BAC Information

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BAC

Clone NameB6Ng01-034J05
Chromosome3 (Build37)
Map Location 122,257,440 - 122,396,235
singlet/doubletdoublet
Overlap geneFnbp1l, Ppia-ps3_2252.1
Upstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
Downstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J05.bB6Ng01-034J05.g
ACCDH863287DH863288
length1,007373
definitionDH863287|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J05, 5' end.DH863288|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,257,440 - 122,258,461)(122,395,857 - 122,396,235)
sequence
gaattcttgaatgccaagaaaacatttctatctctagcattagttttcaa
atattatccagtaaactttgaaatatcaatcaaaatataaaaatgtcaat
cccaaagataaacactttcctccctgttctgtcctctaagccgctagtca
gttactatggcaactaagacatggaaatttaagttttccagaattataaa
aacaatgtgtgacaatttaaagcaacatatgaaaataaacctaataatgg
gtaagctaaccatttttaagtattgctgttgtaaaattctaactgcaaat
tgttcaataagaatactgcacatttaagattctctctccaggccttatag
ttttaaactgcattattttttccatataattaaatttactatgtctctct
ataagaagcaacttaaaacttctacctcataactaaggcaaaagagatac
caaataaacctctcacacaagaataaacgtctctgtgaggagcctttcta
agggtcatgacttgcctctattatccacactcagctagtgaagctgaatg
gtaaaaaagttgaaggagatgctaatacactgggctggtctgttattact
agcatcaggtgtctaaaatgcactttaattctgggaaaagctacaaaaag
aaaagagaaagaacacactatttgtgtattactgttaatatttgtatatt
tactgttagtattcgtatattaatttactgttaatgatctgatgctatgt
atgggttagcacacctgtctttcaaatggccaaaaacttcataaattaat
ctaaattgtagctgtataattaagagcattacctaaaattcaacataaaa
gtgaaaatggtagcaggccaggcaagtagtttatgatatgattaagtatt
tcgtatacccaggactaggttcatcttcaaaccagaaacaaaagttatag
atatgaagtaccataatttatagaagggacagtcatggctaaggacaatg
cattgaa
ctggaaacttggataagagatgtgggagaaggaaaaagctaaaatgacta
caacgctttagtgctgtttatcagtaagaagaaaaaggatgtgggcagac
tctggaggggaagttcagctttggagcatgctgtgttttcatttgctaga
tgtttcatcccttaatgtggggactgtatctgctcttcattttataacag
attgttcaactaacatcatccaaggtaccagcttaccaatgcgctgctca
gggaatatctgaaaagagaaaaaatagaactgatacatgctatttatact
atctttactttttggtttttgtttgttggttgctggttaactggttagtt
ggttggttggttttggggtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122257440_122258461
seq2: B6Ng01-034J05.b_48_1054

seq1  GAATTCTTGAATGCCAAGAAAACATTTCTATCTCTAGCATTAGTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATGCCAAGAAAACATTTCTATCTCTAGCATTAGTTTTCAA  50

seq1  ATATTATCCAGTAAACTTTGAAATATCAATCAAAATATAAAAATGTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCCAGTAAACTTTGAAATATCAATCAAAATATAAAAATGTCAAT  100

seq1  CCCAAAGATAAACACTTTCCTCCCTGTTCTGTCCTCTAAGCCGCTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGATAAACACTTTCCTCCCTGTTCTGTCCTCTAAGCCGCTAGTCA  150

seq1  GTTACTATGGCAACTAAGACATGGAAATTTAAGTTTTCCAGAATTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATGGCAACTAAGACATGGAAATTTAAGTTTTCCAGAATTATAAA  200

seq1  AACAATGTGTGACAATTTAAAGCAACATATGAAAATAAACCTAATAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGTGACAATTTAAAGCAACATATGAAAATAAACCTAATAATGG  250

seq1  GTAAGCTAACCATTTTTAAGTATTGCTGTTGTAAAATTCTAACTGCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTAACCATTTTTAAGTATTGCTGTTGTAAAATTCTAACTGCAAAT  300

seq1  TGTTCAATAAGAATACTGCACATTTAAGATTCTCTCTCCAGGCCTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATAAGAATACTGCACATTTAAGATTCTCTCTCCAGGCCTTATAG  350

seq1  TTTTAAACTGCATTATTTTTTCCATATAATTAAATTTACTATGTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTGCATTATTTTTTCCATATAATTAAATTTACTATGTCTCTCT  400

seq1  ATAAGAAGCAACTTAAAACTTCTACCTCATAACTAAGGCAAAAGAGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGCAACTTAAAACTTCTACCTCATAACTAAGGCAAAAGAGATAC  450

seq1  CAAATAAACCTCTCACACAAGAATAAACGTCTCTGTGAGGAGCCTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAACCTCTCACACAAGAATAAACGTCTCTGTGAGGAGCCTTTCTA  500

seq1  AGGGTCATGACTTGCCTCTATTATCCACACTCAGCTAGTGAAGCTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGACTTGCCTCTATTATCCACACTCAGCTAGTGAAGCTGAATG  550

seq1  GTAAAAAAGTTGAAGGAGATGCTAATACACTGGGCTGGTCTGTTATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAGTTGAAGGAGATGCTAATACACTGGGCTGGTCTGTTATTACT  600

seq1  AGCATCAGGTGTCTAAAATGCACTTTAATTCTGGGAAAAGCTACAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGTGTCTAAAATGCACTTTAATTCTGGGAAAAGCTACAAAAAG  650

seq1  AAAAGAGAAAGAACACACTATTTGTGTATTACTGTTAATATTTGTATA-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAGAGAAAGAACACACTATTTGTGTATTACTGTTAATATTTGTATATT  700

seq1  TACTGTTAGTATTCGTATATTAA-TTACTGTTAATGATCTGATGCTATGT  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACTGTTAGTATTCGTATATTAATTTACTGTTAATGATCTGATGCTATGT  750

seq1  AT-GGTTAGCACACCTGTCTTTCAAATGGCCAAAAACTTCAATAAATTAA  797
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGGGTTAGCACACCTGTCTTTCAAATGGCCAAAAACTTC-ATAAATTAA  799

seq1  TCTAAATTGTAGCTGTATAATTAAGAGCATTACCTAAAATTCAAACATAA  847
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTAAATTGTAGCTGTATAATTAAGAGCATTACCTAAAATTC-AACATAA  848

seq1  AAGTGAAAAT-GTAGCAGGCCAGGCAAGTAGTTTAGTGATATGATTAAGT  896
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AAGTGAAAATGGTAGCAGGCCAGGCAAGTAGTTTA-TGATATGATTAAGT  897

seq1  ATTTCGTATACACAAGGACCTAGGTTCAATCTTCAAAACCAAGAAAAACA  946
      ||||||||||| | |||| |||||||| ||||||||| |    | |||||
seq2  ATTTCGTATAC-CCAGGA-CTAGGTTC-ATCTTCAAACC----AGAAACA  940

seq1  AAAGTTATTAGCATAATGAAGTACCATTAATTTATTAGTAGTGTAACAGT  996
      ||||||| ||| || ||||||||||| ||||||| ||| || |  |||||
seq2  AAAGTTA-TAG-AT-ATGAAGTACCA-TAATTTA-TAGAAGGG--ACAGT  983

seq1  CATTGCTAAGGGACAATGCACTTGAA  1022
      ||| ||||| |||||||||| |||||
seq2  CATGGCTAA-GGACAATGCA-TTGAA  1007

seq1: chr3_122395857_122396235
seq2: B6Ng01-034J05.g_69_447 (reverse)

seq1  CCAAACCCCAAAACCAACCAACCAACTAACCAGTTAACCAGCAACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCCAAAACCAACCAACCAACTAACCAGTTAACCAGCAACCAACA  50

seq1  AACAAAAACCAAAAAGTAAAGATAGTATAAATAGCATGTATCAGTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAAAAAGTAAAGATAGTATAAATAGCATGTATCAGTTCTAT  100

seq1  TTTTTCTCTTTTCAGATATTCCCTGAGCAGCGCATTGGTAAGCTGGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTTTTCAGATATTCCCTGAGCAGCGCATTGGTAAGCTGGTACC  150

seq1  TTGGATGATGTTAGTTGAACAATCTGTTATAAAATGAAGAGCAGATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGATGTTAGTTGAACAATCTGTTATAAAATGAAGAGCAGATACAG  200

seq1  TCCCCACATTAAGGGATGAAACATCTAGCAAATGAAAACACAGCATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACATTAAGGGATGAAACATCTAGCAAATGAAAACACAGCATGCTC  250

seq1  CAAAGCTGAACTTCCCCTCCAGAGTCTGCCCACATCCTTTTTCTTCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGAACTTCCCCTCCAGAGTCTGCCCACATCCTTTTTCTTCTTAC  300

seq1  TGATAAACAGCACTAAAGCGTTGTAGTCATTTTAGCTTTTTCCTTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACAGCACTAAAGCGTTGTAGTCATTTTAGCTTTTTCCTTCTCCC  350

seq1  ACATCTCTTATCCAAGTTTCCAGGAATTC  379
      |||||||||||||||||||||||||||||
seq2  ACATCTCTTATCCAAGTTTCCAGGAATTC  379