BAC Information

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BAC

Clone NameB6Ng01-035A10
Chromosome3 (Build37)
Map Location 92,094,436 - 92,095,584
singlet/doubletsinglet
Overlap geneLOC619984
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514
Downstream geneSprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035A10.bB6Ng01-035A10.g
ACCDH863607DH863608
length1,1211,220
definitionDH863607|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A10, 5' end.DH863608|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaagattatatcagtattcattaagctcttttatagtgggact
gctattaggtcctttctgatataaaatcttcaatgaaaattctgcctgtc
tcccatgtgtcaccaattaattgcatcttagagagtaagcagacatctac
tactcagattccaagaggctgtaaaaatattataggtgctaggacaaaag
ataaaatatcgagtgggatatctataaaaaattcactaataacttagtta
tgatttttaactctccatgaaccttttgagctgtgacaggtgataaatgt
ttagccggataattattctaatggatatcaatgtaaacattaattgttgt
aaacttcttattcaatttataatttaaatttatgtgtaaatttgtgatga
accttttactatatgatcatgtattctgaaagatgtataagtgctgacga
caaagaaaagagacagaactgagctgaagagaactttttgacataactga
actcaggaagggtgatattgcagacatcaatggaatgggtactattcaaa
aaggaatgccccataagtgtaaccacggcaaaacagaagagtctacattg
tcactcggtgggccgtgggcatcattgtaaacaagcaagttaataagggc
aagattctagccaagaggatcaatgtgtggattgagcacatcaagctctc
aaatagcagaaacagcttcttgaagtgggtgaaggagaacgaccagaaga
aagagaagccaaagagaagggcacctgggtacagttgatgtgccagcctg
caccacctatagaagcacactttgtgaggaccaacagaaaagagcctgag
ctgttggagcccattccatatgaattcatggcctaataaacaaaacgaaa
aaggacccagactcaaagtgttttccttaaaaaatatatgcttgtcagac
attatacttttctttgaaatatgtcatgtttgtagctatttcgttggttg
ttgattattattattgtcagattattattagggtttttttttggaagaat
ttgtgtattttctttcagtactaactgttctgaactgtctggatgaggct
ggccttaaacttaggatccac
gaattcagtgaaagaaaatgttaaatttaaaaaatgcttcacacaaagta
ggcatgaaatttcagacactataataaacaaaacctacaaaaataggtat
ggaggaaggaaaagaaactcaggtaaaaggcatggaaaataatttaactg
attaatagtaaaagaaaagaatcccaaatttaaacaaagagaaatctatg
gagttgaaaaggcatgctaaactctaaatagacactaaatatacaggact
agaaaagaatttatttctacacattattatcaaagcactaaatgtaaaga
acaaagaacagatatcaaaatctgagaaaggaaagagcaagacacatgta
aaggtaggcccattaaataaaaattggtttttcagttgagaacttgaagc
aagaagagactgtatggatgtcctatcagctctgaaagatcacagttgac
agcaccaaacactatatcccataaaacttcaaatacaactaaaggagaaa
aaacttcatgatgaaaacaaatttaagacatttctgttcagcaatatagt
tctgtagaggacagtataaagaaaactggtctgaaagttaaataagtcca
agaggagacaaggaataaagaatcctagaacacttaaacaaaacaggact
aagccccccccccacacacacacactacaataacaaaataggaaaataaa
cacttcaataataatgttaaattggtttcaattgaccagtaaaagacata
gactgagatgttagattagaaaatagatattttcttttcgctcactttaa
tacacacaacttatcatcacagacagatgtcacattgtggtaaaagggtg
gaaaattgaaacaagcaaatggaaacagaagtaaacaggcattgctattt
taatatctaaaaatgggcatcaaacaaactataaaaagcgatagggagac
actatatctcaatatttaaaatcatggtaacttttacagtctaatattta
tgcaccacagcagatactaaattgtaaagacaatatttgttcaatccgta
taacttcacaagtaactggtgactcaacctactcacaaactaatcagaaa
ctctggagtattacacttatacaagggactactgagctaacatctcctaa
ggtatctggaatcttcctacgagcttgaacggtccaatactctataggat
agcagcttcgagaagcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92094436_92095584
seq2: B6Ng01-035A10.b_59_1166

seq1  TATATCAGTATTCATTAAGCTCTTTTATAGTGGGACTGCTATTAGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGTATTCATTAAGCTCTTTTATAGTGGGACTGCTATTAGGTCCT  50

seq1  TTCTGATATAAAATCTTCAATGAAAATTCTGCCTGTCTCCCATGTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATAAAATCTTCAATGAAAATTCTGCCTGTCTCCCATGTGTCAC  100

seq1  CAATTAATTGCATCTTAGAGAGTAAGCAGACATCTACTACTCAGATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATTGCATCTTAGAGAGTAAGCAGACATCTACTACTCAGATTCCA  150

seq1  AGAGGCTGTAAAAATATTATAGGTGCTAGGACAAAAGATAAAATATCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGTAAAAATATTATAGGTGCTAGGACAAAAGATAAAATATCGAG  200

seq1  TGGGATATCTATAAAAAATTCACTAATAACTTAGTTATGATTTTTAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATCTATAAAAAATTCACTAATAACTTAGTTATGATTTTTAACTC  250

seq1  TCCATGAACCTTTTGAGCTGTGACAGGTGATAAATGTTTAGCCGGATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAACCTTTTGAGCTGTGACAGGTGATAAATGTTTAGCCGGATAAT  300

seq1  TATTCTAATGGATATCAATGTAAACATTAATTGTTGTAAACTTCTTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAATGGATATCAATGTAAACATTAATTGTTGTAAACTTCTTATTC  350

seq1  AATTTATAATTTAAATTTATGTGTAAATTTGTGATGAACCTTTTACTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAATTTAAATTTATGTGTAAATTTGTGATGAACCTTTTACTATA  400

seq1  TGATCATGTATTCTGAAAGATGTATAAGTGCTGACGACAAAGAAAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTATTCTGAAAGATGTATAAGTGCTGACGACAAAGAAAAGAGA  450

seq1  CAGAACTGAGCTGAAGAGAACTTTTTGACATAACTGAACTCAGGAAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAGCTGAAGAGAACTTTTTGACATAACTGAACTCAGGAAGGGT  500

seq1  GATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCA  550

seq1  TAAGTGTAACCACGGCAAAACAGAAGAGTCTACATTGTCACTCGGTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAACCACGGCAAAACAGAAGAGTCTACATTGTCACTCGGTGGGC  600

seq1  CGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCA  650

seq1  AGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAAC  700

seq1  AGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAGAAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAGAAGCCAAA  750

seq1  GAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGA  800

seq1  AGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCA  850

seq1  TTCCATATGAATTCATGGCCTAATAAACAAAAACGAAAAAAGGACCCAGA  900
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TTCCATATGAATTCATGGCCTAATAAAC-AAAACG-AAAAAGGACCCAGA  898

seq1  CTCCAAAGTGTTTTCCTTAAAAAAAAATAATAATGCTTGTCAGACATTAA  950
      || ||||||||||||||||||||| |      |||||||||||||||| |
seq2  CT-CAAAGTGTTTTCCTTAAAAAATA-----TATGCTTGTCAGACATT-A  941

seq1  TACTTTTTCTTTTGGAAAATATTGGTTCATGTTTGTAGCTAATTTTTCGT  1000
      ||| ||||||||    ||||||    |||||||||||||||   ||||||
seq2  TAC-TTTTCTTT---GAAATAT---GTCATGTTTGTAGCTA---TTTCGT  981

seq1  TTGGGTTGTTTGATTTATTTATTATTTGTTCAGTATTTATTTATTTAGGG  1050
      |  ||||| ||||||   ||||||||   ||||   |||||   ||||||
seq2  T--GGTTG-TTGATT--ATTATTATT--GTCAG--ATTATT--ATTAGGG  1020

seq1  TTTTTTTTTTTGAGACAGAATTTGTGTATTTTCTTTCTAGTACTAGCTGT  1100
      |||||||||    |  ||||||||||||||||||||| ||||||| ||||
seq2  TTTTTTTTT----GGAAGAATTTGTGTATTTTCTTTC-AGTACTAACTGT  1065

seq1  TCTTGAACTTGTTCTGTAGATGAGGCTGGCCTTAAACTTAGGGATCCAC  1149
      || ||||||   ||||  |||||||||||||||||||||| ||||||||
seq2  TC-TGAACT--GTCTG--GATGAGGCTGGCCTTAAACTTA-GGATCCAC  1108