BAC Information

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BAC

Clone NameB6Ng01-034B01
Chromosome3 (Build37)
Map Location 122,761,758 - 122,891,337
singlet/doubletdoublet
Overlap geneSynpo2
Upstream geneAbca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B01.bB6Ng01-034B01.g
ACCDH862934DH862935
length8931,140
definitionDH862934|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B01, 5' end.DH862935|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,761,758 - 122,762,652)(122,890,201 - 122,891,337)
sequence
gaattcatttgtatatcttttatgaagatagacaagaaagccaagggttt
agacaccatgagaagcttgctgagaggcccacatgctataaagtcagaat
ataaaagggttatacctgcagcccaagggagagccaaaaataaacttgct
tgtactatgtacattgcccctccctggagatattacctgtgtttaacctc
tggccaataaagccaggtgtggttcacacttgtaattccagctgctcagg
agctaaggctatcacacattcaaagattgtttggtatacatagcaactca
gaggccagcctgcctgtgcaatttagcaagactccacatcaagcaaaagt
aagagagagatgagcttggtggtggcgttcctgtccagtatgcacaataa
gcagggtatataaaaaagtctctttagaacttctcactattaactagttt
tgtatgtgtttgaagactggctttccacattctcctgaagctgggagaat
ctgaagacagtaggtattttcaagtgatcctaagccaacactgcaaagac
acttaaaagaaacaaacgggaactccatgtatagaaggccatttttcctc
aggtcttaaagacgaggaaaggctcaagaaagatgagtagttcattaaaa
tcctacacgtaccttcagattctggcttcttcagcagatggggtccatta
cagaaagctccagctggtgactaactgaccccacctgacatatctacacc
actatactgtatgatccctatacctgagccatagggaccatcagagaaga
gagggtgaaaactgtagagcagggaccatagtgagagctgaagagagctt
tttttatgtgggacgggaagctatagtcaggggtgacccttga
gaattctggctcacctcgggataaatgatgctaacacagggcctggtgct
gctgccctcggttggtagcttcctgttgttgagcagaaggttgaggaaga
ggagactcacacctgtgaggagtaactttaacagcacatctacagaagaa
gccggacacagatacttcaagtctccacagccacagtgtgtacgcaatat
gtgttttgaatttgttacctctctagcccttcacataggactgtccccac
tgggtgctcagtgcttaatttttgagattctaaataatttggaagtgtca
agttccatatgcggagctcattttattttaaagggaattcttagggaaac
agaagaacaggcgtccgtgaggatgccgtgttcagatccgctctgtaatc
tgaacacacagctctctctttactgtgagtgtatcagtgacagcctccca
ggattgaaatgtgaagcaagccctaaaggaaatctgaccaacagacttcc
ccacagctgttgctgggcgacagaattctttctttctcctctttcttcct
gcctgctacacaatcccatcagttccaactagaaaattccaaggaaactt
ggacttacaacacgccatcgccaacaacagctaaatctgtggtaacattt
tcttctcttcctggaatatctactctgaagctagctctgctaaggcttgg
aagaaaaaatctgcagggagacgacgagagctactgttttcctcttggct
ctcagggtcttaggattctacgatgctgctgctgtgttcctcggtcacca
ggcaagctgtcttctcccaccttcactgctgtgggagcctaggctcattt
gcagccttcggggcttctgcatactggactctccccacctcagcatctgt
ttccgacaataaccaggctgtagcatgccgtaagagaataactgattttc
tggaaactcttccccaggttttctctttcactgcagagaaacctgatctt
ccttgaggcctgcaagcttgcttggtgtgtccaggcacaagtctctcatt
ttctggtggctcaaattggcagacacccctagctttctttttttttcacc
tacctagattctctttctggccttgggcgatttatctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122761758_122762652
seq2: B6Ng01-034B01.b_41_933

seq1  GAATTCATTTGTATATCTTTTATGAAGATAGACAAGAAAGCCAAGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTATATCTTTTATGAAGATAGACAAGAAAGCCAAGGGTTT  50

seq1  AGACACCATGAGAAGCTTGCTGAGAGGCCCACATGCTATAAAGTCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATGAGAAGCTTGCTGAGAGGCCCACATGCTATAAAGTCAGAAT  100

seq1  ATAAAAGGGTTATACCTGCAGCCCAAGGGAGAGCCAAAAATAAACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGGTTATACCTGCAGCCCAAGGGAGAGCCAAAAATAAACTTGCT  150

seq1  TGTACTATGTACATTGCCCCTCCCTGGAGATATTACCTGTGTTTAACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATGTACATTGCCCCTCCCTGGAGATATTACCTGTGTTTAACCTC  200

seq1  TGGCCAATAAAGCCAGGTGTGGTTCACACTTGTAATTCCAGCTGCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATAAAGCCAGGTGTGGTTCACACTTGTAATTCCAGCTGCTCAGG  250

seq1  AGCTAAGGCTATCACACATTCAAAGATTGTTTGGTATACATAGCAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGCTATCACACATTCAAAGATTGTTTGGTATACATAGCAACTCA  300

seq1  GAGGCCAGCCTGCCTGTGCAATTTAGCAAGACTCCACATCAAGCAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGCCTGTGCAATTTAGCAAGACTCCACATCAAGCAAAAGT  350

seq1  AAGAGAGAGATGAGCTTGGTGGTGGCGTTCCTGTCCAGTATGCACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGATGAGCTTGGTGGTGGCGTTCCTGTCCAGTATGCACAATAA  400

seq1  GCAGGGTATATAAAAAAGTCTCTTTAGAACTTCTCACTATTAACTAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTATATAAAAAAGTCTCTTTAGAACTTCTCACTATTAACTAGTTT  450

seq1  TGTATGTGTTTGAAGACTGGCTTTCCACATTCTCCTGAAGCTGGGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTTGAAGACTGGCTTTCCACATTCTCCTGAAGCTGGGAGAAT  500

seq1  CTGAAGACAGTAGGTATTTTCAAGTGATCCTAAGCCAACACTGCAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGTAGGTATTTTCAAGTGATCCTAAGCCAACACTGCAAAGAC  550

seq1  ACTTAAAAGAAACAAACGGGAACTCCATGTATAGAAGGCCATTTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGAAACAAACGGGAACTCCATGTATAGAAGGCCATTTTTCCTC  600

seq1  AGGTCTTAAAGACGAGGAAAGGCTCAAGAAAGATGAGTAGTTCATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTAAAGACGAGGAAAGGCTCAAGAAAGATGAGTAGTTCATTAAAA  650

seq1  TCCTACACGTACCTTCAGATTCTGGCTTCTTCAGCAGATGGGGTCCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACGTACCTTCAGATTCTGGCTTCTTCAGCAGATGGGGTCCATTA  700

seq1  CAGAAAGCTCCAGCTGGTGACTAACTGACCCCACCTGACATATCTACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTCCAGCTGGTGACTAACTGACCCCACCTGACATATCTACACC  750

seq1  ACTATACTGTATGATCCCTATACCTGAGCCATAGGGACCATCAGAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACTGTATGATCCCTATACCTGAGCCATAGGGACCATCAGAGAAGA  800

seq1  GAGGGTGAAAAACTGTAAGAGCCAGGGACCATAGTGAGAGCTG-AGAGAG  849
      ||||||| |||||||| |||| ||||||||||||||||||||| ||||||
seq2  GAGGGTG-AAAACTGT-AGAG-CAGGGACCATAGTGAGAGCTGAAGAGAG  847

seq1  CATCTTTTATGTGGGACGGGGAAGCTATAGTCAAGAGTGA-CCTTGA  895
      | | ||||||||||||| ||||||||||||||| | |||| ||||||
seq2  CTTTTTTTATGTGGGAC-GGGAAGCTATAGTCAGGGGTGACCCTTGA  893

seq1: chr3_122890201_122891337
seq2: B6Ng01-034B01.g_67_1206 (reverse)

seq1  TCTAGATAAAAGCCCCAAGGCAGGAAAGAGATTCTAGTAGT-GGAAAAAA  49
      ||||||||||   ||||||||  |||||||| |||||  || ||  ||||
seq2  TCTAGATAAATCGCCCAAGGCCAGAAAGAGAATCTAG--GTAGGTGAAAA  48

seq1  AAAAAGAAAGCTA-GTGTGTCTGCCATATTGAG-CAACAGAAAATGGAGA  97
      ||||||||||||| | ||||||||||  ||||| || |||||||| ||||
seq2  AAAAAGAAAGCTAGGGGTGTCTGCCAATTTGAGCCACCAGAAAAT-GAGA  97

seq1  GACTTGTGCCTGGACACA-CAAGCAAGCTTGCAGACCTCAAGGGAGATCA  146
      |||||||||||||||||| ||||||||||||||| |||||||| ||||||
seq2  GACTTGTGCCTGGACACACCAAGCAAGCTTGCAGGCCTCAAGGAAGATCA  147

seq1  GGTTTCTCTGCAGTGACAGAGAAAACCTGGGGAAGAGTTTCCAGAAAATC  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGCAGTGAAAGAGAAAACCTGGGGAAGAGTTTCCAGAAAATC  197

seq1  AGTTATTCTCTTACGGCATGCTACAGCCTGGTTATTGTTCGGAAACAGAT  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTATTCTCTTACGGCATGCTACAGCCTGGTTATTG-TCGGAAACAGAT  246

seq1  GCTGAGGTGGGGAGAGTCCAGTATGCAGAAGCCCCGAAGGCTGCAATGGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GCTGAGGTGGGGAGAGTCCAGTATGCAGAAGCCCCGAAGGCTGCAAATGA  296

seq1  GCCTAGGCT-CCACAGCAGTGAAGGTGGGAGAAGACAGC-TGCCTGGTGA  344
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTAGGCTCCCACAGCAGTGAAGGTGGGAGAAGACAGCTTGCCTGGTGA  346

seq1  CCGAGGAACACAGCAGCAGCATCGTAGAATCCTAAGACCCTGAGAGCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAACACAGCAGCAGCATCGTAGAATCCTAAGACCCTGAGAGCCAA  396

seq1  GAGGAAAACAGTAGCTCTCGTCGTCTCCCTGCAGA-TTTTTCTTCCAAGC  443
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGAAAACAGTAGCTCTCGTCGTCTCCCTGCAGATTTTTTCTTCCAAGC  446

seq1  CTTAGCAGAGCTAGCTTCAGAGTAGATATTCCAGGAAGAGAAGAAAATGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGAGCTAGCTTCAGAGTAGATATTCCAGGAAGAGAAGAAAATGT  496

seq1  TACCACAGATTTAGCTGTTGTTGGCGATGGCGTGTTGTAAGTCCAAGTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGATTTAGCTGTTGTTGGCGATGGCGTGTTGTAAGTCCAAGTTT  546

seq1  CCTTGGAATTTTCTAGTTGGAACTGATGGGATTGTGTAGCAGGCAGGAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAATTTTCTAGTTGGAACTGATGGGATTGTGTAGCAGGCAGGAAG  596

seq1  AAAGAGGAGAAAGAAAGAATTCTGTCGCCCAGCAACAGCTGTGGGGAAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAGAAAGAAAGAATTCTGTCGCCCAGCAACAGCTGTGGGGAAGT  646

seq1  CTGTTGGTCAGATTTCCTTTAGGGCTTGCTTCACATTTCAATCCTGGGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTCAGATTTCCTTTAGGGCTTGCTTCACATTTCAATCCTGGGAG  696

seq1  GCTGTCACTGATACACTCACAGTAAAGAGAGAGCTGTGTGTTCAGATTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACTGATACACTCACAGTAAAGAGAGAGCTGTGTGTTCAGATTAC  746

seq1  AGAGCGGATCTGAACACGGCATCCTCACGGACGCCTGTTCTTCTGTTTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGGATCTGAACACGGCATCCTCACGGACGCCTGTTCTTCTGTTTCC  796

seq1  CTAAGAATTCCCTTTAAAATAAAATGAGCTCCGCATATGGAACTTGACAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTCCCTTTAAAATAAAATGAGCTCCGCATATGGAACTTGACAC  846

seq1  TTCCAAATTATTTAGAATCTCAAAAATTAAGCACTGAGCACCCAGTGGGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTATTTAGAATCTCAAAAATTAAGCACTGAGCACCCAGTGGGG  896

seq1  ACAGTCCTATGTGAAGGGCTAGAGAGGTAACAAATTCAAAACACATATTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTATGTGAAGGGCTAGAGAGGTAACAAATTCAAAACACATATTG  946

seq1  CGTACACACTGTGGCTGTGGAGACTTGAAGTATCTGTGTCCGGCTTCTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACACTGTGGCTGTGGAGACTTGAAGTATCTGTGTCCGGCTTCTTC  996

seq1  TGTAGATGTGCTGTTAAAGTTACTCCTCACAGGTGTGAGTCTCCTCTTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTGCTGTTAAAGTTACTCCTCACAGGTGTGAGTCTCCTCTTCC  1046

seq1  TCAACCTTCTGCTCAACAACAGGAAGCTACCAACCGAGGGCAGCAGCACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTCTGCTCAACAACAGGAAGCTACCAACCGAGGGCAGCAGCACC  1096

seq1  AGGCCCTGTGTTAGCATCATTTATCCCGAGGTGAGCCAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTGTTAGCATCATTTATCCCGAGGTGAGCCAGAATTC  1140