BAC Information

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BAC

Clone NameB6Ng01-035E04
Chromosome3 (Build37)19 (Build37)
Map Location 41,059,147 - 41,059,73735,957,387 - 35,957,658
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035E04.bB6Ng01-035E04.g
ACCDH863777DH863778
length671272
definitionDH863777|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E04, 5' end.DH863778|Mus musculus domesticus DNA, BAC clone: B6Ng01-035E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,147 - 41,059,737)(35,957,387 - 35,957,658)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggggtccagcttcttgagctctttgtatatattggatattactccc
ctatctgatttaggatagacaaagatcttttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgcctcacagaagctttacaatttta
tgaggtcccatttgtctattctcgatcttacagcacaagccattgctgtt
ctgttcaggaattttccccctctataagtttctctgtctataagtttctc
ctctataagtttcactgtccctggttttatgtggagttccttaacccact
tagatttgaccttagtacaaggagataggaatggatcaattcgcattcat
ctatatgataaccaccggcttgttcccgtaccatatattgaaaatgctgt
cttttttccactggatggttttagctcccttgtaaaagatcaagtgacca
taggtgtgtgggttcatttctgggtcttcaattctattccattggtctac
ttgtctgtcgctataccagtaccgtgcagtttttatcataattgctgtgc
agtacagctttaggtcggacatggtgattcccccagaggttcttttatca
tttgagaaaatttttgctatc
attctcaagattcccaaacatccttcccagaatcctacagcatacgcgtg
cacacgcgcgcgagcacacacacacacacacacacacacacacacacaca
cacgagtgggtgtatcacagaatgattttgagatctgatctttctaaatc
tagcacctgaactgtggaggttcccttggtgttccaaataatttgaaata
aaacaattggtctcaatgtttcttgtacactgaggggggagaaggagtgc
agagggagggggagagagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059147_41059737
seq2: B6Ng01-035E04.b_45_631 (reverse)

seq1  TGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGG  50
      |||||||||||||| ||||||||||||| |||||||||| ||||||||||
seq2  TGATAAAAACTGCACGGTACTGGTATAGCGACAGACAAGTAGACCAATGG  50

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  100
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  100

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  150
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  150

seq1  ACAAATGGTGCTGGCACAA-CTGGTTGTTATCATGTAGAAGAATGCGAAT  199
      | | ||||| | || |||| | ||| |||||||| |||| ||||||||||
seq2  ATATATGGTACGGGAACAAGCCGGTGGTTATCATATAGATGAATGCGAAT  200

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  249
      ||||||| ||||||||||||||||||||||||||||||||||| | ||||
seq2  TGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGGTTAAGG  250

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  299
      ||| |||||||||||||| |||| |||||||||||||||||||| |    
seq2  AACTCCACATAAAACCAGGGACAGTGAAACTTATAGAGGAGAAACTTATA  300

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  349
       | ||      ||| |     | ||||| |||||||||| | ||||||||
seq2  GACAG------AGAAACTTATAGAGGGGGAAAATTCCTGAACAGAACAGC  344

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  399
      |||||||||||||||||||| |||||||||||||||||||||||| ||| 
seq2  AATGGCTTGTGCTGTAAGATCGAGAATAGACAAATGGGACCTCATAAAAT  394

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCA  448
      || ||||||||||  |||||||||||||||||||||||||||||||  ||
seq2  TGTAAAGCTTCTGTGAGGCAAAAGACACCGTCAATAAGACAAAAAGACCA  444

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  498
      |||||||||||||||| |||||||  |||||||||||||||||||||| |
seq2  CCAACAGATTGGGAAAAGATCTTTGTCTATCCTAAATCAGATAGGGGAGT  494

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  548
      |||||||||||||||  |||| ||||||||| ||||  ||||||||||||
seq2  AATATCCAATATATACAAAGAGCTCAAGAAGCTGGACCCCAGAAAATCAA  544

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  591
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  587

seq1: chr19_35957387_35957658
seq2: B6Ng01-035E04.g_73_344

seq1  ATTCTCAAGATTCCCAAACATCCTTCCCAGAATCCTACAGCATACGCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGATTCCCAAACATCCTTCCCAGAATCCTACAGCATACGCGTG  50

seq1  CACACGCGCGCGAGCACACACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCGCGCGAGCACACACACACACACACACACACACACACACACACA  100

seq1  CACGAGTGGGTGTATCACAGAATGATTTTGAGATCTGATCTTTCTAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTGGGTGTATCACAGAATGATTTTGAGATCTGATCTTTCTAAATC  150

seq1  TAGCACCTGAACTGTGGAGGTTCCCTTGGTGTTCCAAATAATTTGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTGAACTGTGGAGGTTCCCTTGGTGTTCCAAATAATTTGAAATA  200

seq1  AAACAATTGGTCTCAATGTTTCTTGTACACTGAGGGGGGAGAAGGAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTGGTCTCAATGTTTCTTGTACACTGAGGGGGGAGAAGGAGTGC  250

seq1  AGAGGGAGGGGGAGAGAGAGAA  272
      ||||||||||||||||||||||
seq2  AGAGGGAGGGGGAGAGAGAGAA  272