BAC Information

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BAC

Clone NameB6Ng01-037M01
Chromosome3 (Build37)
Map Location 78,615,797 - 78,730,624
singlet/doubletdoublet
Overlap geneLOC383883, LOC100041748
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M01.bB6Ng01-037M01.g
ACCDH865520DH865521
length799658
definitionDH865520|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M01, 5' end.DH865521|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,615,797 - 78,616,601)(78,730,069 - 78,730,624)
sequence
gaattctccttgtctgttcccttggactccactttagggtttttagatgc
ttgacttgcagcacacttgtatattactatgggaaccagattcagcttga
aatataagataatatccaaccctgtatgcagaaacccttcctgggctgca
gcgaagccatgatcagcctgttacggccaggccattagaggtgattttca
gagttctctggatcaggggaagggaggttgcatggaagaaaaagtattcc
gcaccccagagtctcttgcttctgtgctgtgcttcatcattgatcctatg
tatttccatgttaatgtatttaagaaaaatgccattgcaatttagactca
agaaatttctgattcaattgcactctaaaaattaaaaatccagaccttct
ttaaagatctagaacaaaagaaagtcatcagaggtaggaacatatcagcc
cccaagattatctcaacctcaatgcctattaaacgctactaattaattct
aacaacctcattaagaatcattgatttcaacaatttcttcttaatactcg
tgaattccttggggattctagcatgtattgaagatatccagggtcattta
actgagggctgaaggaaatacgatcccttatttctttaagactactggat
gttcatttgctacagtgtttgaaatgacctgcttccctattaagagcagg
ctgtcaatggcagcaacagctacactgactaatggccatctggatgtggc
tagtcaggatataatggtgtgatcactgcaatttacaccaaggtttaaa
gaattcatacttggaaatggtatggaagcttgtttggcatgagttatgct
taattaaattatctaggtattattttaagggtaagagaatgatttgctca
gatgaaggcaaacatcttctgtgtttctctatagcacagaagtttttgtc
tctttgagaaaagttcttgctatgcagcctaggctggtgtttgttatctt
cctttgagggtagcattataggcactgtgcaggttaggcagttgtcagct
tgaaagaagctaaagtcatcttgaaagagagacactcagataaggagttg
cttccatcaccttagcctgtaggcaagtgtctgtgtgtgggtattttctt
aattcaataaattatttatgagggcccagcccactgtgggaggtaccact
cctggctgggtagtctcggttgttataagaaagcaagacaacacaccagt
agagaacaagccaataaacagtgttcctcacggtttgtttctgttcctgc
ctcgggtttctgctctgacttctctcagtgatgtcagtaaggtataacat
gaaataaaccgtttctttcctaagttggtttttggtcatggtgttggggg
ccctggcaccaatactaaaaacatgcaaattaataataaatgatcaactg
acaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78615797_78616601
seq2: B6Ng01-037M01.b_46_844

seq1  GAATTCTCCTTGTCTGTTCCCTTGGACTCCACTTTAGGGTTTTTAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGTCTGTTCCCTTGGACTCCACTTTAGGGTTTTTAGATGC  50

seq1  TTGACTTGCAGCACACTTGTATATTACTATGGGAACCAGATTCAGCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGCAGCACACTTGTATATTACTATGGGAACCAGATTCAGCTTGA  100

seq1  AATATAAGATAATATCCAACCCTGTATGCAGAAACCCTTCCTGGGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGATAATATCCAACCCTGTATGCAGAAACCCTTCCTGGGCTGCA  150

seq1  GCGAAGCCATGATCAGCCTGTTACGGCCAGGCCATTAGAGGTGATTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCCATGATCAGCCTGTTACGGCCAGGCCATTAGAGGTGATTTTCA  200

seq1  GAGTTCTCTGGATCAGGGGAAGGGAGGTTGCATGGAAGAAAAAGTATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCTGGATCAGGGGAAGGGAGGTTGCATGGAAGAAAAAGTATTCC  250

seq1  GCACCCCAGAGTCTCTTGCTTCTGTGCTGTGCTTCATCATTGATCCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAGAGTCTCTTGCTTCTGTGCTGTGCTTCATCATTGATCCTATG  300

seq1  TATTTCCATGTTAATGTATTTAAGAAAAATGCCATTGCAATTTAGACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATGTTAATGTATTTAAGAAAAATGCCATTGCAATTTAGACTCA  350

seq1  AGAAATTTCTGATTCAATTGCACTCTAAAAATTAAAAATCCAGACCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTCTGATTCAATTGCACTCTAAAAATTAAAAATCCAGACCTTCT  400

seq1  TTAAAGATCTAGAACAAAAGAAAGTCATCAGAGGTAGGAACATATCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCTAGAACAAAAGAAAGTCATCAGAGGTAGGAACATATCAGCC  450

seq1  CCCAAGATTATCTCAACCTCAATGCCTATTAAACGCTACTAATTAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATTATCTCAACCTCAATGCCTATTAAACGCTACTAATTAATTCT  500

seq1  AACAACCTCATTAAGAATCATTGATTTCAACAATTTCTTCTTAATACTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTCATTAAGAATCATTGATTTCAACAATTTCTTCTTAATACTCG  550

seq1  TGAATTCCTTGGGGATTCTAGCATGTATTGAAGATATCCAGGGTCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTTGGGGATTCTAGCATGTATTGAAGATATCCAGGGTCATTTA  600

seq1  ACTGAGGGCTGAAGGAAATACGATCCCTTATTTCTTTAAAGACTACTGGA  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTGAGGGCTGAAGGAAATACGATCCCTTATTTCTTT-AAGACTACTGGA  649

seq1  TGTTCATTTGCTACAGTGTTTGACATGACCTGCTTCCCCTATAAGAGCCA  700
      ||||||||||||||||||||||| ||||||||||||||   |||||| ||
seq2  TGTTCATTTGCTACAGTGTTTGAAATGACCTGCTTCCCTATTAAGAG-CA  698

seq1  GGCTGTTCAATGGCAAGCAACAGCTACACTGACTAATGGCCATCTGGATG  750
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCTG-TCAATGGC-AGCAACAGCTACACTGACTAATGGCCATCTGGATG  746

seq1  TGGCTAGTCAGGATATAAATGTGTGATCACTGCAAATTATACACCAGGGT  800
      ||||||||||||||||||  |||||||||||||||  | ||||||| |||
seq2  TGGCTAGTCAGGATATAATGGTGTGATCACTGCAA--TTTACACCAAGGT  794

seq1  TTAAA  805
      |||||
seq2  TTAAA  799

seq1: chr3_78730069_78730624
seq2: B6Ng01-037M01.g_167_725 (reverse)

seq1  ATCTTGTCAGTTGATCATTTATTATTAATTTGCATG-TTTTAGTATTGGT  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTTGTCAGTTGATCATTTATTATTAATTTGCATGTTTTTAGTATTGGT  50

seq1  GCCAGGG-CCCCAACACCATGACC-AAAACCAACTTAGGAAAGAAACGGT  97
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GCCAGGGCCCCCAACACCATGACCAAAAACCAACTTAGGAAAGAAACGGT  100

seq1  TTATTTCATGTTATACCTTACTGACATCACTGAGAGAAGTCAGAGCAGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATGTTATACCTTACTGACATCACTGAGAGAAGTCAGAGCAGAA  150

seq1  ACCCGAGGCAGGAACAGAAACAAACCGTGAGGAACACTGTTTATTGGCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGGCAGGAACAGAAACAAACCGTGAGGAACACTGTTTATTGGCTT  200

seq1  GTTCTCTACTGGTGTGTTGTCTTGCTTTCTTATAACAACCGAGACTACCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTACTGGTGTGTTGTCTTGCTTTCTTATAACAACCGAGACTACCC  250

seq1  AGCCAGGAGTGGTACCTCCCACAGTGGGCTGGGCCCTCATAAATAATTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGAGTGGTACCTCCCACAGTGGGCTGGGCCCTCATAAATAATTTA  300

seq1  TTGAATTAAGAAAATACCCACACACAGACACTTGCCTACAGGCTAAGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAAGAAAATACCCACACACAGACACTTGCCTACAGGCTAAGGTG  350

seq1  ATGGAAGCAACTCCTTATCTGAGTGTCTCTCTTTCAAGATGACTTTAGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCAACTCCTTATCTGAGTGTCTCTCTTTCAAGATGACTTTAGCT  400

seq1  TCTTTCAAGCTGACAACTGCCTAACCTGCACAGTGCCTATAATGCTACCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGCTGACAACTGCCTAACCTGCACAGTGCCTATAATGCTACCC  450

seq1  TCAAAGGAAGATAACAAACACCAGCCTAGGCTGCATAGCAAGAACTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAGATAACAAACACCAGCCTAGGCTGCATAGCAAGAACTTTTC  500

seq1  TCAAAGAGACAAAAACTTCTGTGCTATAGAGAAACACAGAAGATGTTTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGACAAAAACTTCTGTGCTATAGAGAAACACAGAAGATGTTTGC  550

seq1  CTTCATCTG  556
      |||||||||
seq2  CTTCATCTG  559