BAC Information

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BAC

Clone NameB6Ng01-036B16
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,341 - 41,059,737129,216,895 - 129,217,876
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036B16.bB6Ng01-036B16.g
ACCDH864389DH864390
length811963
definitionDH864389|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B16, 5' end.DH864390|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,341 - 41,059,737)(129,216,895 - 129,217,876)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaaactgttggtggcct
tttttgtcatattgacagtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttgttaattctcgatcttacagcacaaaccattgctgt
tctattcaggaattttccatctgtgcctatatcttcaagggttttcccca
ctttcttctctagtttcagtgtctctggtttaatgtggagttccttgatc
cacttagacttgagctttgtacaaggagataagaatcaattcggcacaag
tcccttccgctccactcgagcaccggggtgccttgccagcggagtctccc
gacatccgcccacacaggattccccacgggatcctaagacctctggtgag
tggaacacaacttctgccaggaggcaggtttgaacaccagatatctgggc
accttcccttcaagaagagagcttgcctgcagagaatactctgcccactc
aaactaaggagagagctagcctcccaggtctgcttatagaggctaacaga
gtcacatgaggaacaagctctaaccagagacaactataacagctagcttc
aggagattaccagatgttgaaaggcaaacgtaagaatcctactaacagaa
atcaagaccactcactattcatcagaacgcagcactcccaccccacctag
tcctgggcacc
gaattcttgttccctcccctcacaatctccatgcctctttctctctctct
ctagagcagtgtttcggatgaagaggaaaaacagagcacagagggagatg
aggacaggaaaacagaagcaagaattgatgttcatctacactttaagaga
ggatgagagttggggtccagggccgaagaatacaaaggctttagaggaga
tttagatggctatacgaccctgcctcttgattggtaggaaatattttctc
tgagaacatggattggacaggatggagagatagcgcagtggttaagagta
tgtacagctcttgcaaaacattggcattcagtacccagaacccatgttga
acagctcacgactgcctgtaactccagctcccttgatctgactccttctg
gttttcgagggcactgccctcacatgtacccagtctccacatacacagtt
aaaaataaaataaatctttaaagggacagagtggagggtagtggtagaac
caactctagttgactccctgaaacataaaccttttagcttggttcagtgt
ggggcagggcaagttgaatttgccatttgaatcatcggtcattatagtag
cgcaaaacttttgggagcaaactccggtgcgagtatcctggaagctctgt
gtgggtcagtaggtgctcaatgcgctctatgctcttttcttcaactgcac
ccctggcggaagaatcgcctggctcttccacagacagcttcaaatcaatt
gtgctcaaacagaactcttgatgtacaggcctgggctgtacttctcccat
ttcctggttctgactacatggttcttaataacccagttgctcaagtgaaa
aagcaagtgcttgtcctgagtccctcctcttcctaacgctaccaccctat
atatcatgtgtttcgtggactgcctgcattgactcgtctgacccatccat
tcactgctctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059341_41059737
seq2: B6Ng01-036B16.b_45_436 (reverse)

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  50
      |||||||||    || ||||||||||||| ||| |||| |||||||||||
seq2  CGAATTGAT----TCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGAT  46

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  100
      |||||||| |||||| |||||||||||||||||||   ||||| ||||||
seq2  CAAGGAACTCCACATTAAACCAGAGACACTGAAAC---TAGAGAAGAAAG  93

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  150
      ||||||||| |||||||||||| | |||||  | |||||||||| |||||
seq2  TGGGGAAAACCCTTGAAGATATAGGCACAGATGGAAAATTCCTGAATAGA  143

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  200
      |||||||||| |||||||||||||| ||||||  ||||||||||||||||
seq2  ACAGCAATGGTTTGTGCTGTAAGATCGAGAATTAACAAATGGGACCTCAT  193

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  250
       ||| ||||||||||||| |||||||||||||| ||||||| ||||||||
seq2  AAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATATGACAAAAA  243

seq1  --GGCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAG  298
        | ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCAACAGTTTGGGAAAGGATCTTTACCTATCCTAAATCAGATAG  293

seq1  GGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAA  348
      ||||||||||||||| |||||| ||||||||||||||||||| | |||||
seq2  GGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAA  343

seq1  AATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  397
      ||||||| |||||||||||||||||||||||||| || |||||||||||
seq2  AATCAAACAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATT  392

seq1: chr2_129216895_129217876
seq2: B6Ng01-036B16.g_68_1030

seq1  GAATTCTTGTTCCCTCCCCTCACAATCTCCATGCCTCTTTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTCCCTCCCCTCACAATCTCCATGCCTCTTTCTCTCTCTCT  50

seq1  CTAGAGCAGTGTTTCGGATGAAGAGGAAAAACAGAGCACAGAGGGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAGTGTTTCGGATGAAGAGGAAAAACAGAGCACAGAGGGAGATG  100

seq1  AGGACAGGAAAACAGAAGCAAGAATTGATGTTCATCTACACTTTAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAAAACAGAAGCAAGAATTGATGTTCATCTACACTTTAAGAGA  150

seq1  GGATGAGAGTTGGGGTCCAGGGCCGAAGAATACAAAGGCTTTAGAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAGTTGGGGTCCAGGGCCGAAGAATACAAAGGCTTTAGAGGAGA  200

seq1  TTTAGATGGCTATACGACCCTGCCTCTTGATTGGTAGGAAATATTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGGCTATACGACCCTGCCTCTTGATTGGTAGGAAATATTTTCTC  250

seq1  TGAGAACATGGATTGGACAGGATGGAGAGATAGCGCAGTGGTTAAGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATGGATTGGACAGGATGGAGAGATAGCGCAGTGGTTAAGAGTA  300

seq1  TGTACAGCTCTTGCAAAACATTGGCATTCAGTACCCAGAACCCATGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCTCTTGCAAAACATTGGCATTCAGTACCCAGAACCCATGTTGA  350

seq1  ACAGCTCACGACTGCCTGTAACTCCAGCTCCCTTGATCTGACTCCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCACGACTGCCTGTAACTCCAGCTCCCTTGATCTGACTCCTTCTG  400

seq1  GTTTTCGAGGGCACTGCCCTCACATGTACCCAGTCTCCACATACACAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGAGGGCACTGCCCTCACATGTACCCAGTCTCCACATACACAGTT  450

seq1  AAAAATAAAATAAATCTTTAAAGGGACAGAGTGGAGGGTAGTGGTAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAAATCTTTAAAGGGACAGAGTGGAGGGTAGTGGTAGAAC  500

seq1  CAACTCTAGTTGACTCCCTGAAACATAAACCTTTTAGCTTGGTTCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAGTTGACTCCCTGAAACATAAACCTTTTAGCTTGGTTCAGTGT  550

seq1  GGGGCAGGGCAAGTTGAATTTGCCATTTGAATCATCGGTCATTATAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGGCAAGTTGAATTTGCCATTTGAATCATCGGTCATTATAGTAG  600

seq1  CGCAAAAACTTTTGGAGCAAACTCCGGTGCGAGTATCCTGGAAGCTCTGT  650
      |||||||  ||| |||||||||||||||||||||||||||||||||||||
seq2  CGCAAAACTTTTGGGAGCAAACTCCGGTGCGAGTATCCTGGAAGCTCTGT  650

seq1  GTGGGTTCAGTAGGTGCCTCAGATGCGCTCTATGCTCATATCTTCAACTG  700
      ||||| |||||||||| |||| ||||||||||||||| | ||||||||||
seq2  GTGGG-TCAGTAGGTG-CTCA-ATGCGCTCTATGCTCTTTTCTTCAACTG  697

seq1  CACCCCT-GCGGAAGAGTCGCCTGGCTCTTCCACAGACAGCTTCAAATCA  749
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  CACCCCTGGCGGAAGAATCGCCTGGCTCTTCCACAGACAGCTTCAAATCA  747

seq1  A-TGTGCTCCAAACAGAACTCTTGATGTACAGGCCTGGCCTGTACCTCTC  798
      | |||||| ||||||||||||||||||||||||||||| |||||| ||||
seq2  ATTGTGCT-CAAACAGAACTCTTGATGTACAGGCCTGGGCTGTACTTCTC  796

seq1  CCAGTTTCCTGGTTCTGACTACATGGTTCTTTAATTACCCAGTTGCTCAA  848
      ||| ||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CCA-TTTCCTGGTTCTGACTACATGGTTC-TTAATAACCCAGTTGCTCAA  844

seq1  GTGAAAAGCCAAGTGCTTGTCCTGAGTCCCTCCCTCTTCCCTTACCGCTA  898
      |||||||  |||||||||||||||||||||| ||||||||  || |||||
seq2  GTGAAAAAGCAAGTGCTTGTCCTGAGTCCCT-CCTCTTCC--TAACGCTA  891

seq1  CCACCCTATTTATCAGTGTGTTTCGTGGACTGGCCCTGCAATGGACCTCG  948
      ||||||||| ||||| ||||||||||||||||  |||||| ||   ||||
seq2  CCACCCTATATATCA-TGTGTTTCGTGGACTG--CCTGCATTG--ACTCG  936

seq1  TCTTTGTACCCATCTCATTTCAACTGCTTCTCAG  982
      |||    ||||||| ||||   ||||| ||||||
seq2  TCT---GACCCATC-CATT--CACTGC-TCTCAG  963