BAC Information

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BAC

Clone NameB6Ng01-035N10
Chromosome3 (Build37)
Map Location 45,385,851 - 45,386,416
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N10.bB6Ng01-035N10.g
ACCDH864199DH864200
length1,108943
definitionDH864199|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N10, 5' end.DH864200|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatcttttcaacacttttatcatgaattagtgttggattttg
tcaaatgctttttcagcatgaaatgagatgctgagatgtggttttagtct
ttgacttggtttatatagtagattacattgatggaattccatatattgaa
ccatccctacatccctggattgaagtctacttgatcttgatgggtgatcc
ttttgatgtgttcttgaatttagttagtgagtattttattgagtaatttt
acattgacattcataagtgaaaatggtctgaagttctatctttgttgggt
ctttttttcttgttgtttaggtatcagagtaattgtggcttcatagaatg
aatgaggtagagtaccttctttttctattttctttaatcatttgaggaga
attgtaattagctcttctttgaaggtctgatagaactatgcactaaaccc
atctggtcctgggctttttcttggttgggagactattaatgactgcttgt
atttttttgggggaaatgggactgttaagatctttaatctgatcctgatt
taactttggtatatggtatctgtctaggaaattgtccatttcatgcaggt
tttccagttttgtttagtgtagacttttgtagtaggaactgatgatattt
ctgatttcctcaggttctgatgttttgtctcctttttcgttctttctttc
tttttctttttttgttaattagtatactgtccttgtgccctctagttact
ctggctaaggtttatctatcttgttgattttctcaagaaccagctcctca
tttgattcgttctttgtatagttctttttgtttcacttggttgatttcag
ccctaagttcggttatttcccgatgtctactccctcttgggtggattttc
ttcttttggttcagagctttaagtgtgctgtcagctacaatgatgctctg
tctagtctttgcagcactcaagctatgagttccttatgctgtttatgggt
ccatcattcgatgtggggtttcattcataaactcaaatgctcttatccgt
tctaattcttcttaccagtttacttgatggaagtcgtccactcctcagga
gttgcatc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgattgtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
tagggattttgtccctgtgcccttagtgagtctagctagggtttatctat
cttgtgattttctcaaagaccactcctcgtttggttaattctttgaatag
ttcttcttgtttccacttggttgatttcacccctgagtttgattatttcc
tgccgtctactcctctggggtgaatttgcttcttttttctagagctttta
gatgtgtgtcagctgctagtatgtgctctctccgttttcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45385851_45386416
seq2: B6Ng01-035N10.g_458_1012 (reverse)

seq1  TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTA  50
      |||||||||    |||||||||||||||||||||| |||| |||||||||
seq2  TCAAGAAAA---CGGAGAGAGCACATACTAGCAGC-TGAC-ACACATCTA  45

seq1  AAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCA  100
      ||||||||||||||||  ||||||||||||||| ||||||||||||||||
seq2  AAAGCTCTAGAAAAAA--GAAGCAAATTCACCCCAGAGGAGTAGACGGCA  93

seq1  GGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA  143

seq1  CTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAAC  200
      |||||||||||||||||||||||||||||  | |||||||||||||| ||
seq2  CTATTCAAAGAATTAACCAAACGAGGAGT--GGTCTTTGAGAAAATC-AC  190

seq1  AAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAAT  250
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AAGATAGATAAACCC-TAGCTAGACTCACT-AAGGGCACAGGGACAAAAT  238

seq1  -CCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT  288

seq1  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGAAATCCAAAACACAATCAGATCCTTCTACAAAAGGCTATACTCAAC  338

seq1  AAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG  388

seq1  TACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCC  438

seq1  CCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCC  488

seq1  AGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC  549
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC  538

seq1  TAACTCCAGTTCTGCAC  566
      |||||||||||||||||
seq2  TAACTCCAGTTCTGCAC  555