BAC Information

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BAC

Clone NameB6Ng01-036C06
Chromosome3 (Build37)
Map Location 98,821,612 - 98,895,588
singlet/doubletdoublet
Overlap genenone
Upstream geneNotch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
Downstream geneLOC668557, Wars2, Tbx15, M6pr-ps, Spag17, LOC623045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C06.bB6Ng01-036C06.g
ACCDH864411DH864412
length951995
definitionDH864411|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C06, 5' end.DH864412|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,821,612 - 98,822,575)(98,894,595 - 98,895,588)
sequence
gaattcaatagctggtaatggtgttcagcaccttttgatagggtgtgttt
tgccattagatgaaatctttgttcaaatatctattccttatcagtaatta
aattcttattcatgtgcagggaaattgccaataagtcatgagggggaaaa
gtaataaactagaggacctgcttctaaatcctaggcactgttcttgacca
cagtacttttgttcgtcttgtaaacaaatcaggagcagtgcattctggac
tttctgcaagaggtctggatagcatcaggattcacaaagccagaagtgag
ccactctgtcttgggctgagattctgctgaggagtaagtagcaaagtgta
cagagaagcgggtagaagaccaagtgctcagatgcatggctcacgtgcct
gagaccacagggtgtgttcaggaagcttgcagggatgcttggaggttgtg
gcacagggatgggtgtgaaaagggacgtggggaagtgggacagttctcag
gcaaaggttagaattgtgagatcattttaactttctattcattcttgcct
ctaatgaattgtgttctattgtgagagtttgttttgatcagctaactacc
tcaaggttagaaagtttagactttcattctgtttgaatatattgaatctt
taattgcatgtttattcaggaaaagcagaaggccacattttgtattttag
gaacagtcttttatgttcatacatacatgttcttgatgtttgtcaagttt
atttcctgataaagttgatctgagagggagagacagggtttagtacagaa
gggataagattttaagactcatctagtctaaattagaccacagtcatttt
gttgtgtgtgtgttaaactgagtctcttttaatcagatcagttgggacag
acttctaagacgtgcttggtgaaaattgtacttttcactatgatttgact
t
gaattctcagcacttgccttttgtatcttcttctctagaacatcagtctg
tggtctttaccaatcttagaccttcaggcctcatcttctctgcatagtga
gacactgagctagttggcttccctttctccaaggtatagcctggacattt
gcaaggccgggcaatcttaggctcctgtcatttgtgtctggtctcccagg
gattgtggttctttgtcatctgatgttcaaaaatcaatgtttgtctacgt
tttagagctatgatagacagcatggtaaatgtaatcctttttacttctca
tgcatttctttaagtcttatattctctacatttgaataatacatctggaa
tttatttttgatgagagaaatatagttttattttcccccttcatagccag
aaagttccccaacaccattctttgaattcttcaatctttacccagtttga
tatgtcaccttcatgacaagccaaaacttgataggcatttgaatctgttt
ctgaactattatgctgcatgtatttttaatttttattgaatatcaaaccc
ttatcatttattgaagtttcaaaatatactgcactatcttatgagagata
gtatttttttaatttctttctatttatttagagattttctgcatagcctg
ttatttttgaaaaattttaatatcattttcaaattcttaaatactatttt
ggggggcaagattactttaaatggagagaactgacataaatttggaagtg
gcagagaaaaagagcaggaaaataccagttaaccgctttagtatttgttg
taaaatgagagaacaatgaacagaacctggaatggaggaggatggagatg
aaaatagaccaagggctcatgatccacgaatggtatatcagatccccggt
agatctctgtaggaaatgcagacttaccgagcatccaggataatgatgat
ggtagtcagtgggcatttgcactttcatgtgtcttctgaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98821612_98822575
seq2: B6Ng01-036C06.b_46_996

seq1  GAATTCAATAGCTGGTAATGGTGTTCAGCACCTTTTGATAGGGTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGCTGGTAATGGTGTTCAGCACCTTTTGATAGGGTGTGTTT  50

seq1  TGCCATTAGATGAAATCTTTGTTCAAATATCTATTCCTTATCAGTAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAGATGAAATCTTTGTTCAAATATCTATTCCTTATCAGTAATTA  100

seq1  AATTCTTATTCATGTGCAGGGAAATTGCCAATAAGTCATGAGGGGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATTCATGTGCAGGGAAATTGCCAATAAGTCATGAGGGGGAAAA  150

seq1  GTAATAAACTAGAGGACCTGCTTCTAAATCCTAGGCACTGTTCTTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAACTAGAGGACCTGCTTCTAAATCCTAGGCACTGTTCTTGACCA  200

seq1  CAGTACTTTTGTTCGTCTTGTAAACAAATCAGGAGCAGTGCATTCTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTTTGTTCGTCTTGTAAACAAATCAGGAGCAGTGCATTCTGGAC  250

seq1  TTTCTGCAAGAGGTCTGGATAGCATCAGGATTCACAAAGCCAGAAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAGAGGTCTGGATAGCATCAGGATTCACAAAGCCAGAAGTGAG  300

seq1  CCACTCTGTCTTGGGCTGAGATTCTGCTGAGGAGTAAGTAGCAAAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGTCTTGGGCTGAGATTCTGCTGAGGAGTAAGTAGCAAAGTGTA  350

seq1  CAGAGAAGCGGGTAGAAGACCAAGTGCTCAGATGCATGGCTCACGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCGGGTAGAAGACCAAGTGCTCAGATGCATGGCTCACGTGCCT  400

seq1  GAGACCACAGGGTGTGTTCAGGAAGCTTGCAGGGATGCTTGGAGGTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACAGGGTGTGTTCAGGAAGCTTGCAGGGATGCTTGGAGGTTGTG  450

seq1  GCACAGGGATGGGTGTGAAAAGGGACGTGGGGAAGTGGGACAGTTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGATGGGTGTGAAAAGGGACGTGGGGAAGTGGGACAGTTCTCAG  500

seq1  GCAAAGGTTAGAATTGTGAGATCATTTTAACTTTCTATTCATTCTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTTAGAATTGTGAGATCATTTTAACTTTCTATTCATTCTTGCCT  550

seq1  CTAATGAATTGTGTTCTATTGTGAGAGTTTGTTTTGATCAGCTAACTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAATTGTGTTCTATTGTGAGAGTTTGTTTTGATCAGCTAACTACC  600

seq1  TCAAGGTTAGAAGGTTTAGAC-TTCATTCTG-TTGAATATATTGAATC-T  647
      |||||||||||| |||||||| ||||||||| |||||||||||||||| |
seq2  TCAAGGTTAGAAAGTTTAGACTTTCATTCTGTTTGAATATATTGAATCTT  650

seq1  TAATTGCATG-TTAATCAGGAAAAGCAGAAGGCCACA-TGTGTATTTTAG  695
      |||||||||| ||| |||||||||||||||||||||| | ||||||||||
seq2  TAATTGCATGTTTATTCAGGAAAAGCAGAAGGCCACATTTTGTATTTTAG  700

seq1  GAACAGTCTTTTATGTTCATACATACATGTTCTTGATGTTTGTCAAGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTTTTATGTTCATACATACATGTTCTTGATGTTTGTCAAGTTT  750

seq1  A-TTCCTGATAAAGTTGATCTGAGAGGGAGAAGACATGGGTTTAGTACAG  794
      | |||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  ATTTCCTGATAAAGTTGATCTGAGAGGGAG-AGACA-GGGTTTAGTACAG  798

seq1  AAGGGATAAGATTTTAAGACTCATCTAGTCTAAAATTAGACCACAGTCAT  844
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGGGATAAGATTTTAAGACTCATCTAGTCT-AAATTAGACCACAGTCAT  847

seq1  TTTGTTGTGTGTGTGTTATACTGAGTCTCTTTTTAATCCAGATACAGTCT  894
      |||||||||||||||||| |||||||||| ||||||| ||||| |||| |
seq2  TTTGTTGTGTGTGTGTTAAACTGAGTCTC-TTTTAAT-CAGAT-CAGT-T  893

seq1  GGGGACCAGACTTCTTAAGACGTGGCTTGGGTGAGAAAATGGTTACTTTT  944
      |||   |||||||| |||||||| |||||   | |||||| | |||||||
seq2  GGG--ACAGACTTC-TAAGACGT-GCTTG---GTGAAAATTG-TACTTTT  935

seq1  TCCAACTATGATTTGGACTT  964
          |||||||||| |||||
seq2  ---CACTATGATTT-GACTT  951

seq1: chr3_98894595_98895588
seq2: B6Ng01-036C06.g_66_1060 (reverse)

seq1  TGTT-TTCAGAAGACACCATGAAAGTGCAAATGCCCACTGACTACCATTC  49
      |||| ||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TGTTGTTCAGAAGACA-CATGAAAGTGCAAATGCCCACTGACTACCA-TC  48

seq1  ATCATTACTCCTGTGATGCTCGGTTAAGTCTGCATTTCCTACAGAGATCT  99
      ||||||| ||||| ||||||||| ||||||||||||||||||||||||||
seq2  ATCATTA-TCCTG-GATGCTCGG-TAAGTCTGCATTTCCTACAGAGATCT  95

seq1  ACCGGGGATCTGATATACCATTCGTTGATCATGAGCCCTTGGTCTA-TCT  148
      ||||||||||||||||||||||||| |||||||||||||||||||| | |
seq2  ACCGGGGATCTGATATACCATTCGTGGATCATGAGCCCTTGGTCTATTTT  145

seq1  CATCTCCATCCTCCT-CATTCCAGGTTCTG-TCATTG-TCTCTCATTTTA  195
      ||||||||||||||| |||||||||||||| |||||| ||||||||||||
seq2  CATCTCCATCCTCCTCCATTCCAGGTTCTGTTCATTGTTCTCTCATTTTA  195

seq1  CAACAAATACTAAAGCTGTTTAACTTGTATTTTCCTGCTC-TTTTCTCTG  244
      |||||||||||||||| | |||||| |||||||||||||| |||||||||
seq2  CAACAAATACTAAAGC-GGTTAACTGGTATTTTCCTGCTCTTTTTCTCTG  244

seq1  CCACTTCCAAATTTATGTCAGTTCTCTACATTTAAAGTAATCTTG-CCCC  293
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CCACTTCCAAATTTATGTCAGTTCTCTCCATTTAAAGTAATCTTGCCCCC  294

seq1  CAAAATAGTATTTAAGAATTTGAAAATGATATTAAAATTTTTTCAAAAAT  343
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAAATAGTATTTAAGAATTTGAAAATGATATTAAAA-TTTTTCAAAAAT  343

seq1  AACAGGCTATGCAGGAAATCTCTAAATAAAATAGAAAGAAATT-AAAAAA  392
      |||||||||||||| |||||||||||| ||||||||||||||| ||||||
seq2  AACAGGCTATGCAGAAAATCTCTAAAT-AAATAGAAAGAAATTAAAAAAA  392

seq1  TACTATCTCTCATAAGATAGTGCAGTATATTTTGAAACTTCAATAAATGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTCTCATAAGATAGTGCAGTATATTTTGAAACTTCAATAAATGA  442

seq1  TAA-GGTTTGATATTCAATAAAAATTAAAAATACATGCAGCATAATAGTT  491
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTTTGATATTCAATAAAAATTAAAAATACATGCAGCATAATAGTT  492

seq1  CAGAAACAGATTCAAATGCCTATCAAGTTTTGGCTTGTCATGAAGGTGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAGATTCAAATGCCTATCAAGTTTTGGCTTGTCATGAAGGTGAC  542

seq1  ATATCAAACTGGGTAAAGATTGAAGAATTCAAAGAATGGTGTTGGGGAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTGGGTAAAGATTGAAGAATTCAAAGAATGGTGTTGGGGAAC  592

seq1  TTTCTGGCTATGAAGGGGGAAAATAAAACTATATTTCTCTCATCAAAAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTATGAAGGGGGAAAATAAAACTATATTTCTCTCATCAAAAAT  642

seq1  AAATTCCAGATGTATTATTCAAATGTAGAGAATATAAGACTTAAAGAAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAGATGTATTATTCAAATGTAGAGAATATAAGACTTAAAGAAAT  692

seq1  GCATGAGAAGTAAAAAGGATTACATTTACCATGCTGTCTATCATAGCTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGAAGTAAAAAGGATTACATTTACCATGCTGTCTATCATAGCTCT  742

seq1  AAAACGTAGACAAACATTGATTTTTGAACATCAGATGACAAAGAACCACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTAGACAAACATTGATTTTTGAACATCAGATGACAAAGAACCACA  792

seq1  ATCCCTGGGAGACCAGACACAAATGACAGGAGCCTAAGATTGCCCGGCCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGGAGACCAGACACAAATGACAGGAGCCTAAGATTGCCCGGCCT  842

seq1  TGCAAATGTCCAGGCTATACCTTGGAGAAAGGGAAGCCAACTAGCTCAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTCCAGGCTATACCTTGGAGAAAGGGAAGCCAACTAGCTCAGT  892

seq1  GTCTCACTATGCAGAGAAGATGAGGCCTGAAGGTCTAAGATTGGTAAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTATGCAGAGAAGATGAGGCCTGAAGGTCTAAGATTGGTAAAGA  942

seq1  CCACAGACTGATGTTCTAGAGAAGAAGATACAAAAGGCAAGTGCTGAGAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTGATGTTCTAGAGAAGAAGATACAAAAGGCAAGTGCTGAGAA  992

seq1  TTC  994
      |||
seq2  TTC  995