAAAGACTACTGAACTTGCCAGTTCC  200

seq1  TTTATGCATATGAAGAAGTGTTAGCCTACAGACTGGCTCACTCTGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCATATGAAGAAGTGTTAGCCTACAGACTGGCTCACTCTGTCACA  250

seq1  AGGAAGGCTCCCACCTGAGCCACAAATGAGCCAGCCTTGGAGGGCAGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCTCCCACCTGAGCCACAAATGAGCCAGCCTTGGAGGGCAGCGA  300

seq1  CTTCTGGGTACAGACATATGGAAGGGTCATTTGTTTCTCATTTGCTCGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTACAGACATATGGAAGGGTCATTTGTTTCTCATTTGCTCGAC  350

seq1  AGATAAGAATATGGAAACAGTCTCGGCCCATTTGTTTGATGGGCCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAATATGGAAACAGTCTCGGCCCATTTGTTTGATGGGCCTCCTA  400

seq1  AGCCAGTGGTAAACAAAGC  419
      |||||||||||||||||||
seq2  AGCCAGTGGTAAACAAAGC  419