BAC Information

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BAC

Clone NameB6Ng01-034A09
Chromosome3 (Build37)
Map Location 27,943,954 - 28,084,223
singlet/doubletdoublet
Overlap genePld1
Upstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A09.bB6Ng01-034A09.g
ACCDH862902DH862903
length972280
definitionDH862902|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A09, 5' end.DH862903|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,083,244 - 28,084,223)(27,943,954 - 27,944,233)
sequence
gaattctgctgaccaaacagataaacatggtctatgtgaggaaaggcccg
gtcaaagatggatctgattaactatggaggttctatgtatgcaattaaga
caattccaggagccacacaaaaaagcaatttaataatcactccttccttc
cttccttccttcctctaccctcccttccacctccccctctcccttccttt
cccctcctccttcctttcctttctcattcttttcctcatttgctttttaa
gatttatgtttaaggaggagtggtggcacctcagaggcatgtaaaatctc
tgagtccaaagccaacctggtctacacagtgagcttcaggacagccaggg
caacacaaaaccaaaacaaacacacacacaaacaacaacaaataaaactt
gacccccgcccccaagagattgattatgagcaggcggctgaagccaacgt
ggagggccattgtgagccacccagatgggtactggaaatcaaattctcat
cctttttaagaacaagtacttctaattctaagctgtcactgttgtttggt
ttgtgaccaggagctcactatgcagcccttagctgatccagaactggcta
tgtagaccgggctgtcctctaactactggccatccttccatcccagcctg
agcgctgggatcatgacatgccctgggctcctcttctttctcaaataatt
agtgttcctctagtaataaagtaggcctcctactgtgaaacaaaaaaggg
agcaaatagtcctggctcctagatttgctgtctgtgacagtttgatggag
agtgctccccaccccccatggactcacacaactgaatgcttaatcatcag
ggaatagcattatttgagaagattaggaagagtggccttgtggaagaagg
tgtcattggggtttggctatgagattcaaagtccaagtagcccggttccc
actccctctcttctagcctgca
agagtcaaagtgggaaggaaagagacagaaacgaaatatggacttcggat
cgataatctttcaaggtagaatttttttaatgtttaaaacgtattttttc
ccaagtctctttaaagttaaaattttaacccaaaagaaggaaactaggtt
gaaatgttagtagttgttgcttgcagctcatccttgattagaagtaacag
aacttacctttgctgttgtatgtgtttttaaagattttaaagattcattt
tattttggatggtggtgtagtatgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28083244_28084223
seq2: B6Ng01-034A09.b_48_1019 (reverse)

seq1  TGCAGGCAGAAAGAGAGGGAGTTGGGGAACCGGGGCTACTTGGACTTTTG  50
      |||||||   ||||||||||||  ||||||| ||||||||||||||||  
seq2  TGCAGGCTAGAAGAGAGGGAGT--GGGAACC-GGGCTACTTGGACTTT--  45

seq1  AAATCTCATAGCCCAACCCCAATGACACCCTTCTTCCAACAAGGCCACTC  100
       |||||||||||| ||||||||||||| ||||||||| ||||||||||||
seq2  GAATCTCATAGCCAAACCCCAATGACA-CCTTCTTCC-ACAAGGCCACTC  93

seq1  TTCCTAATCCTTCTCAAATAATGCTATTCCCTGATGATTAAGCATTCAGT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAT-CTTCTCAAATAATGCTATTCCCTGATGATTAAGCATTCAGT  142

seq1  TGTGTGAGTCCATGGGGGGTGGGGAGCACTCTCCATCAAACTGTCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCCATGGGGGGTGGGGAGCACTCTCCATCAAACTGTCACAGA  192

seq1  CAGCAAATCTAGGAGCCAGGACTATTTGCTCCCTTTTTTGTTTCACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATCTAGGAGCCAGGACTATTTGCTCCCTTTTTTGTTTCACAGTA  242

seq1  GGAGGCCTACTTTATTACTAGAGGAACACTAATTATTTGAGAAAGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTACTTTATTACTAGAGGAACACTAATTATTTGAGAAAGAAGAG  292

seq1  GAGCCCAGGGCATGTCATGATCCCAGCGCTCAGGCTGGGATGGAAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGGCATGTCATGATCCCAGCGCTCAGGCTGGGATGGAAGGATG  342

seq1  GCCAGTAGTTAGAGGACAGCCCGGTCTACATAGCCAGTTCTGGATCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGTTAGAGGACAGCCCGGTCTACATAGCCAGTTCTGGATCAGCT  392

seq1  AAGGGCTGCATAGTGAGCTCCTGGTCACAAACCAAACAACAGTGACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGCATAGTGAGCTCCTGGTCACAAACCAAACAACAGTGACAGCT  442

seq1  TAGAATTAGAAGTACTTGTTCTTAAAAAGGATGAGAATTTGATTTCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAGAAGTACTTGTTCTTAAAAAGGATGAGAATTTGATTTCCAGT  492

seq1  ACCCATCTGGGTGGCTCACAATGGCCCTCCACGTTGGCTTCAGCCGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTGGGTGGCTCACAATGGCCCTCCACGTTGGCTTCAGCCGCCTG  542

seq1  CTCATAATCAATCTCTTGGGGGCGGGGGTCAAGTTTTATTTGTTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATCAATCTCTTGGGGGCGGGGGTCAAGTTTTATTTGTTGTTGTT  592

seq1  TGTGTGTGTGTTTGTTTTGGTTTTGTGTTGCCCTGGCTGTCCTGAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTGTTTTGGTTTTGTGTTGCCCTGGCTGTCCTGAAGCTC  642

seq1  ACTGTGTAGACCAGGTTGGCTTTGGACTCAGAGATTTTACATGCCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGACCAGGTTGGCTTTGGACTCAGAGATTTTACATGCCTCTGA  692

seq1  GGTGCCACCACTCCTCCTTAAACATAAATCTTAAAAAGCAAATGAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACCACTCCTCCTTAAACATAAATCTTAAAAAGCAAATGAGGAAA  742

seq1  AGAATGAGAAAGGAAAGGAAGGAGGAGGGGAAAGGAAGGGAGAGGGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAAAGGAAAGGAAGGAGGAGGGGAAAGGAAGGGAGAGGGGGAG  792

seq1  GTGGAAGGGAGGGTAGAGGAAGGAAGGAAGGAAGGAAGGAGTGATTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGGAGGGTAGAGGAAGGAAGGAAGGAAGGAAGGAGTGATTATTA  842

seq1  AATTGCTTTTTTGTGTGGCTCCTGGAATTGTCTTAATTGCATACATAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTTTTGTGTGGCTCCTGGAATTGTCTTAATTGCATACATAGAA  892

seq1  CCTCCATAGTTAATCAGATCCATCTTTGACCGGGCCTTTCCTCACATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGTTAATCAGATCCATCTTTGACCGGGCCTTTCCTCACATAGA  942

seq1  CCATGTTTATCTGTTTGGTCAGCAGAATTC  980
      ||||||||||||||||||||||||||||||
seq2  CCATGTTTATCTGTTTGGTCAGCAGAATTC  972

seq1: chr3_27943954_27944233
seq2: B6Ng01-034A09.g_77_356

seq1  AGAGTCAAAGTGGGAAGGAAAGAGACAGAAACGAAATATGGACTTCGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAAGTGGGAAGGAAAGAGACAGAAACGAAATATGGACTTCGGAT  50

seq1  CGATAATCTTTCAAGGTAGAATTTTTTTAATGTTTAAAACGTATTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAATCTTTCAAGGTAGAATTTTTTTAATGTTTAAAACGTATTTTTTC  100

seq1  CCAAGTCTCTTTAAAGTTAAAATTTTAACCCAAAAGAAGGAAACTAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTCTTTAAAGTTAAAATTTTAACCCAAAAGAAGGAAACTAGGTT  150

seq1  GAAATGTTAGTAGTTGTTGCTTGCAGCTCATCCTTGATTAGAAGTAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAGTAGTTGTTGCTTGCAGCTCATCCTTGATTAGAAGTAACAG  200

seq1  AACTTACCTTTGCTGTTGTATGTGTTTTTAAAGATTTTAAAGATTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCTTTGCTGTTGTATGTGTTTTTAAAGATTTTAAAGATTCATTT  250

seq1  TATTTTGGATGGTGGTGTAGTATGGGGGTG  280
      ||||||||||||||||||||||||||||||
seq2  TATTTTGGATGGTGGTGTAGTATGGGGGTG  280