BAC Information

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BAC

Clone NameB6Ng01-037L15
Chromosome3 (Build37)
Map Location 95,822,800 - 95,954,384
singlet/doubletdoublet
Overlap geneVps45, LOC100042908, Otud7b
Upstream genePsmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222
Downstream geneMtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037L15.bB6Ng01-037L15.g
ACCDH865500DH865501
length1,055868
definitionDH865500|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L15, 5' end.DH865501|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,953,311 - 95,954,384)(95,822,800 - 95,823,662)
sequence
gaattctgagcctcctgaatctatctcccaaatgctgggattataggcac
atgccaccatgtttggcaatctcccatttcttagtcttcagttccttttc
actcattgcaatctgatcctattctactctttatgccactgccccgtcca
cacacttcacctaagatccgatggactctggctctcatctttcacagcct
ttgtttatctcttttcctccttaaacattctaatttaccttccacaccac
tactttcacttattctctgaactcccctccccacaaaactggagtttcgg
caactatttgagtcttgatttcatcagggtgttatcttcacaggctgcaa
tcatatctactatatctatgtgttatactctaggattgaccctcccaggc
ccaaaactccttttcatttctatggtcacatatccagctgttcactgaaa
accaccacttatccacagtggctctaaattctgtattttaagatgtaaaa
cttaactcctgtctctctgcatgcaacaactatcacccaaatacccagac
taaaaaccagggagttactaagccgtttcttctcccagtcactatacacc
tacatgtctctatcaacaattactaagtataaactgcaaagcatctctct
ctctgactttactgaactcctcagatccagtagaattggggatattatat
tttttcccagtgatcaaatctaatggtttgtttcctgataatagtagctc
taagaatcttcagtgcccatggtatacaaggcctaccttccccctcaacc
ccctctaagtagttgctcctgatagacagtgcctcattctcttctccttt
attctattacttgcatgactactccctatgctctggtaaacaatggctat
ctttaatagcaaacctcctctgaggagtctttcttaactccctagccctc
ctcctctgaacatctcttgaatgctctatgttactctaagagacatatct
gatcaggttacgcatacctctcagcatgcagaggcaagacggccgatccc
tatag
gaattcaagtgtctgacctgcctctttagtctaggcggctccttacccct
cactgccacattaacattcctaaaacaacatacatttcctgtcactttcc
tgatcaaaaacttcaatttttttctattttcttataaaaaataaaaattc
cctagcacccccctcccaggttttccatacttctggtgttaaactgttta
ctgggctacacacaatcctgacagtgggccctgtgtggagctggctctac
agagagcgtgcggagcctcccttcgtgtacatatgctttatgtgaggctc
tccttgtgtgtttgctcctcatgaacacttgccagttctctctctctctc
ctcactctctctctctctctcacccccccctccagcgtcttatttccttg
cttctgttctacagttcctggtcatagcacttgagatggactctttggct
aagtacatattgaacatggctaatcaacagagacacccagggccatcagt
gggctttgttcatctgttttcaaagggcctgtctggttatcagaggctct
ctttctctgagcacagaacccacagcttgctagcaattcgccatgggcca
tgccttcagactctcagaccctcagctcacggtcttgggagctctgccgg
tgctagagcacacacttttactgtggtttggtcattagtctttccagtca
cagggggaggactggaggaccgagggggcctttacctttttgtgttgtgt
attgttgttcctcccaatacgaccctcactccagagtggtggcgttcaag
gttatagactggtaaagcctcttcataggtggctcctcccataataaaca
ccgataatatccttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95953311_95954384
seq2: B6Ng01-037L15.b_49_1103 (reverse)

seq1  CTATAGGGATCTGCCCGTCTCTGCCTCCTGCATGCTGAGATGTATGCCGC  50
      ||||||||||| | |||||| ||||| ||||||||||||| ||||||   
seq2  CTATAGGGATC-GGCCGTCT-TGCCT-CTGCATGCTGAGAGGTATGC--G  45

seq1  TACACCTGACTCAGATATGGTCTCTTTAGAGTAACATAGAGCATTTCAAA  100
      || |||||| |||||||| ||||| ||||||||||||||||||||   ||
seq2  TA-ACCTGA-TCAGATAT-GTCTC-TTAGAGTAACATAGAGCATT--CAA  89

seq1  GAGATGTTCAGAGGAGGGAAGGGCTAGGGAGGTTTAGAAAGACTCCTCAG  150
      |||||||||||||||||  ||||||||||| ||| |||||||||||||||
seq2  GAGATGTTCAGAGGAGG--AGGGCTAGGGA-GTTAAGAAAGACTCCTCAG  136

seq1  AGGAGGGTTTGCTATTAAAGATTAGCCATTGTTTACCAGGAGCATAGGGA  200
      |||| |||||||||||||||| |||||||||||||||| |||||||||||
seq2  AGGA-GGTTTGCTATTAAAGA-TAGCCATTGTTTACCA-GAGCATAGGGA  183

seq1  GTAGTCATTGCAAGTAATAGGAATAAAGGAGAAGAGAATGAGGCACTGTC  250
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGTCA-TGCAAGTAATA-GAATAAAGGAGAAGAGAATGAGGCACTGTC  231

seq1  TATCAGGAGCAACTACTTAGAGGGGGTTGAGGGGGAAGGTAGGCCTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAGCAACTACTTAGAGGGGGTTGAGGGGGAAGGTAGGCCTTGTA  281

seq1  TACCATGGGCACTGAAGATTCTTAGAGCTACTATTATCAGGAAACAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGGCACTGAAGATTCTTAGAGCTACTATTATCAGGAAACAAACC  331

seq1  ATTAGATTTGATCACTGGGAAAAAATATAATATCCCCAATTCTACTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTGATCACTGGGAAAAAATATAATATCCCCAATTCTACTGGAT  381

seq1  CTGAGGAGTTCAGTAAAGTCAGAGAGAGAGATGCTTTGCAGTTTATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGTTCAGTAAAGTCAGAGAGAGAGATGCTTTGCAGTTTATACTT  431

seq1  AGTAATTGTTGATAGAGACATGTAGGTGTATAGTGACTGGGAGAAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGTTGATAGAGACATGTAGGTGTATAGTGACTGGGAGAAGAAAC  481

seq1  GGCTTAGTAACTCCCTGGTTTTTAGTCTGGGTATTTGGGTGATAGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTAACTCCCTGGTTTTTAGTCTGGGTATTTGGGTGATAGTTGTT  531

seq1  GCATGCAGAGAGACAGGAGTTAAGTTTTACATCTTAAAATACAGAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGAGAGACAGGAGTTAAGTTTTACATCTTAAAATACAGAATTTA  581

seq1  GAGCCACTGTGGATAAGTGGTGGTTTTCAGTGAACAGCTGGATATGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGTGGATAAGTGGTGGTTTTCAGTGAACAGCTGGATATGTGAC  631

seq1  CATAGAAATGAAAAGGAGTTTTGGGCCTGGGAGGGTCAATCCTAGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATGAAAAGGAGTTTTGGGCCTGGGAGGGTCAATCCTAGAGTAT  681

seq1  AACACATAGATATAGTAGATATGATTGCAGCCTGTGAAGATAACACCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAGATATAGTAGATATGATTGCAGCCTGTGAAGATAACACCCTG  731

seq1  ATGAAATCAAGACTCAAATAGTTGCCGAAACTCCAGTTTTGTGGGGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCAAGACTCAAATAGTTGCCGAAACTCCAGTTTTGTGGGGAGGG  781

seq1  GAGTTCAGAGAATAAGTGAAAGTAGTGGTGTGGAAGGTAAATTAGAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGAGAATAAGTGAAAGTAGTGGTGTGGAAGGTAAATTAGAATGT  831

seq1  TTAAGGAGGAAAAGAGATAAACAAAGGCTGTGAAAGATGAGAGCCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGGAAAAGAGATAAACAAAGGCTGTGAAAGATGAGAGCCAGAGT  881

seq1  CCATCGGATCTTAGGTGAAGTGTGTGGACGGGGCAGTGGCATAAAGAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGATCTTAGGTGAAGTGTGTGGACGGGGCAGTGGCATAAAGAGTA  931

seq1  GAATAGGATCAGATTGCAATGAGTGAAAAGGAACTGAAGACTAAGAAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGATCAGATTGCAATGAGTGAAAAGGAACTGAAGACTAAGAAATG  981

seq1  GGAGATTGCCAAACATGGTGGCATGTGCCTATAATCCCAGCATTTGGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGCCAAACATGGTGGCATGTGCCTATAATCCCAGCATTTGGGAG  1031

seq1  ATAGATTCAGGAGGCTCAGAATTC  1074
      ||||||||||||||||||||||||
seq2  ATAGATTCAGGAGGCTCAGAATTC  1055

seq1: chr3_95822800_95823662
seq2: B6Ng01-037L15.g_70_937

seq1  GAATTCAAGTGTCTGACCTGCCTCTTTAGTCTAGGCGGCTCCTTACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTCTGACCTGCCTCTTTAGTCTAGGCGGCTCCTTACCCCT  50

seq1  CACTGCCACATTAACATTCCTAAAACAACATACATTTCCTGTCACTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCACATTAACATTCCTAAAACAACATACATTTCCTGTCACTTTCC  100

seq1  TGATCAAAAACTTCAATTTTTTTCTATTTTCTTATAAAAAATAAAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAAACTTCAATTTTTTTCTATTTTCTTATAAAAAATAAAAATTC  150

seq1  CCTAGCACCCCCCTCCCAGGTTTTCCATACTTCTGGTGTTAAACTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCCCCCTCCCAGGTTTTCCATACTTCTGGTGTTAAACTGTTTA  200

seq1  CTGGGCTACACACAATCCTGACAGTGGGCCCTGTGTGGAGCTGGCTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACACACAATCCTGACAGTGGGCCCTGTGTGGAGCTGGCTCTAC  250

seq1  AGAGAGCGTGCGGAGCCTCCCTTCGTGTACATATGCTTTATGTGAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCGTGCGGAGCCTCCCTTCGTGTACATATGCTTTATGTGAGGCTC  300

seq1  TCCTTGTGTGTTTGCTCCTCATGAACACTTGCCAGTTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGTGTTTGCTCCTCATGAACACTTGCCAGTTCTCTCTCTCTCTC  350

seq1  CTCTCTCTCTCTCTCTCTCTCACCCCCCCCTCCAGCGTCTTATTTCCTTG  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTCTCTCTCTCTCTCACCCCCCCCTCCAGCGTCTTATTTCCTTG  400

seq1  CTTCTGTTCTACAGTTCCTGGTCATAGCACTTGAGATGGACTCTTTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCTACAGTTCCTGGTCATAGCACTTGAGATGGACTCTTTGGCT  450

seq1  AAGTACATATTGAACATGGCTAATCAACAGAGACACCCAGGGCCATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATATTGAACATGGCTAATCAACAGAGACACCCAGGGCCATCAGT  500

seq1  GGGCTTTGTTCATCTGTTTTCAAAGGGCCTGTCTGGTTATCAGAGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTGTTCATCTGTTTTCAAAGGGCCTGTCTGGTTATCAGAGGCTCT  550

seq1  CTTTCTCTGAGCACAGAACCCACAGCTTGCTAGCAATTCGCCAT-GGCCA  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTCTCTGAGCACAGAACCCACAGCTTGCTAGCAATTCGCCATGGGCCA  600

seq1  TGCC-TCAGACTCTCAGACCCTCAGCTCACGGTCTT-GGAGCTCTGCCGG  647
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCCTTCAGACTCTCAGACCCTCAGCTCACGGTCTTGGGAGCTCTGCCGG  650

seq1  TGCTAGAGCACACAC-TTTACTGTGGTTTGGTCATTAGTCTTTCCAAGTC  696
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TGCTAGAGCACACACTTTTACTGTGGTTTGGTCATTAGTCTTTCC-AGTC  699

seq1  ACA-GGGGAGGACTGGAGGACCGAGGGGGTCTTTTACCTTTTTGTGTTGT  745
      ||| ||||||||||||||||||||||||| | ||||||||||||||||||
seq2  ACAGGGGGAGGACTGGAGGACCGAGGGGG-CCTTTACCTTTTTGTGTTGT  748

seq1  GTATTGTTGTTCCTCCCAGAACGATCCTCACTCCAGGAGTGGTGCGGTTC  795
      ||||||||||||||||||  |||| |||||||||| ||||||||  ||||
seq2  GTATTGTTGTTCCTCCCAATACGACCCTCACTCCA-GAGTGGTGGCGTTC  797

seq1  -AGGTTATAGACTGTCAGAGCCTCTTCATAGGTGGCTCCTCCAATAATAA  844
       |||||||||||||  | |||||||||||||||||||||||| |||||||
seq2  AAGGTTATAGACTGGTAAAGCCTCTTCATAGGTGGCTCCTCCCATAATAA  847

seq1  ACA-CGATGATATCC-TGAGG  863
      ||| |||| |||||| |||||
seq2  ACACCGATAATATCCTTGAGG  868