BAC Information

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BAC

Clone NameB6Ng01-037M15
Chromosome3 (Build37)
Map Location 20,070,012 - 20,189,430
singlet/doubletdoublet
Overlap geneCpa3, EG664965, LOC100040283, Cpb1
Upstream geneMtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
Downstream geneAgtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M15.bB6Ng01-037M15.g
ACCDH865545DH865546
length366465
definitionDH865545|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M15, 5' end.DH865546|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,189,106 - 20,189,430)(20,070,012 - 20,070,282)
sequence
gaattcatcaaataagacaatctttccccatttgtatgtaggaacttcaa
ttataactttatgaatggccatcggaattacttttatagcaaaaatataa
caaactcttcacgtaagtaggacactatctggaaaacaaaagtatttata
agaatgttgcgtggggaaatttaattactgttatactatctagccaataa
agaaacatcaacaattttcattacttcagtttgtcaagacatattttatg
ttgtttctatattcacaatttattatgagcaagggtggactgggaaatga
acactatacaaaagtcacacctgtgttctcactctttttctttttctttt
gtctgtttttcaagtc
taatttccgtgttgtcatatgaatgaaccaggaacttccaccaagctgaa
tcattacagtactgtgaagacccaattttaattacgttaatcaaaatttc
tcttattttttagaaaaacaccttgcaacggatatctcaaattctactga
aagtgctggagttttagaaacatctggaaagagaggcccattggacacgc
aaaatttatatgccccaatacaggggaacgccagggccaaaaagggggag
tgggtgggtaggggatgaagtctagtagacagaagggactgggctggtat
accaggtgtgcttcccattccaaaacaatgtaatgtgttggggtagatag
gcctgaatagaaagattggctatgatgtgggagagtcctgtagtttcatg
gagaggtggagagaatcctgacttaagtctctataggctttgtagtgagg
gcagggaaagccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_20189106_20189430
seq2: B6Ng01-037M15.b_74_397 (reverse)

seq1  GACTTGAAAAACAGACAAAAGAAAAAGAAAAAGAGTGAGAATTCAGGTGT  50
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  GACTTGAAAAACAGACAAAAGAAAAAGAAAAAGAGTGAGAACACAGGTGT  50

seq1  GACTTTTGTACAGTGTTTATTTCCCAGTTGACCCTTTCTCATAATAAATT  100
      |||||||||| |||||| ||||||||||  |||||| |||||||||||||
seq2  GACTTTTGTATAGTGTTCATTTCCCAGTCCACCCTTGCTCATAATAAATT  100

seq1  GTGAATATAGAAACAACATAAAATATGTCTTGACAAACTGAAGTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATAGAAACAACATAAAATATGTCTTGACAAACTGAAGTAATGAA  150

seq1  AATTGTTCTTGTTTCTTTATTGGCTAGATAGTATAACAGTAAATAAATTT  200
      |||||||  ||||||||||||||||||||||||||||||||| |||||||
seq2  AATTGTTGATGTTTCTTTATTGGCTAGATAGTATAACAGTAATTAAATTT  200

seq1  CCCCAGGTTACATTCTTATAAATACTTTTGTTTTCCAGATAGTGTCCTAC  250
      ||||| |  |||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGCAACATTCTTATAAATACTTTTGTTTTCCAGATAGTGTCCTAC  250

seq1  TTAAGTTGTTGAGTTTGTTATATTTTTTTTATAAAATTAATTCAGATGGC  300
      ||| | ||  |||||||||||||||||  ||||||| |||||| ||||||
seq2  TTACG-TGAAGAGTTTGTTATATTTTTGCTATAAAAGTAATTCCGATGGC  299

seq1  CTTTCATAAAATTATAATTGAAGTT  325
      | |||||||| ||||||||||||||
seq2  CATTCATAAAGTTATAATTGAAGTT  324

seq1: chr3_20070012_20070282
seq2: B6Ng01-037M15.g_69_339

seq1  GAATTCTAATTTCCATGTTGTCAAATGAATGAACCAGGAACTTCCACCAA  50
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GAATTCTAATTTCCGTGTTGTCATATGAATGAACCAGGAACTTCCACCAA  50

seq1  GCTGAATCATTACAGTACTGTGAAGACCCAATTTTAATTACGTTAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCATTACAGTACTGTGAAGACCCAATTTTAATTACGTTAATCAA  100

seq1  AATTTCTCTTATTTTTTAGAAAAACACCTTGCAACAGATATCTCAAATTC  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTTCTCTTATTTTTTAGAAAAACACCTTGCAACGGATATCTCAAATTC  150

seq1  TACTGAAAGTGCTGGAGTTTTAGAAACATCTGGAAAGAGAGGCCCATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGTGCTGGAGTTTTAGAAACATCTGGAAAGAGAGGCCCATTGG  200

seq1  ACACGCAAAATTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACGCAAAATTTATATGCCCCAATACAGGGGAACGCCAGGGCCAAAAAG  250

seq1  GGGGAGTGGGTGGGTAGGGGA  271
      |||||||||||||||||||||
seq2  GGGGAGTGGGTGGGTAGGGGA  271