BAC Information

Click to search

BAC

Clone NameB6Ng01-034H06
Chromosome3 (Build37)13 (Build37)
Map Location 153,563,518 - 153,564,44429,820,314 - 29,820,392
singlet/doubletsingletsinglet
Overlap geneMsh4
Upstream geneSt6galnac5, LOC100040750, St6galnac3, EG545578, Asb17
Downstream geneRabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H06.bB6Ng01-034H06.g
ACCDH863204DH863205
length91460
definitionDH863204|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H06, 5' end.DH863205|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(153,563,518 - 153,564,444)(29,820,314 - 29,820,392)
sequence
gaattccaggacagccaagcctacacagaaaggtctggtctcaacgatca
tcaaaaccacacacacacacacacacacacacacaaccacccagcatctt
aaagcgtatgcacacatgctaggtaggtgttaagccctccttctggagag
agactccatctctcctcaggtagcacagacagagcactttccttgggagg
aagcaaggtgaggtgcagcgtctgcaggccggccagggaacttcaggacc
acagctctcagccatggctgggggagctgttctgagaagcagctgctccg
agttacccatgctcctgccccacatctcagggttcccaagctagacttgg
gtggggtcgtttctttggtctgttcttagtatctggggtgaacagacgtt
tgttcttaccttcccaggaaaagtcaggcacatttacacatcatgtagcc
aggacgtaatcttatatatgtcttaggaaactggtgcacacaaaatacac
actcactgacccctcagcaaaattgagtacatttagtttaaaactcagta
gtaggaaagcactcacggttagggttagggagtactcttagggtcaagtt
tttcacttaagcatcacatgagagagatttccctcctgggtcagaaaggg
tcaaataacacaaggttgcatttattaacaaacaagaatggaaatctcat
aggcatgttagcctgcccttgaggtgcacagggtcagtgatatatgcacc
tttccatcctttctaatcagtgtagatgaacctcaatgagctaccaccaa
gttttaatttatgaaacttaaaacattttaaagatcatcagtttactgat
atcctactggggggtccactttatgcctgatctctgaggatttcagcaga
tacggattctaatg
tagatttcatacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153563518_153564444
seq2: B6Ng01-034H06.b_41_952

seq1  GAATTCCAGGACAGCCAAGCCTACACAGAAAGGTCTGGTCTCAACGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGCCTACACAGAAAGGTCTGGTCTCAACGATCA  50

seq1  TCAAAACCACACACACACACACACACACACACACAACCACCCAGCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCACACACACACACACACACACACACACAACCACCCAGCATCTT  100

seq1  AAAGCGTATGCACACATGCTAGGTAGGTGTTAAGCCCTCCTTCTGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTATGCACACATGCTAGGTAGGTGTTAAGCCCTCCTTCTGGAGAG  150

seq1  AGACTCCATCTCTCCTCAGGTAGCACAGACAGAGCACTTTCCTTGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCATCTCTCCTCAGGTAGCACAGACAGAGCACTTTCCTTGGGAGG  200

seq1  AAGCAAGGTGAGGTGCAGCGTCTGCAGGCCGGCCAGGGAACTTCAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGTGAGGTGCAGCGTCTGCAGGCCGGCCAGGGAACTTCAGGACC  250

seq1  ACAGCTCTCAGCCATGGCTGGGGGAGCTGTTCTGAGAAGCAGCTGCTCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTCAGCCATGGCTGGGGGAGCTGTTCTGAGAAGCAGCTGCTCCG  300

seq1  AGTTACCCATGCTCCTGCCCCACATCTCAGGGTTCCCAAGCTAGACTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCATGCTCCTGCCCCACATCTCAGGGTTCCCAAGCTAGACTTGG  350

seq1  GTGGGGTCGTTTCTTTGGTCTGTTCTTAGTATCTGGGGTGAACAGACGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCGTTTCTTTGGTCTGTTCTTAGTATCTGGGGTGAACAGACGTT  400

seq1  TGTTCTTACCTTCCCAGGAAAAGTCAGGCACATTTACACATCATGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACCTTCCCAGGAAAAGTCAGGCACATTTACACATCATGTAGCC  450

seq1  AGGACGTAATCTTATATATGTCTTAGGAAACTGGTGCACACAAAATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTAATCTTATATATGTCTTAGGAAACTGGTGCACACAAAATACAC  500

seq1  ACTCACTGACCCCTCAGCAAAATTGAGTACATTTAGTTTAAAACTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGACCCCTCAGCAAAATTGAGTACATTTAGTTTAAAACTCAGTA  550

seq1  GTAGGAAAGCACTCACGGTTAGGGTTAGGGAGTACTCTTAGGGTCAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAGCACTCACGGTTAGGGTTAGGGAGTACTCTTAGGGTCAAGTT  600

seq1  TTTCACTTAAGCATCACATGAGAGAGATTTCCCTCCTGGGTCAGAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCACTTAAGCATCACATGAGAGAGATTTCCCTCCTGGGTCAGAAAGGG  650

seq1  TCAAATAACACAAGGTTGCATTTATTAACAAACAAGAATGGAAATCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAACACAAGGTTGCATTTATTAACAAACAAGAATGGAAATCTCAT  700

seq1  AGGCATGTTAGCCTGCCC-TGAGGTGCACAGGGGTCAGTGATATATGCAC  749
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AGGCATGTTAGCCTGCCCTTGAGGTGCACA-GGGTCAGTGATATATGCAC  749

seq1  CTTTCCATCCTTTCT-ATCAGTGGTAGATGAACCTCAAATGAGCTAACCA  798
      ||||||||||||||| |||||| ||||||||||||| |||||||| ||||
seq2  CTTTCCATCCTTTCTAATCAGT-GTAGATGAACCTC-AATGAGCT-ACCA  796

seq1  CCCAATTTTTAATTTATGAAACTTTAAAACATTTTAAAAGATCATCAGTT  848
       |||| |||||||||||||||| |||||||||||| ||||||||||||||
seq2  -CCAAGTTTTAATTTATGAAAC-TTAAAACATTTT-AAAGATCATCAGTT  843

seq1  TTACCTGAATATCCTACTTGTGGTGTCCAACTTTTATGCCCTGATCTCTG  898
      |   ||| ||||||||| || || |||||   |||||| |||||||||||
seq2  T--ACTG-ATATCCTAC-TGGGGGGTCCA--CTTTATG-CCTGATCTCTG  886

seq1  GGGATTTCCAGCAGATAACGGAGTTCTAA  927
       |||||| |||||||| ||||| ||||||
seq2  AGGATTT-CAGCAGAT-ACGGA-TTCTAA  912

seq1: chr13_29820314_29820392
seq2: B6Ng01-034H06.g_80_134 (reverse)

seq1  ACACACACAGAGACACAAGCACACACACACACACACACACACACACACAC  50
      |||||||||          |||||||||||||||||||||||||||||||
seq2  ACACACACA----------CACACACACACACACACACACACACACACAC  40

seq1  ACACACCTCCTCCTCCTCCTAGGTATGAA  79
      ||||||||              |||||||
seq2  ACACACCT--------------GTATGAA  55