BAC Information

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BAC

Clone NameB6Ng01-034I02
Chromosome3 (Build37)X (Build37)
Map Location 106,336,095 - 106,336,87338,623,067 - 38,623,186
singlet/doubletsingletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I02.bB6Ng01-034I02.g
ACCDH863238DH863239
length777400
definitionDH863238|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I02, 5' end.DH863239|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,336,095 - 106,336,873)(38,623,067 - 38,623,186)
sequence
gaattcagagacatgggatattttgtacttaaaggagaccttcctgagca
ccattaaaaacagggaatttatgtctgctaacaatcccagttacttcagg
catcagtaagttctttgttatttagtagttcagtcatctcttccacagct
ttcaaccaagaatacttacatagagaatgaggagacaatcaggctggcaa
gatgggctcattgggtaaaagcagttgcctcttggtctgaagacctgagt
taattcctggactcacatagtggaggaagagaacctttgacctccacatg
ttttctgtgcatgcccataggagcatgcacacactcatacacaccaagta
aatgtaattgaaatgaagactaaatatctgatattaaagaaacatttggc
caaatctaataatgaaactattcgaatgttgttgctgttatctttttttg
caggcacctctgtgggcttatattgcctgtgcttgtggccttttcattta
ccagtctctggatgccatagatgggaaacaggccagaagaactaacagta
gctctcctctgggagaactttttgatcatggctgtgactcactatcgaca
ggtattgttgctttttaatgctgagaattattaactgatagaaacaatat
gataatcaatattgcaataaataaatttagttctcaagcaaatgatattt
atattaaattttagtggggtttttttgaaactcatggttctggttaatgc
tgttcatgcttgcattattgggaaact
atgatattcctaggcaaatggatggacctggagggcatcatcctgagtga
ggtaacataatcacaaaggtactcacacaatatgtactcactgataagtg
tatattagccccaaacttaggatacccaagatataagatacaatttgcta
aacgcttgaaattcaagaagaatgaataccaaagtgtggacactgtgccc
cttcttagaattgggaacaaaacatacatggaaggagttacagagacaaa
gttaggagctgtgatgaaaggatggaccatctagagactgccatatctag
ggatccaccccataatcagcttcctaaagctgacaccattgcatacagta
gcaagattttgctgaaaggacccagatatagctgtctctttgtgagacta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106336095_106336873
seq2: B6Ng01-034I02.b_44_820 (reverse)

seq1  AGTTTCCCAATAATGCCAGCAATGAACAAGCATTAACCAGAACCATGAGT  50
      |||||||||||||||| ||| |||||| ||||||||||||||||||||||
seq2  AGTTTCCCAATAATGCAAGC-ATGAAC-AGCATTAACCAGAACCATGAGT  48

seq1  CTCAAAAAAACCCCACTAAAATTTAATATAAATATCATTTGCTTGAGAAC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAACCCCACTAAAATTTAATATAAATATCATTTGCTTGAGAAC  98

seq1  TAAATTTATTTATTGCAATATTGATTATCATATTGTTTCTATCAGTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATTTATTGCAATATTGATTATCATATTGTTTCTATCAGTTAAT  148

seq1  AATTCTCAGCATTAAAAAGCAACAATACCTGTCGATAGTGAGTCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGCATTAAAAAGCAACAATACCTGTCGATAGTGAGTCACAGCC  198

seq1  ATGATCAAAAAGTTCTCCCAGAGGAGAGCTACTGTTAGTTCTTCTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAAAAGTTCTCCCAGAGGAGAGCTACTGTTAGTTCTTCTGGCCT  248

seq1  GTTTCCCATCTATGGCATCCAGAGACTGGTAAATGAAAAGGCCACAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCATCTATGGCATCCAGAGACTGGTAAATGAAAAGGCCACAAGCA  298

seq1  CAGGCAATATAAGCCCACAGAGGTGCCTGCAAAAAAAGATAACAGCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATATAAGCCCACAGAGGTGCCTGCAAAAAAAGATAACAGCAACA  348

seq1  ACATTCGAATAGTTTCATTATTAGATTTGGCCAAATGTTTCTTTAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGAATAGTTTCATTATTAGATTTGGCCAAATGTTTCTTTAATATC  398

seq1  AGATATTTAGTCTTCATTTCAATTACATTTACTTGGTGTGTATGAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTAGTCTTCATTTCAATTACATTTACTTGGTGTGTATGAGTGTG  448

seq1  TGCATGCTCCTATGGGCATGCACAGAAAACATGTGGAGGTCAAAGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTCCTATGGGCATGCACAGAAAACATGTGGAGGTCAAAGGTTCT  498

seq1  CTTCCTCCACTATGTGAGTCCAGGAATTAACTCAGGTCTTCAGACCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCACTATGTGAGTCCAGGAATTAACTCAGGTCTTCAGACCAAGA  548

seq1  GGCAACTGCTTTTACCCAATGAGCCCATCTTGCCAGCCTGATTGTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGCTTTTACCCAATGAGCCCATCTTGCCAGCCTGATTGTCTCCT  598

seq1  CATTCTCTATGTAAGTATTCTTGGTTGAAAGCTGTGGAAGAGATGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTATGTAAGTATTCTTGGTTGAAAGCTGTGGAAGAGATGACTGA  648

seq1  ACTACTAAATAACAAAGAACTTACTGATGCCTGAAGTAACTGGGATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAATAACAAAGAACTTACTGATGCCTGAAGTAACTGGGATTGTT  698

seq1  AGCAGACATAAATTCCCTGTTTTTAATGGTGCTCAGGAAGGTCTCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACATAAATTCCCTGTTTTTAATGGTGCTCAGGAAGGTCTCCTTTA  748

seq1  AGTACAAAATATCCCATGTCTCTGAATTC  779
      |||||||||||||||||||||||||||||
seq2  AGTACAAAATATCCCATGTCTCTGAATTC  777

seq1: chrX_38623067_38623186
seq2: B6Ng01-034I02.g_354_474 (reverse)

seq1  TAGTCTCAC-AAGAGACAGCTATATCAGGGTCCTTTCAGCATAATCTTGC  49
      ||||||||| |||||||||||||||| |||||||||||||| ||||||||
seq2  TAGTCTCACAAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGC  50

seq1  TAGTGTATGCAATGATGTCAGCGTTTGGAAGCTGATCATGGGGTGGATCC  99
      || ||||||||||| ||||||| || |||||||||| |||||||||||||
seq2  TACTGTATGCAATGGTGTCAGCTTTAGGAAGCTGATTATGGGGTGGATCC  100

seq1  CTGGATATGGCAGTTTCTAGA  120
      || ||||||||||| ||||||
seq2  CTAGATATGGCAGTCTCTAGA  121