BAC Information

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BAC

Clone NameB6Ng01-035J11
Chromosome3 (Build37)14 (Build37)
Map Location 41,059,101 - 41,059,73751,885,123 - 51,886,070
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J11.bB6Ng01-035J11.g
ACCDH864015DH864016
length638945
definitionDH864015|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J11, 5' end.DH864016|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,101 - 41,059,737)(51,885,123 - 51,886,070)
sequence
gaattctttgtttagctctgagccccattttttaaaggggttatttgata
ttctggagcccaccttcttgagttctttatatatattgggtattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattcccgatcttacagcaaaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttctccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttggatttgaccttagtacaaggagataggaatggatgaatttgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagttttatcacaattgct
ctgtagtaaagctttaggtcagggacggtgattccatc
gaattcaaagtttctccctgggcactcttgtcagacccaaataattaaat
tctgctaccattagcactatcagtacaaagcctgtaaattgcctgctgct
atcagaggcagcaggtgagggtattggctgctctcagaaacatcagggtg
agggtatcagctgctattagcacagaccccaatggccattgccatccctt
gctgccttcctcactttacctggatgtcaagctggcattcaacataattt
ctattgtaactacttcacctgtctgtggttgaaactagaatgctaaaaag
gaagtggccatgtcctagaaatagaaatactaatagaacagataactaag
aatagaaaagtaggcgagccacttcagcagagagaggtgtcaggaggtat
caaaagtatagctgaagctgaaggggcagtttaaggaccatactctgaag
tgaggttatcaaaccttcccatgtagcctatttagacaggatcatgaatc
taggaatgaaggagtatacgcagtctgtcccacttatcagctgccctgct
gcggctacaagaacttcattcccgggagaagtttggttggattcttgatt
ctttatttcaaaaaaagcttctttcctggtgcagccaaactgtaaactgg
ttacaccagcaaacactcacaacctactccttctctgcctttgtacaggg
ccgcggtgaaagtctgaagggaaaaaggatcaacactaaaacgtctgggt
ttggtgatggcaataaaaagcttagaaatctgcttctttgggagtaagag
catgttatagctcctgtttgtacgcctggggggtggaaaccagggaacgt
gcgcccctggccgccaatgcaaaactcctgggaggtgggagggctggttc
tcctggtgtccaggtggatactaaaggtttgttagagggggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059101_41059737
seq2: B6Ng01-035J11.b_49_685 (reverse)

seq1  GGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT  50
      | |||||||||| | |||||||||||||||||||||||||||||||||||
seq2  GATGGAATCACCGTCCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT  50

seq1  AAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATA  100
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAATA  99

seq1  GAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTC  150
      ||||||||||| |||||| ||| |||||||||||||||||||||||||| 
seq2  GAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTT  149

seq1  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAA  199

seq1  ATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATC  250
      |||||||||||||||||||| |||||||||||||||||||| |||| |||
seq2  ATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGCAAATTCATC  249

seq1  CACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGC  300
      || |||||||||||||||||||||||||||| |||||||||||||||| |
seq2  CATTCCTATCTCCTTGTACTAAGGTCAAATCCAAGTGGATCAAGGAACTC  299

seq1  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAGAAG  349

seq1  CCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGG  400
      ||| |||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGG  399

seq1  CTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAA  450
      ||| ||||||||||| | |||| |||||||||||||||||||||||||||
seq2  CTTTTGCTGTAAGATCGGGAATTGACAAATGGGACCTCATGAAACTGCAA  449

seq1  AGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAAC  499
      |||||||||||||||||||| || |||||||||||||||||| |||||||
seq2  AGCTTCTGCAAGGCAAAAGATACTGTCAATAAGACAAAAAGGCCACCAAC  499

seq1  AGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATAC  549

seq1  CCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAAC  599
      ||||||||||| ||||||||||||||||||  ||||||| ||||||||||
seq2  CCAATATATATAAAGAACTCAAGAAGGTGGGCTCCAGAATATCAAATAAC  599

seq1  CCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  637
      ||| ||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  637

seq1: chr14_51885123_51886070
seq2: B6Ng01-035J11.g_66_1010

seq1  GAATTCAAAGTTTCTCCCTGGGCACTCTTGTCAGACCCAAATAATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTTCTCCCTGGGCACTCTTGTCAGACCCAAATAATTAAAT  50

seq1  TCTGCTACCATTAGCACTATCAGTACAAAGCCTGTAAATTGCCTGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACCATTAGCACTATCAGTACAAAGCCTGTAAATTGCCTGCTGCT  100

seq1  ATCAGAGGCAGCAGGTGAGGGTATTGGCTGCTCTCAGAAACATCAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGCAGCAGGTGAGGGTATTGGCTGCTCTCAGAAACATCAGGGTG  150

seq1  AGGGTATCAGCTGCTATTAGCACAGACCCCAATGGCCATTGCCATCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCAGCTGCTATTAGCACAGACCCCAATGGCCATTGCCATCCCTT  200

seq1  GCTGCCTTCCTCACTTTACCTGGATGTCAAGCTGGCATTCAACATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCCTCACTTTACCTGGATGTCAAGCTGGCATTCAACATAATTT  250

seq1  CTATTGTAACTACTTCACCTGTCTGTGGTTGAAACTAGAATGCTAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAACTACTTCACCTGTCTGTGGTTGAAACTAGAATGCTAAAAAG  300

seq1  GAAGTGGCCATGTCCTAGAAATAGAAATACTAATAGAACAGATAACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCCATGTCCTAGAAATAGAAATACTAATAGAACAGATAACTAAG  350

seq1  AATAGAAAAGTAGGCGAGCCACTTCAGCAGAGAGAGGTGTCAGGAGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGTAGGCGAGCCACTTCAGCAGAGAGAGGTGTCAGGAGGTAT  400

seq1  CAAAAGTATAGCTGAAGCTGAAGGGGCAGTTTAAGGACCATACTCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATAGCTGAAGCTGAAGGGGCAGTTTAAGGACCATACTCTGAAG  450

seq1  TGAGGTTATCAAACCTTCCCATGTAGCCTATTTAGACAGGATCATGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTATCAAACCTTCCCATGTAGCCTATTTAGACAGGATCATGAATC  500

seq1  TAGGAATGAAGGAGTATACGCAGTCTGTCCCACTTATCAGCTGCCCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGAAGGAGTATACGCAGTCTGTCCCACTTATCAGCTGCCCTGCT  550

seq1  GCGGCTACAAGAACTTCATTCCCGGGAGAAGTTTGGTTGGATTCTTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTACAAGAACTTCATTCCCGGGAGAAGTTTGGTTGGATTCTTGATT  600

seq1  CTTTA-TTCCAGAAAAGC-TCTTTCCT-GTGCAGCCAAACTGTAAAACTG  647
      ||||| ||| | |||||| |||||||| ||||||||||||||| ||||||
seq2  CTTTATTTCAAAAAAAGCTTCTTTCCTGGTGCAGCCAAACTGT-AAACTG  649

seq1  GTTACACCAGCAAACACTCACAACCTACTCCTTCTCTGCCTTTGTACAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTACACCAGCAAACACTCACAACCTACTCCTTCTCTGCCTTTGTACAGG  699

seq1  GCCGCGGTGTAAGTCTGAAGGGAAAAA-GATCAACACTAAAACGTCTGGG  746
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  GCCGCGGTGAAAGTCTGAAGGGAAAAAGGATCAACACTAAAACGTCTGGG  749

seq1  TTT-GTGATGGCAATAATAAGCTCAGAAATCTGC-TCTTTGGGAGTTAGA  794
      ||| ||||||||||||| ||||| |||||||||| ||||||||||| |||
seq2  TTTGGTGATGGCAATAAAAAGCTTAGAAATCTGCTTCTTTGGGAGTAAGA  799

seq1  GCATGTTTATGCTTCTGTTCTGTACGCCATGTGGGCTGG-AACCAGGTGA  843
      |||||||   ||| ||||| |||||||| || ||| ||| ||||||| ||
seq2  GCATGTTATAGCTCCTGTT-TGTACGCC-TGGGGGGTGGAAACCAGG-GA  846

seq1  ACGTGCGCCCCCTGCCGGCCAATGCAGAAACTCCTGGGAGGTGGAGTGGC  893
      ||||||| |||||| | ||||||||| ||||||||||||||||| | || 
seq2  ACGTGCG-CCCCTGGCCGCCAATGCA-AAACTCCTGGGAGGTGG-GAGGG  893

seq1  CTGGTTCTCCTGCTGTCCCAGGCTGCATACTAAAGGTTTTGTTATGAGGG  943
      |||||||||||| ||| ||||| || |||||||||| |||||||   |||
seq2  CTGGTTCTCCTGGTGT-CCAGG-TGGATACTAAAGG-TTTGTTAGAGGGG  940

seq1  GCAGG  948
      |||||
seq2  GCAGG  945