BAC Information

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BAC

Clone NameB6Ng01-036K22
Chromosome3 (Build37)
Map Location 44,301,795 - 44,302,896
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K22.bB6Ng01-036K22.g
ACCDH864774DH864775
length1,067878
definitionDH864774|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K22, 5' end.DH864775|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcctttaatctcctgttataatttatggttgataggagacttg
tgtattaaggttttgagtcaaatggaaaaaatattcctgaaatctagatg
actgttaattgaaattttacaaatttattaaattcggtaagggatcacac
tattataaatatttgagagtatatcattatagcagctgaaaagaaacact
atttgaacatgaatcattttacttatttctgacccaaagaaatttcatac
cttcagcatgaatatcttagtacatacaggtataaaaatacacatggtaa
ctgaatgcttgttgctaataaattacatattaatagatttcaaaattagg
atttccacaaacactagtaatactctgcttaatgcacataaaaaaagatt
aaaccactgcttcttactgacacctgtgttgtcatgctgtcttaagcagc
ttatatatacctagaaatgattggatatatacaatgggctatttataaac
attggacactaccagactttaatggttgatattatgtggataaaaaaaga
agatatcttactatctggaacaatatagacataggcagagtcacctatat
ttacaatgtactgaaaaatatgatcatgtacatgtgcaagcaaaatgttc
tgtgtgcaatagttgccactcgctattcataagaaagaccttatttaaaa
tcagtctctagactagaaaagagcaacaaaataaccaacttgtatccatt
attaataaatttgatttcaagttggctattttattcagattagtgaagta
gtagctatcataaaattaaattgagtgtccattgctataaatccaaccat
agttaagtgtaatggtttctaccttgagtgctctatcatctatacacttg
ctattcagagatgctatatactactctctatagaaactgattttacaaac
agtagcaaataaagctagagcagaatagtagtatctataatagtgttcat
tgtacgtaccacagtaaacatcatacattactaatataccaaatattctg
tggataaagtctaagta

gaattctcttcctttttggagtcttcctgtggttatatatcagggaggct
ggtcctcataaatgaagtctggcagtgttccttctgtttcttttttgtgg
aatagtttgagcagtatttgttttagttcttctttgaaagtctgatagaa
ttctctgctaataccatcaggcaccaggcttttttttttttttttttttt
tttttttttttttttttttgagggggggagcaaaagttaatgactccttt
gtttactttaggggttataaaactatttaaaaagtttacctgttcttgat
ttttttgttggtatctatctagaaaataatagatttcatttacatttttc
aattgggtagcatacaaacttttgagatataacctaatgattccttgaat
tttctcattgtctgttgttaagactcctttttcatttctgattttgttaa
tttggatactggctgcttaccttttaaattagtttggctaggaattttta
atcttggtgattttcctaaaaaaccagctctaggaagttttgattctttg
tgtccatttgatttatatagccctggattttctccggctgtctactcctc
ttgggggggttttcctttttcttcaatttttccaacttgactaaatttct
tcaactggattttttcattttaaaacttgtatatcatataattcctagta
gagaatatttatttattttttatgaaggtacttagtgttatgaaattcct
taagctgctttcatgggaatacaatatccgggattgttctaccttcattt
cagtgaatcagaaaggctgtaattttttttttattcttctggacccggga
tcataagtaaagagtgtgcagtttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44301795_44302896
seq2: B6Ng01-036K22.b_46_1112 (reverse)

seq1  TACTTATGACTTTTAATCCACAGAATATTTTTGTATATTATGTTAAAATT  50
      |||||| ||||||  |||||||||||| ||| |||||||| ||    | |
seq2  TACTTA-GACTTT--ATCCACAGAATA-TTTGGTATATTA-GT----AAT  41

seq1  GTATGGATGTTTTCCCTGTGTGTACGTACCAAATGAAACACTATTTATAG  100
      |||| |||||||   ||||| ||||||||  |||| ||||||| ||||| 
seq2  GTAT-GATGTTT--ACTGTG-GTACGTAC--AATG-AACACTA-TTATA-  82

seq1  GATACTTACTTATTTCTGCTCTAGCTTTTATTTTGCTACTGTTTTGTTAA  150
      ||||| ||||   |||||||||||||||   |||||||||| |||||  |
seq2  GATAC-TACT--ATTCTGCTCTAGCTTT--ATTTGCTACTG-TTTGT--A  124

seq1  AAATCAAGTTTCTATAAGAGAGTTAAGTATATAGCAATCTCCTGAAATAG  200
      ||||| ||||||||| |||||||  |||||||||| |||| ||| |||||
seq2  AAATC-AGTTTCTAT-AGAGAGT--AGTATATAGC-ATCT-CTG-AATAG  167

seq1  CAAGTGTATAGATGATAGAGCACTTCAAGGTAGAAACCATTACACTTAAC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGTGTATAGATGATAGAGCAC-TCAAGGTAGAAACCATTACACTTAAC  216

seq1  TATGGTTGGATTTATAGCAATGGACACTCAATTTAATTTTATGATAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGGATTTATAGCAATGGACACTCAATTTAATTTTATGATAGCTA  266

seq1  CTACTTCACTAATCCTGAATAAAATAGCCAACTTGAAATCAAATTTATTA  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTACTTCACTAAT-CTGAATAAAATAGCCAACTTGAAATCAAATTTATTA  315

seq1  ATAATGGATACAAGTTGGTTATTTTGTTGCTCTTTTCTAGTCTAGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGATACAAGTTGGTTATTTTGTTGCTCTTTTCTAGTCTAGAGACT  365

seq1  GATTTTAAATAAGGTCTTTCTTATGAATAGCGAGTGGCAACTATTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAATAAGGTCTTTCTTATGAATAGCGAGTGGCAACTATTGCACA  415

seq1  CAGAACATTTTGCTTGCACATGTACATGATCATATTTTTCAGTACATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATTTTGCTTGCACATGTACATGATCATATTTTTCAGTACATTGT  465

seq1  AAATATAGGTGACTCTGCCTATGTCTATATTGTTCCAGATAGTAAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGGTGACTCTGCCTATGTCTATATTGTTCCAGATAGTAAGATAT  515

seq1  CTTCTTTTTTTATCCACATAATATCAACCATTAAAGTCTGGTAGTGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTATCCACATAATATCAACCATTAAAGTCTGGTAGTGTCCA  565

seq1  ATGTTTATAAATAGCCCATTGTATATATCCAATCATTTCTAGGTATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAAATAGCCCATTGTATATATCCAATCATTTCTAGGTATATAT  615

seq1  AAGCTGCTTAAGACAGCATGACAACACAGGTGTCAGTAAGAAGCAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTTAAGACAGCATGACAACACAGGTGTCAGTAAGAAGCAGTGGT  665

seq1  TTAATCTTTTTTTATGTGCATTAAGCAGAGTATTACTAGTGTTTGTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTTTTTATGTGCATTAAGCAGAGTATTACTAGTGTTTGTGGAA  715

seq1  ATCCTAATTTTGAAATCTATTAATATGTAATTTATTAGCAACAAGCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATTTTGAAATCTATTAATATGTAATTTATTAGCAACAAGCATTC  765

seq1  AGTTACCATGTGTATTTTTATACCTGTATGTACTAAGATATTCATGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCATGTGTATTTTTATACCTGTATGTACTAAGATATTCATGCTGA  815

seq1  AGGTATGAAATTTCTTTGGGTCAGAAATAAGTAAAATGATTCATGTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGAAATTTCTTTGGGTCAGAAATAAGTAAAATGATTCATGTTCAA  865

seq1  ATAGTGTTTCTTTTCAGCTGCTATAATGATATACTCTCAAATATTTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTTCTTTTCAGCTGCTATAATGATATACTCTCAAATATTTATAA  915

seq1  TAGTGTGATCCCTTACCGAATTTAATAAATTTGTAAAATTTCAATTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGATCCCTTACCGAATTTAATAAATTTGTAAAATTTCAATTAACA  965

seq1  GTCATCTAGATTTCAGGAATATTTTTTCCATTTGACTCAAAACCTTAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAGATTTCAGGAATATTTTTTCCATTTGACTCAAAACCTTAATA  1015

seq1  CACAAGTCTCCTATCAACCATAAATTATAACAGGAGATTAAAGGAGGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCTCCTATCAACCATAAATTATAACAGGAGATTAAAGGAGGAAT  1065

seq1  TC  1102
      ||
seq2  TC  1067


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