BAC Information

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BAC

Clone NameB6Ng01-037N04
Chromosome3 (Build37)
Map Location 133,756,784 - 133,854,054
singlet/doubletdoublet
Overlap geneLOC100039168, LOC668862, LOC100039199
Upstream geneInts12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneCxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037N04.bB6Ng01-037N04.g
ACCDH865569DH865570
length1,0391,066
definitionDH865569|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N04, 5' end.DH865570|Mus musculus domesticus DNA, BAC clone: B6Ng01-037N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,756,784 - 133,757,431)(133,852,981 - 133,854,054)
sequence
gaattcattaattctattcaaacaacatgaaaattactatagcatatgag
catgtaatttattgtaaatatgacaggtcatatttattctgagaaaaaga
tataaaacaatagattttattatttttaaaaaatatgtattgattgataa
tgttttatgtgtatgtacctgcgtgtgtatacacatggaagtggcctcag
aggccaaaagaaagcattgaatatccctgtagtcagggttattattattt
tttattattgattcattgattgattgcaatccatattttattcactcccc
atctaccttttgactgttccacatcccatacttcctccccacacccatct
ccacgtgaatgtcatccccaccctataccccatctgacctctaaactctc
tggggcctccagtctcttgagggttaagtgcatcatctctgaatgaacac
agacccagaagtcctctactatatgtattttgggggcctcatgtcagcag
gagtatgctgtctgtttggtggtacagtgttgagagatctcaggggtcca
gattaattgagactgctgttccacctacaggttctccctcctcctcagct
tctttcagtctttccctaattcaaccataggggtcagcagcttctgtcca
ttgattggatacaaatatctgcatctgactctatcagctgcttgttgggt
ctttcaaagggtagtcaggatagctccctttttgtgtgtgctccatagcc
tcagtaatatagtgtcaggccttggaacctccccttgagctggatcccac
tttgggcctgttgctgggtgcctctccatttctatccctgtattctttca
aacaggaaaaattatgggtcagagatttgactgtgggatggcaaacccac
cccttacttgatgtcctgtctttctgctggagatggctctatgagttccc
tctcttactctcaggcatttcatctagagccttcctttagtcctgacagt
ttctcacctccaggtctctggtgcattctagagggtccc
gaattcttagaacttgtggtgttgtgttcacatgaaaacacccatgtttc
tgaagaatcatcaacacatacatttatcaactactcatttcaatcaaaat
ctgaaacaaattcaagattcatacatacctgtagttataccaaaactagc
acaaattattttatgctacttataaaaattattgggtaattctttttgct
aaacaaaattaaaattcacacatgttgataaagaacacatatgaaaaaat
ataagtattgcacttcttttgtcaaaaaaatagatatcctctactagttc
ttggctgaacaagaacatgtgcacacactatttaatatatacaggatata
atatatacaggataaatacatcatatattgtatacatactatatataata
tgtcactatgaatttttaaatatttttacagattctcctcttttgatgat
acatatgattatctagtatagacttaactaaaaactcttcctttggattt
tggctttaaatatagtcctgcttctttaaaatgaaaacaaccacaacaga
gagggggcgggggacaactaaggcactaaaactggtggacaatacttctt
caaaaataaatagatctgtcccctgttccaggatgactcaaacattcatt
atcactcaagtaactgccaagcaattgaaatccctctaattgcaagcacc
taaatgtagcttattgccttcccttcaatctcctgacttctctgggtcat
ttcattcgcacctctctttcaagccatctgggatctccagcactgcgagc
tgtaatgccgaacacctggcctgatagtgtgtgctgctctctttcacctg
ccagccctttgttcctgcccaagattgaatgagcactacaagtcctgtca
agcacgcacacactgcggctttcctgcacccgactcgcgctagtccttaa
gtctactaaatcctttcattttcgcctcgccatctagcgggcttcatcta
ctttgtgtcttctagagctaaaatccacaggaaagttaccacacgtgata
cttctagaacaccgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133756784_133757431
seq2: B6Ng01-037N04.b_49_696

seq1  GAATTCATTAATTCTATTCAAACAACATGAAAATTACTATAGCATATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTCTATTCAAACAACATGAAAATTACTATAGCATATGAG  50

seq1  CATGTAATTTATTGTAAATATGACAGGTCATATTTATTCTGAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATTTATTGTAAATATGACAGGTCATATTTATTCTGAGAAAAAGA  100

seq1  TATAAAACAATAGATTTTATTATTTTTAAAAAATATGTATTGATTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACAATAGATTTTATTATTTTTAAAAAATATGTATTGATTGATAA  150

seq1  TGTTTTATGTGTATGTACCTGCGTGTGTATACACATGGAAGTGGCCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTGTATGTACCTGCGTGTGTATACACATGGAAGTGGCCTCAG  200

seq1  AGGCCAAAAGAAAGCATTGAATATCCCTGTAGTCAGGGTTATTATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAGAAAGCATTGAATATCCCTGTAGTCAGGGTTATTATTATTT  250

seq1  TTTATTATTGATTCATTGATTGATTGCAATCCATATTTTATTCACTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTGATTCATTGATTGATTGCAATCCATATTTTATTCACTCCCC  300

seq1  ATCTACCTTTTGACTGTTCCACATCCCATACTTCCTCCCCACACCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTTTTGACTGTTCCACATCCCATACTTCCTCCCCACACCCATCT  350

seq1  CCACGTGAATGTCATCCCCACCCTATACCCCATCTGACCTCTAAACTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGAATGTCATCCCCACCCTATACCCCATCTGACCTCTAAACTCTC  400

seq1  TGGGGCCTCCAGTCTCTTGAGGGTTAAGTGCATCATCTCTGAATGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCCAGTCTCTTGAGGGTTAAGTGCATCATCTCTGAATGAACAC  450

seq1  AGACCCAGAAGTCCTCTACTATATGTATTTTGGGGGCCTCATGTCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAGTCCTCTACTATATGTATTTTGGGGGCCTCATGTCAGCAG  500

seq1  GAGTATGCTGTCTGTTTGGTGGTACAGTGTTGAGAGATCTCAGGGGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGCTGTCTGTTTGGTGGTACAGTGTTGAGAGATCTCAGGGGTCCA  550

seq1  GATTAATTGAGACTGCTGTTCCACCTACAGGTTCTCCCTCCTCCTCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTGAGACTGCTGTTCCACCTACAGGTTCTCCCTCCTCCTCAGCT  600

seq1  TCTTTCAGTCTTTCCCTAATTCAACCATAGGGGTCAGCAGCTTCTGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTCTTTCCCTAATTCAACCATAGGGGTCAGCAGCTTCTGTC  648

seq1: chr3_133852981_133854054
seq2: B6Ng01-037N04.g_68_1133 (reverse)

seq1  TCCGGTGTTCTAGAAGTATCACGTGTGGTTAACTCTCCTGTGGATTTTTA  50
      |||||||||||||||||||||||||||| ||||| ||||||||| |||||
seq2  TCCGGTGTTCTAGAAGTATCACGTGTGG-TAACTTTCCTGTGGA-TTTTA  48

seq1  GCTTCTAGAGATCACAAAGTAGATGGAGCCCGCTAGATGGGCGAGGCGAA  100
      || ||||||   ||||||||||||| |||||||||||| |||||||||||
seq2  GC-TCTAGAAGACACAAAGTAGATGAAGCCCGCTAGAT-GGCGAGGCGAA  96

seq1  ATAATGAAAGGATTTAGTAGACTTAAGGACTAGCGCGAGTCCGGGTGCAG  150
        |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  --AATGAAAGGATTTAGTAGACTTAAGGACTAGCGCGAGT-CGGGTGCAG  143

seq1  GAAAAGCCGCAGTGTGTGCGTGCTTGACAGGACTTGTAGTGCTCATTCAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAGCCGCAGTGTGTGCGTGCTTGACAGGACTTGTAGTGCTCATTCAA  192

seq1  TCTTGGGCAGGAACAAAGGGCTGGCAGGTGAAAGAGAGCAGCACACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGCAGGAACAAAGGGCTGGCAGGTGAAAGAGAGCAGCACACACTA  242

seq1  TCAGGCCAGGTGTTCGGCATTACAGCTCGCAGTGCTGGAGATCCCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGGTGTTCGGCATTACAGCTCGCAGTGCTGGAGATCCCAGATG  292

seq1  GCTTGAAAGAGAGGTGCGAATGAAATGACCCAGAGAAGTCAGGAGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAGAGAGGTGCGAATGAAATGACCCAGAGAAGTCAGGAGATTGA  342

seq1  AGGGAAGGCAATAAGCTACATTTAGGTGCTTGCAATTAGAGGGATTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGCAATAAGCTACATTTAGGTGCTTGCAATTAGAGGGATTTCAA  392

seq1  TTGCTTGGCAGTTACTTGAGTGATAATGAATGTTTGAGTCATCCTGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGCAGTTACTTGAGTGATAATGAATGTTTGAGTCATCCTGGAAC  442

seq1  AGGGGACAGATCTATTTATTTTTGAAGAAGTATTGTCCACCAGTTTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGATCTATTTATTTTTGAAGAAGTATTGTCCACCAGTTTTAGT  492

seq1  GCCTTAGTTGTCCCCCGCCCCCTCTCTGTTGTGGTTGTTTTCATTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTTGTCCCCCGCCCCCTCTCTGTTGTGGTTGTTTTCATTTTAAA  542

seq1  GAAGCAGGACTATATTTAAAGCCAAAATCCAAAGGAAGAGTTTTTAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGACTATATTTAAAGCCAAAATCCAAAGGAAGAGTTTTTAGTTA  592

seq1  AGTCTATACTAGATAATCATATGTATCATCAAAAGAGGAGAATCTGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATACTAGATAATCATATGTATCATCAAAAGAGGAGAATCTGTAAA  642

seq1  AATATTTAAAAATTCATAGTGACATATTATATATAGTATGTATACAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAAATTCATAGTGACATATTATATATAGTATGTATACAATAT  692

seq1  ATGATGTATTTATCCTGTATATATTATATCCTGTATATATTAAATAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTATTTATCCTGTATATATTATATCCTGTATATATTAAATAGTGT  742

seq1  GTGCACATGTTCTTGTTCAGCCAAGAACTAGTAGAGGATATCTATTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATGTTCTTGTTCAGCCAAGAACTAGTAGAGGATATCTATTTTTT  792

seq1  TGACAAAAGAAGTGCAATACTTATATTTTTTCATATGTGTTCTTTATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGAAGTGCAATACTTATATTTTTTCATATGTGTTCTTTATCAA  842

seq1  CATGTGTGAATTTTAATTTTGTTTAGCAAAAAGAATTACCCAATAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGAATTTTAATTTTGTTTAGCAAAAAGAATTACCCAATAATTTT  892

seq1  TATAAGTAGCATAAAATAATTTGTGCTAGTTTTGGTATAACTACAGGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAGCATAAAATAATTTGTGCTAGTTTTGGTATAACTACAGGTAT  942

seq1  GTATGAATCTTGAATTTGTTTCAGATTTTGATTGAAATGAGTAGTTGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATCTTGAATTTGTTTCAGATTTTGATTGAAATGAGTAGTTGATA  992

seq1  AATGTATGTGTTGATGATTCTTCAGAAACATGGGTGTTTTCATGTGAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTGTTGATGATTCTTCAGAAACATGGGTGTTTTCATGTGAACA  1042

seq1  CAACACCACAAGTTCTAAGAATTC  1074
      ||||||||||||||||||||||||
seq2  CAACACCACAAGTTCTAAGAATTC  1066