BAC Information

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BAC

Clone NameB6Ng01-036A20
Chromosome3 (Build37)
Map Location 28,926,432 - 29,055,711
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A20.bB6Ng01-036A20.g
ACCDH864351DH864352
length1,048889
definitionDH864351|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A20, 5' end.DH864352|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,054,639 - 29,055,711)(28,926,432 - 28,927,342)
sequence
gaattctgccccagacctaggacagatgtcatatttttgatcacttctca
ggaccactttctatagtgaaaacaatttttgttgctcctcgacctacggt
gatcttcctgtgtctgtagaaaatatactagcatttttgagaaacctttc
ctctcttcctggtataacatagacaaacatcctatttcttttaggacaga
atcatcctccatcatagcaatggtgaattgcctaataagcataggtttgc
tggtctctgcttcccaccagactaagattaaactgtgttttcacatctga
agcatctactacacagcctgctatataaatatttactaactgggagactc
aatataaggttgattgactgacctacagagtgtatgaacaaatatactca
cagaaaataaggaaacttgaagcctccccatggccacattatcctattac
ttgacttatgaacagagcaacaatggaaggtccggtagtgacatggaaat
gaggtgtgacttgtgtgtgaaattcatcagttcatgtaacagcccagatc
tctctgaagccagagcatttcaaaagaaaaaacttcatcaccagctctct
cgcttgatttgcatgtgttcaaatcttcaaagtatttcttttgatttctt
taaccaatagtgatttcagaaagctcttcattacttcctaattgtccaaa
ttcattttcttcatttgccttattagaggcaggttttttttttttttcaa
atgagttaagtagatcagcaattttagaatcattactaacttcaagcatg
gtctcgctttttaggacatctccactctgaacaggactacagtcttcatc
ttaaaaagggcaactggcttatttttagagttctctctaccatacatgat
ggtagacactttgctatagctacaactactgtacgtgagctcatgatctg
atatgtgcatgacatctgatctgatgttatacaggattctctcataagtt
agtatcaaatatagtaataagatcacacacacatctaaatattgcata
gaattctagatggtgggagtttggagatggtatgtggcttgggataaaga
acaatgcatagcaaagaaaataattattttagggagaaacttttctttaa
atatgaatccaggaaaaacttgagctgagaaccaaactttatgtactctg
tatgagtgaattaggtttttttttaagttttgttttatatataattttta
gtttcttgtcacataaatgggctgatactttattctgccacagaggactc
ttttggcacttacatggctcctatgtgcaaggtatcacgtttattatttg
gtcactgctcctcagatgatgctcttggacagtgaagaagatttgactaa
ggagctaggccctgggctggccaagtgcatgggaccatcacagacagaca
cagtaggcagctggcaagtggcctcttgcaaccacaggtaggtccatctt
ctcttagccactgacacatgtctgctcatgagctttcgttgtgtttgcca
catagcacagtaattgccattaaaaatagtcactgataatgaaaactatt
cacaataccatgcttattttaaaactctgatttgaacatgttagttatca
ctgacaataacttttcgattgtgttaaacgtgattttgaaacaagtcatt
ccaaccagtagatatttgaacaaagggggacatgagtaaaaatgccgtgc
tattttttttacattttctgcctttttgttgtgttgtagatgaaggcaca
tataagatttggagtggctggtttggccagctgagtgcgagtgattccag
aacttctttgtcctccccatttggtacagagattgcagacctgtgctaga
gtgactgtttgtttgtttgtttgtttctgagctctgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29054639_29055711
seq2: B6Ng01-036A20.b_45_1092 (reverse)

seq1  TATGCAATATATTTAAGGATTGTGTGTGTGTGATCTTATTTACTTATATT  50
      ||||||  |||||||  ||   |||||||||||||||| |||| |||| |
seq2  TATGCA--ATATTTA--GA---TGTGTGTGTGATCTTA-TTAC-TATA-T  40

seq1  TTGATATTTACTAATGAGAGAATCCTGGTATACACATTCAGATCCAAGGA  100
      |||||| | ||| ||||||||||||| ||||| ||| |||||||    ||
seq2  TTGATACTAACTTATGAGAGAATCCT-GTATA-ACA-TCAGATC---AGA  84

seq1  TGTCATGCACATATCAGATCATGAGGCTCACGGTACAGTAAGTTTGTAGC  150
      |||||||||||||||||||||||| |||||| ||||||||   |||||| 
seq2  TGTCATGCACATATCAGATCATGA-GCTCAC-GTACAGTA--GTTGTAG-  129

seq1  CTATAGCAAAGTTGGTTCTACCATCATGTATGGTAAGAGAGAACTCTAAA  200
      ||||||||||||    |||||||||||||||||| |||||||||||||||
seq2  CTATAGCAAAGT---GTCTACCATCATGTATGGT-AGAGAGAACTCTAAA  175

seq1  AATAAGCCAGTTGCCCTTTTTAAGATGAAGACTGTAGTCCTGTTCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCAGTTGCCCTTTTTAAGATGAAGACTGTAGTCCTGTTCAGAGT  225

seq1  GGAGATGTCCTAAAAAGCGAGAACCATGCTTGAAGTTAGTAATGATTCTA  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGATGTCCTAAAAAGCGAG-ACCATGCTTGAAGTTAGTAATGATTCTA  274

seq1  AAATTGCTGATCTACTTAACTCATTTG-AAAAAAAAAAAAACCTGCCTCT  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATTGCTGATCTACTTAACTCATTTGAAAAAAAAAAAAAACCTGCCTCT  324

seq1  AATAAGGCAAATGAAGAAAATGAATTTGGACAATTAGGAAGTAATGAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCAAATGAAGAAAATGAATTTGGACAATTAGGAAGTAATGAAGA  374

seq1  GCTTTCTGAAATCACTATTGGTTAAAGAAATCAAAAGAAATACTTTGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGAAATCACTATTGGTTAAAGAAATCAAAAGAAATACTTTGAAG  424

seq1  ATTTGAACACATGCAAATCAAGCGAGAGAGCTGGTGATGAAGTTTTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACACATGCAAATCAAGCGAGAGAGCTGGTGATGAAGTTTTTTCT  474

seq1  TTTGAAATGCTCTGGCTTCAGAGAGATCTGGGCTGTTACATGAACTGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGCTCTGGCTTCAGAGAGATCTGGGCTGTTACATGAACTGATG  524

seq1  AATTTCACACACAAGTCACACCTCATTTCCATGTCACTACCGGACCTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACACACAAGTCACACCTCATTTCCATGTCACTACCGGACCTTCC  574

seq1  ATTGTTGCTCTGTTCATAAGTCAAGTAATAGGATAATGTGGCCATGGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTCTGTTCATAAGTCAAGTAATAGGATAATGTGGCCATGGGGA  624

seq1  GGCTTCAAGTTTCCTTATTTTCTGTGAGTATATTTGTTCATACACTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGTTTCCTTATTTTCTGTGAGTATATTTGTTCATACACTCTGT  674

seq1  AGGTCAGTCAATCAACCTTATATTGAGTCTCCCAGTTAGTAAATATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTCAATCAACCTTATATTGAGTCTCCCAGTTAGTAAATATTTAT  724

seq1  ATAGCAGGCTGTGTAGTAGATGCTTCAGATGTGAAAACACAGTTTAATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGCTGTGTAGTAGATGCTTCAGATGTGAAAACACAGTTTAATCT  774

seq1  TAGTCTGGTGGGAAGCAGAGACCAGCAAACCTATGCTTATTAGGCAATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGTGGGAAGCAGAGACCAGCAAACCTATGCTTATTAGGCAATTC  824

seq1  ACCATTGCTATGATGGAGGATGATTCTGTCCTAAAAGAAATAGGATGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTATGATGGAGGATGATTCTGTCCTAAAAGAAATAGGATGTTT  874

seq1  GTCTATGTTATACCAGGAAGAGAGGAAAGGTTTCTCAAAAATGCTAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTATACCAGGAAGAGAGGAAAGGTTTCTCAAAAATGCTAGTAT  924

seq1  ATTTTCTACAGACACAGGAAGATCACCGTAGGTCGAGGAGCAACAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACAGACACAGGAAGATCACCGTAGGTCGAGGAGCAACAAAAAT  974

seq1  TGTTTTCACTATAGAAAGTGGTCCTGAGAAGTGATCAAAAATATGACATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACTATAGAAAGTGGTCCTGAGAAGTGATCAAAAATATGACATC  1024

seq1  TGTCCTAGGTCTGGGGCAGAATTC  1073
      ||||||||||||||||||||||||
seq2  TGTCCTAGGTCTGGGGCAGAATTC  1048

seq1: chr3_28926432_28927342
seq2: B6Ng01-036A20.g_64_952

seq1  GAATTCTAGATGGTGGGAGTTTGGAGATGGTATGTGGCTTGGGATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGGTGGGAGTTTGGAGATGGTATGTGGCTTGGGATAAAGA  50

seq1  ACAATGCATAGCAAAGAAAATAATTATTTTAGGGAGAAACTTTTCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATAGCAAAGAAAATAATTATTTTAGGGAGAAACTTTTCTTTAA  100

seq1  ATATGAATCCAGGAAAAACTTGAGCTGAGAACCAAACTTTATGTACTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATCCAGGAAAAACTTGAGCTGAGAACCAAACTTTATGTACTCTG  150

seq1  TATGAGTGAATTAGGTTTTTTTTTAAGTTTTGTTTTATATATAATTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGAATTAGGTTTTTTTTTAAGTTTTGTTTTATATATAATTTTTA  200

seq1  GTTTCTTGTCACATAAATGGGCTGATACTTTATTCTGCCACAGAGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTCACATAAATGGGCTGATACTTTATTCTGCCACAGAGGACTC  250

seq1  TTTTGGCACTTACATGGCTCCTATGTGCAAGGTATCACGTTTATTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCACTTACATGGCTCCTATGTGCAAGGTATCACGTTTATTATTTG  300

seq1  GTCACTGCTCCTCAGATGATGCTCTTGGACAGTGAAGAAGATTTGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCTCCTCAGATGATGCTCTTGGACAGTGAAGAAGATTTGACTAA  350

seq1  GGAGCTAGGCCCTGGGCTGGCCAAGTGCATGGGACCATCACAGACAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGGCCCTGGGCTGGCCAAGTGCATGGGACCATCACAGACAGACA  400

seq1  CAGTAGGCAGCTGGCAAGTGGCCTCTTGCAACCACAGGTAGGTCCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCAGCTGGCAAGTGGCCTCTTGCAACCACAGGTAGGTCCATCTT  450

seq1  CTCTTAGCCACTGACACATGTCTGCTCATGAGCTTTCGTTGTGTTTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCCACTGACACATGTCTGCTCATGAGCTTTCGTTGTGTTTGCCA  500

seq1  CATAGCACAGTAATTGCCATTAAAAATAGTCACTGATAATGAAAACTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACAGTAATTGCCATTAAAAATAGTCACTGATAATGAAAACTATT  550

seq1  CACAATACCATGCTTATTTTAAAACTCTGATTTGAACATGTTAGTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACCATGCTTATTTTAAAACTCTGATTTGAACATGTTAGTTATCA  600

seq1  CTGACAATAACTTTTCGATTGTGTTAAAACGTGATTTTGAAACAAGTCAT  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGACAATAACTTTTCGATTGTGTT-AAACGTGATTTTGAAACAAGTCAT  649

seq1  TCCAACCAGTAGATATTTGAACAAGGGGGGACATGAGTAAAAATGCCGTG  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCAACCAGTAGATATTTGAACAAAGGGGGACATGAGTAAAAATGCCGTG  699

seq1  CTATTTTTTTTACATTTTCTGCCTTTTTTGTTGTTGTTGTTAAGATGAAG  750
      ||||||||||||||||||||||| ||||||||| ||||||  ||||||||
seq2  CTATTTTTTTTACATTTTCTGCC-TTTTTGTTG-TGTTGT--AGATGAAG  745

seq1  GCACATATAAGATCTGGAGTTGGCTGGTTTGGCCAGGCTGAGTGCGAGTG  800
      ||||||||||||| ||||| ||||||||||||||| ||||||||||||||
seq2  GCACATATAAGATTTGGAG-TGGCTGGTTTGGCCA-GCTGAGTGCGAGTG  793

seq1  AATTCCAGAACTTCTTTGTCCTCCCCATTTTGGTACAGAGATTGCAAGAA  850
       |||||||||||||||||||||||||| ||||||||||||||||||   |
seq2  -ATTCCAGAACTTCTTTGTCCTCCCCA-TTTGGTACAGAGATTGCA--GA  839

seq1  CCTGGTGCTAGAGTTGACTGTTTTGTTTTGTTTTGTTTTGTTTTCTTGGA  900
      ||| ||||||||| |||||| |||||||   |||||||   |||||  ||
seq2  CCT-GTGCTAGAG-TGACTG-TTTGTTT--GTTTGTTT--GTTTCT--GA  880

seq1  AGGCTCTGCTA  911
        |||||||||
seq2  --GCTCTGCTA  889