BAC Information

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BAC

Clone NameB6Ng01-035D18
Chromosome3 (Build37)
Map Location 77,374,566 - 77,493,429
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D18.bB6Ng01-035D18.g
ACCDH863761DH863762
length9561,057
definitionDH863761|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D18, 5' end.DH863762|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,374,566 - 77,375,258)(77,492,353 - 77,493,429)
sequence
gaattcctttaatattgctcgtgtggatatactttaaaggctgactactt
ggtactggaaaatcaattagggatacagccccgaggatgaatggttctct
ctctcctatagtagtcataaattgcctgaaatccttagtataatagtaag
gccttgcaaaatttctcataccaatattgacttgccaactagtattgtca
ttgtttaggtttcctttggtaactatattgttgacatttcatggttgtag
cttccctgtcatataaaaaagacactaacttatagagtatctcctgaccc
tctggctcttagaattttctatggtttcttctatgatgttccctgaacct
tttggtataggagtaacattaccatttgagattggacaccatgtaaccaa
ccatggaagttttgcaagttgtagctttcattgctgctctctgatataag
aagaatcttctttgatgaggagtaagagataaatgactttgtgggtataa
gggtaaatatttagaatttagacattatagtgttttagaaaattggcaat
aatatgttctgttatgggctccatgaccttaccagatagcatatgggtag
ctagccaggtttatggtactagtcacaaattgcctttttattgagaaggc
tgtatttcagttttccagatacggcatgccaccagcatattagtgccatt
attcacccttgaagatatctttgctacactgctattgttgtgattcagga
catccatgtgtcaagatttgggcaggttattcattgattattctcctgat
tttaatctctgaataaccagtatcattaattgcaaggaacatggagttgg
cttgccttgacaggcatatgccataagtattcaggtagagtctatggctc
tggagtacaatgtgtctgcagttcttagagaccatgcattcctcagcagt
gagcat
gaattctttgatttggttcagctggctggtgagaaatcctctgtcctccc
tctcctttcaacaactttatggatatatgagttttagggacccaagctaa
gattcactcagggagtggcattagaagaaggtatggccctgttggagtag
gtgtttccttgttggaatatgtttgtaactgtgggtgtgggatttaagac
cctcatcctagctgcttggaagctggtattcagctagaagccttcagatg
ttgatgtagaactatcagcttctcctgcaccatacctgtctagaagctac
catgcttctaccttgatgataatggactgaatttctgaacatgtaagtca
gccccaattaagtgttgtcctttataagactagccttggtcatgatgtct
gttcacagcagtaaaaccctaactaagacaataatttatacagtaagatc
tatccataggccaaaaaagcattttcattattgtcatggctgagtagaca
agtccttggacatattaatagtaatagtaatcaatagtaatattggtaat
taaaaaggataatagtagcagcaatagtaataataataataataaatagt
aataaaatagtaatagtatacaaaacaaaaattcatgagcagtgtagaat
agagctctcattcagaggcataacatccttgatggaactttagatgtact
tttgtaattatgtttacaagctgcatacatatgaaaatcatcatattaat
ggacaatatgtaaaatttcagttttacaactgtgcactatttgaaatatt
gtttagaagtatcacttcttacatgtattatacatcaacaaattcttctt
ctaattttttttcatacagtgtccagcacagatgtagtgcactcatggct
tcctattcttatgtattcaatatctcagtcttcattctttttactttcag
cttacatgagatcagcttttgacaactcatcttttgtacgcagtatatta
attgtttaaatttttaattggcgctgtcatactttttgtattgcattcaa
acacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77374566_77375258
seq2: B6Ng01-035D18.b_319_998

seq1  AACTTATAGAGTATCTCCTGACCCTCTGGCTCTTAGAATTTTCTATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAGAGTATCTCCTGACCCTCTGGCTCTTAGAATTTTCTATGGTT  50

seq1  TCTTCTATGATGTTCCCTGAACCTTTTGGTATAGGAGTAACATTACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGATGTTCCCTGAACCTTTTGGTATAGGAGTAACATTACCATT  100

seq1  TGAGATTGGACACCATGTAACCAACCATGGAAGTTTTGCAAGTTGTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTGGACACCATGTAACCAACCATGGAAGTTTTGCAAGTTGTAGCT  150

seq1  TTCATTGCTGCTCTCTGATATAAGAAGAATCTTCTTTGATGAGGAGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTGCTCTCTGATATAAGAAGAATCTTCTTTGATGAGGAGTAAG  200

seq1  AGATAAATGACTTTGTGGGTATAAGGGTAAATATTTAGAATTTAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGACTTTGTGGGTATAAGGGTAAATATTTAGAATTTAGACATT  250

seq1  ATAGTGTTTTAGAAAATTGGCAATAATATGTTCTGTTATGGGCTCCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTTTAGAAAATTGGCAATAATATGTTCTGTTATGGGCTCCATGA  300

seq1  CCTTACCAGATAGCATATGGGTAGCTAGCCAGGTTTATGGTACTAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGATAGCATATGGGTAGCTAGCCAGGTTTATGGTACTAGTCAC  350

seq1  AAATTGCC-TCTTATTGAGAAGGCTGTATTTCAGTTTTCCAGATACGGCA  399
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTTTTTATTGAGAAGGCTGTATTTCAGTTTTCCAGATACGGCA  400

seq1  TGCCACCAGCATATTAGTGCCATTATTCACCCTTGAAGATATC-TTGCTA  448
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCACCAGCATATTAGTGCCATTATTCACCCTTGAAGATATCTTTGCTA  450

seq1  CACTGCTAATTGTTGTGATTCAGGACATCCATGTGTCAGGATTTGGGCAG  498
      ||||||| |||||||||||||||||||||||||||||| |||||||||| 
seq2  CACTGCT-ATTGTTGTGATTCAGGACATCCATGTGTCAAGATTTGGGCA-  498

seq1  GGTTATTCATTGATTATTCTCCCTGATTTTTAATCTCTGAATTAACCAGT  548
      |||||||||||||||||||| ||||| |||||||||||||| ||||||||
seq2  GGTTATTCATTGATTATTCT-CCTGA-TTTTAATCTCTGAA-TAACCAGT  545

seq1  ATCATTAATTGCAAGGAACCATGGAGTTGGCTTGCCTTGACAGGCATATG  598
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCATTAATTGCAAGGAA-CATGGAGTTGGCTTGCCTTGACAGGCATATG  594

seq1  CCATAGGTATTTCAGGTTAGAGTCTATGGCTCCTGGAGTACAATGTGTCT  648
      ||||| ||| |||||| |||||||||||||| ||||||||||||||||| 
seq2  CCATAAGTA-TTCAGG-TAGAGTCTATGGCT-CTGGAGTACAATGTGTC-  640

seq1  TGCAGTTCCTTAGAGACACATGCATTCCCTCAGGCAGTGAAGCAT  693
      ||||||| ||||||||| |||||||| ||||| |||||| |||||
seq2  TGCAGTT-CTTAGAGAC-CATGCATT-CCTCA-GCAGTG-AGCAT  680

seq1: chr3_77492353_77493429
seq2: B6Ng01-035D18.g_66_1122 (reverse)

seq1  TTTGTTGTTTGAATGCATTTCCACAAATGTATTGACAGCTGCCAATTTAA  50
      |||| |||||||||||| | |   ||| ||| ||||||| |||||||  |
seq2  TTTG-TGTTTGAATGCAATAC--AAAAAGTA-TGACAGC-GCCAATT--A  43

seq1  AAAATTTAAACAATTTAATTATACTGCGTAACAAAAGATGGAGTTGTTCA  100
      |||||||||||||||  | |||||||||| ||||||||| |||||||   
seq2  AAAATTTAAACAATT--AATATACTGCGT-ACAAAAGAT-GAGTTGT--C  87

seq1  AAAAGCTGATCTCATGTAAAGCTGAAAGTAAAAAAGAATGGAGGACTGAG  150
      ||||||||||||||||| ||||||||||| ||||||||| || |||||||
seq2  AAAAGCTGATCTCATGT-AAGCTGAAAGT-AAAAAGAAT-GAAGACTGAG  134

seq1  ATATTGAATTACATAAGAATAGGAAGCCATGATGTGCACTTACATTCTGT  200
      |||||||| ||||||||||||||||||||||| |||||| |||| |||||
seq2  ATATTGAA-TACATAAGAATAGGAAGCCATGA-GTGCAC-TACA-TCTGT  180

seq1  GCTGTACACTGTATGATAAAAAATTAGAAGA--GATTTGTTGATGTATAA  248
      |||| ||||||||||| ||||||||||||||   ||||||||||||||||
seq2  GCTGGACACTGTATGAAAAAAAATTAGAAGAAGAATTTGTTGATGTATAA  230

seq1  TACATGTAAGAAGTGATACATTCTAAAC-ATATTTCAAATAGTGCACAGT  297
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TACATGTAAGAAGTGATAC-TTCTAAACAATATTTCAAATAGTGCACAGT  279

seq1  GTAAAAACTGAAATTTTACATATTGTCCATTAATATTGATGATTTTCATA  347
         |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAAAACTGAAATTTTACATATTGTCCATTAATA-TGATGATTTTCATA  328

seq1  TGTATGCAGCTTGTAAACATAATTACAAAAGTACATCTAAAGTTCCATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGCTTGTAAACATAATTACAAAAGTACATCTAAAGTTCCATCA  378

seq1  AGGATGTTATGCCTCTGAATGAGAGCTCTATTCTACACTGCTCATGAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTATGCCTCTGAATGAGAGCTCTATTCTACACTGCTCATGAATT  428

seq1  TTTGTTTTGTATACTATTACTATTTTTATTACTATTTATTATTATTATTA  497
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGTTTTGTATACTATTACTA-TTTTATTACTATTTATTATTATTATTA  477

seq1  TTACTATTGCTGCTACTATTATCCTTTTTAATTACCAATATTACTATTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGCTGCTACTATTATCCTTTTTAATTACCAATATTACTATTGA  527

seq1  TTACTATTACTATTAATATGTCCAAGGACTTGTCTACTCAGCCATGACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTACTATTAATATGTCCAAGGACTTGTCTACTCAGCCATGACAA  577

seq1  TAATGAAAATGCTTTTTTGGCCTATGGATAGATCTTACTGTATAAATTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAATGCTTTTTTGGCCTATGGATAGATCTTACTGTATAAATTAT  627

seq1  TGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACATCATGACCAAGGCTA  677

seq1  GTCTTATAAAGGACAACACTTAATTGGGGCTGACTTACATGTTCAGAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAAGGACAACACTTAATTGGGGCTGACTTACATGTTCAGAAAT  727

seq1  TCAGTCCATTATCATCAAGGTAGAAGCATGGTAGCTTCTAGACAGGTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCATTATCATCAAGGTAGAAGCATGGTAGCTTCTAGACAGGTATG  777

seq1  GTGCAGGAGAAGCTGATAGTTCTACATCAACATCTGAAGGCTTCTAGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGAAGCTGATAGTTCTACATCAACATCTGAAGGCTTCTAGCTG  827

seq1  AATACCAGCTTCCAAGCAGCTAGGATGAGGGTCTTAAATCCCACACCCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCTTCCAAGCAGCTAGGATGAGGGTCTTAAATCCCACACCCAC  877

seq1  AGTTACAAACATATTCCAACAAGGAAACACCTACTCCAACAGGGCCATAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAACATATTCCAACAAGGAAACACCTACTCCAACAGGGCCATAC  927

seq1  CTTCTTCTAATGCCACTCCCTGAGTGAATCTTAGCTTGGGTCCCTAAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTAATGCCACTCCCTGAGTGAATCTTAGCTTGGGTCCCTAAAAC  977

seq1  TCATATATCCATAAAGTTGTTGAAAGGAGAGGGAGGACAGAGGATTTCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATCCATAAAGTTGTTGAAAGGAGAGGGAGGACAGAGGATTTCTC  1027

seq1  ACCAGCCAGCTGAACCAAATCAAAGAATTC  1077
      ||||||||||||||||||||||||||||||
seq2  ACCAGCCAGCTGAACCAAATCAAAGAATTC  1057