BAC Information

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BAC

Clone NameB6Ng01-035B13
Chromosome3 (Build37)
Map Location 66,362,429 - 66,571,032
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035B13.bB6Ng01-035B13.g
ACCDH863659DH863660
length638948
definitionDH863659|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B13, 5' end.DH863660|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,362,429 - 66,363,064)(66,570,096 - 66,571,032)
sequence
gaattcagtgttaggagagccttgaagtgattatgcagttctctgaacga
aaaggaaagtcatattgttatgcatgaattaatgtaggccatgacctacc
aggcctgcacacagatcaaagcaggtgcttgccccaaagcagactgaagg
tgggggtgtatcctcacaaaggctgtgatctttccaagcaaatggctatg
gtgctgtctcttccaaagaacactagctagccacaagaccccagagtctg
gggcataggtgctggtagttgttgctacaccagaaaaggcgctgagccat
gatgtgccaagcagcctatgagtaggcagtaaggaggcaggaagcacacc
cctacacattcctttcctgtaaagaatctcagaataaactttggggaaag
agactttggaggccaaggacttatggctcagtactgagttcatagtgagt
acttggcttttcctatgagacaattagtaaaattgaaggcaccacggagg
aggcagcactggggggtggggtgtggggcagagatacagagggaaggcca
gcagtgggggcacagaagaaatgggaagaaatttccttgatggggtaaag
gatcagacagaggaagggggaaatatggtctcaagttt
gaattcaaaggagataggctgttgctgagtagatttaactagaatcacat
tccaattacgggtttgttttcactttcatttgaagtttgtataatgtggc
aaaattttatttataatataaagttgggcagaataaatacaatctttcat
atactataatttttcttgttttttttttcttcccccctccctccctccct
tcgtttggcaggatctcactgcacagcccaggctagccttacacactcaa
tcctctctcagtctttgaagtgccgggattgcacgcatgtaccactcact
gcccgagttctctgtgccacattgtaatgtttgttctttattcttcatat
cccggaatttagtttatgataaatcatccagagtatctcagtggttctag
aaacatggttgtgtcaaatcatgaaaaggattagttagctgtgaagaaca
aatggagtatgtgcccagaaggaggaagggctgtcgcctcggatagctcc
agaatggacatggcttcctttcttctcagttatgtggtttaccccatttc
agatccaagcaagtctgtgggcagcaggaggggctgtcctttccttgtcc
atactgtcattgaccacactattttctcaggctgacacctcagctggggg
actgttcagtaagggccagagaattcatccaatggcttttaataatttgg
gattcctttttatatgaataatttattggtttcaaagcagaaagactatg
atctgtgggttagtaaattgtgcgagggctaaaacatagtcttaaagctc
cttttcattactgggtggtggcctgtacaggtgtgtggaagttaaaatat
aaaaaaagaagttgggctttttttttttttaaagatcatatcaaaggaga
aatgatacatcacagatgagaataatactggtgtctcttaaatttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66362429_66363064
seq2: B6Ng01-035B13.b_50_687

seq1  GAATTCAGTGTTAGGAGAGCCTTGAAGTGATTATGCAGTTCTCTGAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTAGGAGAGCCTTGAAGTGATTATGCAGTTCTCTGAACGA  50

seq1  AAAGGAAAGTCATATTGTTATGCATGAATTAATGTAGGCCATGACCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTCATATTGTTATGCATGAATTAATGTAGGCCATGACCTACC  100

seq1  AGGCCTGCACACAGATCAAAGCAGGTGCTTGCCCCAAAGCAGACTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCACACAGATCAAAGCAGGTGCTTGCCCCAAAGCAGACTGAAGG  150

seq1  TGGGGGTGTATCCTCACAAAGGCTGTGATCTTTCCAAGCAAATGGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGTATCCTCACAAAGGCTGTGATCTTTCCAAGCAAATGGCTATG  200

seq1  GTGCTGTCTCTTCCAAAGAACACTAGCTAGCCACAAGACCCCAGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCTCTTCCAAAGAACACTAGCTAGCCACAAGACCCCAGAGTCTG  250

seq1  GGGCATAGGTGCTGGTAGTTGTTGCTACACCAGAAAAGGCGCTGAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGGTGCTGGTAGTTGTTGCTACACCAGAAAAGGCGCTGAGCCAT  300

seq1  GATGTGCCAAGCAGCCTATGAGTAGGCAGTAAGGAGGCAGGAAGCACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCCAAGCAGCCTATGAGTAGGCAGTAAGGAGGCAGGAAGCACACC  350

seq1  CCTACACATTCCTTTCCTGTAAAGAATCTCAGAATAAACTTTGGGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATTCCTTTCCTGTAAAGAATCTCAGAATAAACTTTGGGGAAAG  400

seq1  AGACTTTGGAGGCCAAGGACTTATGGCTCAGTACTGAGTTCATAGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGAGGCCAAGGACTTATGGCTCAGTACTGAGTTCATAGTGAGT  450

seq1  ACTTGGCTTTTCCTATGAGACAATTAGTAAAATTGAAGGCACCACGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTTTTCCTATGAGACAATTAGTAAAATTGAAGGCACCACGGAGG  500

seq1  AGGCAGCACTGGGGGGTGGGGTGTGGGGCAGAGATACAGAGGGAAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCACTGGGGGGTGGGGTGTGGGGCAGAGATACAGAGGGAAGGCCA  550

seq1  GCAGT-GGGGCACAGAAGAAATGGGAAG-AATTCCCTTGAT-GGGTAAAG  597
      ||||| |||||||||||||||||||||| |||| ||||||| ||||||||
seq2  GCAGTGGGGGCACAGAAGAAATGGGAAGAAATTTCCTTGATGGGGTAAAG  600

seq1  GATCAGACAGAGGAAGGGGGAAATGATGGTCTCAAGTTT  636
      |||||||||||||||||||||||| ||||||||||||||
seq2  GATCAGACAGAGGAAGGGGGAAAT-ATGGTCTCAAGTTT  638

seq1: chr3_66570096_66571032
seq2: B6Ng01-035B13.g_70_1017 (reverse)

seq1  GATAAATTTAAAGAGACAGCCAGTATTATTCTCATCTGTGATGTATCATT  50
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GATAAATTT-AAGAGACA-CCAGTATTATTCTCATCTGTGATGTATCATT  48

seq1  TCTACCTCTGATATGATCTTTAAAAAAAAAAAAAGGCCCACTTCCTTTTT  100
      ||| ||| ||||||||||||||||||||||||||| || ||||| |||||
seq2  TCT-CCTTTGATATGATCTTTAAAAAAAAAAAAAGCCCAACTTCTTTTTT  97

seq1  --TATTTTAAC-TCCA-ACAACTGTACA-GACAACACCCAGTAATGAAAA  145
        ||||||||| |||| ||| ||||||| | || ||||||||||||||||
seq2  TATATTTTAACTTCCACACACCTGTACAGGCCACCACCCAGTAATGAAAA  147

seq1  -GAGCCTTAAGACTATGTTTTAGCCCTCGCAC-ATTTACTAA-CCACAGA  192
       |||| |||||||||||||||||||||||||| ||||||||| |||||||
seq2  GGAGCTTTAAGACTATGTTTTAGCCCTCGCACAATTTACTAACCCACAGA  197

seq1  TCATAGTC-TTCTGCTTTTGAAACAATAAATTATTCATAT-AAAAGGAAT  240
      |||||||| |||||||||  || ||||||||||||||||| |||||||||
seq2  TCATAGTCTTTCTGCTTTGAAACCAATAAATTATTCATATAAAAAGGAAT  247

seq1  CCCAAATTATTAAAAGCCATTGGATGAA-TCTCTGG-CCTTACTTGACAG  288
      |||||||||||||||||||||||||||| ||||||| |||||||  ||||
seq2  CCCAAATTATTAAAAGCCATTGGATGAATTCTCTGGCCCTTACTGAACAG  297

seq1  TCCCCAGGCTGA-GTGTCAGCCTGAG-AAATAGTGTGGTCAATGACAGTA  336
      |||||  ||||| ||||||||||||| |||||||||||||||||||||||
seq2  TCCCCCAGCTGAGGTGTCAGCCTGAGAAAATAGTGTGGTCAATGACAGTA  347

seq1  TGGACAAGGCAAGGACAGCCCCTCCTGCTGCCCACAGACTTGCTTGGATC  386
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGAAAGGACAGCCCCTCCTGCTGCCCACAGACTTGCTTGGATC  397

seq1  TGAAATGGGGTAAACCACATAACTGAGAAGAAAGGAAGCCATGTCCATTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGGGTAAACCACATAACTGAGAAGAAAGGAAGCCATGTCCATTC  447

seq1  TGGAGCTATCCGAGGCGACAGCCCTTCCTCCTTCTGGGCACATACTCCAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATCCGAGGCGACAGCCCTTCCTCCTTCTGGGCACATACTCCAT  497

seq1  TTGTTCTTCACAGCTAACTAATCCTTTTCATGATTTGACACAACCATGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCACAGCTAACTAATCCTTTTCATGATTTGACACAACCATGTT  547

seq1  TCTAGAACCACTGAGATACTCTGGATGATTTATCATAAACTAAATTCCGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCACTGAGATACTCTGGATGATTTATCATAAACTAAATTCCGG  597

seq1  GATATGAAGAATAAAGAACAAACATTACAATGTGGCACAGAGAACTCGGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAGAATAAAGAACAAACATTACAATGTGGCACAGAGAACTCGGG  647

seq1  CAGTGAGTGGTACATGCGTGCAATCCCGGCACTTCAAAGACTGAGAGAGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTGGTACATGCGTGCAATCCCGGCACTTCAAAGACTGAGAGAGG  697

seq1  ATTGAGTGTGTAAGGCTAGCCTGGGCTGTGCAGTGAGATCCTGCCAAACG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGTGTAAGGCTAGCCTGGGCTGTGCAGTGAGATCCTGCCAAACG  747

seq1  AAGGGAGGGAGGGAGGGGGGAAGAAAAAAAAAACAAGAAAAATTATAGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGGAGGGAGGGGGGAAGAAAAAAAAAACAAGAAAAATTATAGTA  797

seq1  TATGAAAGATTGTATTTATTCTGCCCAACTTTATATTATAAATAAAATTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGATTGTATTTATTCTGCCCAACTTTATATTATAAATAAAATTT  847

seq1  TGCCACATTATACAAACTTCAAATGAAAGTGAAAACAAACCCGTAATTGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATTATACAAACTTCAAATGAAAGTGAAAACAAACCCGTAATTGG  897

seq1  AATGTGATTCTAGTTAAATCTACTCAGCAACAGCCTATCTCCTTTGAATT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATTCTAGTTAAATCTACTCAGCAACAGCCTATCTCCTTTGAATT  947

seq1  C  937
      |
seq2  C  948