BAC Information

Click to search

BAC

Clone NameB6Ng01-034P09
Chromosome3 (Build37)
Map Location 119,296,828 - 119,443,080
singlet/doubletdoublet
Overlap geneLOC100043278, Ptbp2
Upstream geneDpyd, LOC100043275
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034P09.bB6Ng01-034P09.g
ACCDH863560DH863561
length1,0051,095
definitionDH863560|Mus musculus domesticus DNA, BAC clone: B6Ng01-034P09, 5' end.DH863561|Mus musculus domesticus DNA, BAC clone: B6Ng01-034P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,442,069 - 119,443,080)(119,296,828 - 119,297,942)
sequence
gaattccattacaaggaagcctttaacttcctgaggataactaactaaaa
gtatcttcatcttacccctcttttatcacctctcttttcccacatataac
tcccctaaaataaatgaagaaaaactggaatgaaaaagaatgttattaaa
atatgtatgcttcagatttggcgttctgtctaaaccaaaggtctttatgt
gttcttgttagggtgattttgtttgctttagcagcatgcagaaataacaa
agtatttacgaagatgaaaataggagtccatgggtgcatggaatttttta
aaaaagtatagtccaccacaaatgttgaaaaattgtacatgaagattttt
ctagaacatgcttattgctcttctttggatgtggttatcattattttaat
ttacccctaaaatggatggatctgtgctacttacataaagtgcagtataa
aaacaagcagctggaagttgattgaccgaagagtaggggaaatgtaagtt
agaataagcaaactgataatgtcaaattttaatcgttttctttaatttgt
cctgttttgaaatttcactttgatatttttaatactatcttcatttttat
ttctgtgtggatgtttttctctgcatgtatgtttgtataccacctgtgta
gagtgcctgtgaagggcagaagagggcatctgattctctggaactggagt
ttacagttgttagctgccacatgagttctgggacccgagcccatgtcttc
aacaggtcactaagtgctcatgactactgagccatctctatccccaagta
tagtatcttgaaatgaaggttactggctagagagaatccagattgatggt
tgagaaagaagaaagtagcttctaagttttagtttatgcccatcatttac
aaaacgaatgatggttgaaaatacttattaaaaactgtaacactccattc
acttgtaaatgttaaaaatgatgggatgaatgcaaatgagtctaatgctc
agagc
gaattccttatacagttcattgtttatactgcattctcaataaatctctt
tcaaataagtaaatactaactttactaattttaatatcaattttaaaaat
caacttctctctttgcctaataatagcttactttattctcattttgctct
tgataaactaggaaaaaccctcccaccatggtccttaaaaacaaaaagaa
gtaagaaaaggtgggaaattttaatgtttattttagattaaaattaccat
tttttctatgtctggacaatataatgtatttacaagggaatatttataaa
cataagcaagtttggggggagaaccagagttagagcagatgggaaaaggg
ttaattaatgtcaggtctcagttcctttttttcatgtgttctctgtgtgc
aactgatgtctgtgaaaatatgctataaactgcaaacccctatgctatgt
acaaattaaacagttttattaaaacaatacttcttgttcctttattctta
actatgtcattttggtcccatacatattagtaaaatttcttctgaaatat
tacaatattatctgcataagtaaataaagtattataatccaaatctccat
ttatgcagacagagaaagaaaaatggagcaccatggtagcagtgttctcc
aaagcagctctcagctcacttctgcaatgttaaataacatgaaaaaggaa
aaataatggagttagcactgttggtacttgactcctttaacataaggaga
gtattctgggttatccaggtatgatcaaaataatcccaagacttcttttt
aaaagaaattgggaagacccaatatggacagaagcatataatttggtgat
ttttacattatttgcaggtagaagaagccagagttagggatgtagctggc
ttataaaagctggaaaggaaaccaatgagttccccaggactgctccaaaa
tgacagctctgtccaaacccagatttgggtcaacttttaaccatagaatg
tatgtcttataaacagtgactttgtggtaataccacgagcaatagaaatg
ggttgagaattaagtggctgacatggtactgtgtcagacgaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119442069_119443080
seq2: B6Ng01-034P09.b_46_1050 (reverse)

seq1  GCTCTTGAGCATTAGACTCATTTTGCATTCATACCAATCATTTTTATACA  50
      |||| ||||||||||||||| ||||||||||| || |||||||||| |||
seq2  GCTC-TGAGCATTAGACTCA-TTTGCATTCAT-CCCATCATTTTTA-ACA  46

seq1  TTTACAAGTGAATGGAGTTGTTACATGTTTGTAATAAGTATTTTCAACAC  100
      ||||||||||||||||| ||||||| |||| |||||||||||||||||  
seq2  TTTACAAGTGAATGGAG-TGTTACA-GTTTTTAATAAGTATTTTCAACCA  94

seq1  TCATCTGTTTTGTAAAATGATGGGCATAAACTAAAACTTTAGAAGCTACT  150
      ||||  ||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCATTCGTTTTGT-AAATGATGGGCATAAACTAAAAC-TTAGAAGCTACT  142

seq1  TTCTTCTTTCTCAACCATCAATCTGGATTCTCTCTAGCCAGTAACCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTCAACCATCAATCTGGATTCTCTCTAGCCAGTAACCTTCA  192

seq1  TTTCAAGATACTATACTTGGGGATAGAGATGGCTCAGTAGTCATGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATACTATACTTGGGGATAGAGATGGCTCAGTAGTCATGAGCAC  242

seq1  TTAGTGACCTGTTGAAGACATGGGCTCGGGTCCCAGAACTCATGTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACCTGTTGAAGACATGGGCTCGGGTCCCAGAACTCATGTGGCAG  292

seq1  CTAACAACTGTAAACTCCAGTTCCAGAGAATCAGATGCCCTCTTCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACTGTAAACTCCAGTTCCAGAGAATCAGATGCCCTCTTCTGCCC  342

seq1  TTCACAGGCACTCTACACAGGTGGTATACAAACATACATGCAGAG-AAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCACAGGCACTCTACACAGGTGGTATACAAACATACATGCAGAGAAAAA  392

seq1  CATCCACACAGAAATAAAAATGAAGATAGTATTAAAAATATCAAAGTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACAGAAATAAAAATGAAGATAGTATTAAAAATATCAAAGTGAA  442

seq1  ATTTCAAAACAGGACAAATTAAAGAAAACGATTAAAATTTGACATTATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAACAGGACAAATTAAAGAAAACGATTAAAATTTGACATTATCA  492

seq1  GTTTGCTTATTCTAACTTACATTTCCCCTACTCTTCGGTCAATCAACTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTATTCTAACTTACATTTCCCCTACTCTTCGGTCAATCAACTTC  542

seq1  CAGCTGCTTGTTTTTATACTGCACTTTATGTAAGTAGCACAGATCCATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTTGTTTTTATACTGCACTTTATGTAAGTAGCACAGATCCATCC  592

seq1  ATTTTAGGGGTAAATTAAAATAATGATAACCACATCCAAAGAAGAGCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGGGTAAATTAAAATAATGATAACCACATCCAAAGAAGAGCAAT  642

seq1  AAGCATGTTCTAGAAAAATCTTCATGTACAATTTTTCAACATTTGTGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTTCTAGAAAAATCTTCATGTACAATTTTTCAACATTTGTGGTG  692

seq1  GACTATACTTTTTTAAAAAATTCCATGCACCCATGGACTCCTATTTTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATACTTTTTTAAAAAATTCCATGCACCCATGGACTCCTATTTTCAT  742

seq1  CTTCGTAAATACTTTGTTATTTCTGCATGCTGCTAAAGCAAACAAAATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTAAATACTTTGTTATTTCTGCATGCTGCTAAAGCAAACAAAATCA  792

seq1  CCCTAACAAGAACACATAAAGACCTTTGGTTTAGACAGAACGCCAAATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACAAGAACACATAAAGACCTTTGGTTTAGACAGAACGCCAAATCT  842

seq1  GAAGCATACATATTTTAATAACATTCTTTTTCATTCCAGTTTTTCTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATACATATTTTAATAACATTCTTTTTCATTCCAGTTTTTCTTCAT  892

seq1  TTATTTTAGGGGAGTTATATGTGGGAAAAGAGAGGTGATAAAAGAGGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGGGGAGTTATATGTGGGAAAAGAGAGGTGATAAAAGAGGGGT  942

seq1  AAGATGAAGATACTTTTAGTTAGTTATCCTCAGGAAGTTAAAGGCTTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGATACTTTTAGTTAGTTATCCTCAGGAAGTTAAAGGCTTCCT  992

seq1  TGTAATGGAATTC  1012
      |||||||||||||
seq2  TGTAATGGAATTC  1005

seq1: chr3_119296828_119297942
seq2: B6Ng01-034P09.g_67_1161

seq1  GAATTCCTTATACAGTTCATTGTTTATACTGCATTCTCAATAAATCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATACAGTTCATTGTTTATACTGCATTCTCAATAAATCTCTT  50

seq1  TCAAATAAGTAAATACTAACTTTACTAATTTTAATATCAATTTTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAGTAAATACTAACTTTACTAATTTTAATATCAATTTTAAAAAT  100

seq1  CAACTTCTCTCTTTGCCTAATAATAGCTTACTTTATTCTCATTTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTCTCTTTGCCTAATAATAGCTTACTTTATTCTCATTTTGCTCT  150

seq1  TGATAAACTAGGAAAAACCCTCCCACCATGGTCCTTAAAAACAAAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTAGGAAAAACCCTCCCACCATGGTCCTTAAAAACAAAAAGAA  200

seq1  GTAAGAAAAGGTGGGAAATTTTAATGTTTATTTTAGATTAAAATTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAAGGTGGGAAATTTTAATGTTTATTTTAGATTAAAATTACCAT  250

seq1  TTTTTCTATGTCTGGACAATATAATGTATTTACAAGGGAATATTTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATGTCTGGACAATATAATGTATTTACAAGGGAATATTTATAAA  300

seq1  CATAAGCAAGTTTGGGGGGAGAACCAGAGTTAGAGCAGATGGGAAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAAGTTTGGGGGGAGAACCAGAGTTAGAGCAGATGGGAAAAGGG  350

seq1  TTAATTAATGTCAGGTCTCAGTTCCTTTTTTTCATGTGTTCTCTGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATGTCAGGTCTCAGTTCCTTTTTTTCATGTGTTCTCTGTGTGC  400

seq1  AACTGATGTCTGTGAAAATATGCTATAAACTGCAAACCCCTATGCTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGTCTGTGAAAATATGCTATAAACTGCAAACCCCTATGCTATGT  450

seq1  ACAAATTAAACAGTTTTATTAAAACAATACTTCTTGTTCCTTTATTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAAACAGTTTTATTAAAACAATACTTCTTGTTCCTTTATTCTTA  500

seq1  ACTATGTCATTTTGGTCCCATACATATTAGTAAAATTTCTTCTGAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCATTTTGGTCCCATACATATTAGTAAAATTTCTTCTGAAATAT  550

seq1  TACAATATTATCTGCATAAGTAAATAAAGTATTATAATCCAAATCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTATCTGCATAAGTAAATAAAGTATTATAATCCAAATCTCCAT  600

seq1  TTATGCAGACAGAGAAAGAAAAATGGAGCACCATGGTAGCAGTGTTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGACAGAGAAAGAAAAATGGAGCACCATGGTAGCAGTGTTCTCC  650

seq1  AAAGCAGCTCTCAGCTCACTTCTGCAATGTTAAATAACATGAAAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTCTCAGCTCACTTCTGCAATGTTAAATAACATGAAAAAGGAA  700

seq1  AAATAATGGAGTTAGCACTGTTGGTACTTGACTCCTTTAACATAAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGGAGTTAGCACTGTTGGTACTTGACTCCTTTAACATAAGGAGA  750

seq1  GTATTCTGGGTTATCCAGGTATGATCAAAATAATCCCAAGACTTCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGGGTTATCCAGGTATGATCAAAATAATCCCAAGACTTCTTTTT  800

seq1  AAAAGAAATTGGGAAGACCCAATATGGACAGAAGCATATAATTTGGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTGGGAAGACCCAATATGGACAGAAGCATATAATTTGGTGAT  850

seq1  TTTTACATAATTTGCAGGTAGAAGAAGCCAGAAGCTAAGGGATGTAGCTG  900
      |||||||| |||||||||||||||||||||||   | |||||||||||||
seq2  TTTTACATTATTTGCAGGTAGAAGAAGCCAGA--GTTAGGGATGTAGCTG  898

seq1  GCTTATAAAAGCTGGAAAGGAAACCAAATGAGTTCCCCAGGACTGCTCCA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTATAAAAGCTGGAAAGGAAACC-AATGAGTTCCCCAGGACTGCTCCA  947

seq1  AAATGACAGCTCTGTCCAAACCCAAGATTTGGGTTCAACTTTTAACCCAT  1000
      ||||||||||||||||||||||| ||||||||| ||||||||||| ||||
seq2  AAATGACAGCTCTGTCCAAACCC-AGATTTGGG-TCAACTTTTAA-CCAT  994

seq1  AGAAATGTATGTTCTTATAAACAGTGACTTTGTGGTAAATTACCACAGAA  1050
      || |||||||| ||||||||||||||||||||||||||  ||||||   |
seq2  AG-AATGTATG-TCTTATAAACAGTGACTTTGTGGTAA--TACCAC--GA  1038

seq1  GCAATAGAAAATGGGTAGAAGGAATTATGTGGCTGAGCCATGAGTACTAG  1100
      ||||||| |||||||| ||  |||||| ||||||||  |||| ||||| |
seq2  GCAATAG-AAATGGGTTGA--GAATTAAGTGGCTGA--CATG-GTACT-G  1081

seq1  TGTCAGACAGACCTA  1115
      |||||||| ||||||
seq2  TGTCAGAC-GACCTA  1095