BAC Information

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BAC

Clone NameB6Ng01-038B22
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,196 - 41,059,737103,760,800 - 103,761,932
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038B22.bB6Ng01-038B22.g
ACCDH865784DH865785
length9921,113
definitionDH865784|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B22, 5' end.DH865785|Mus musculus domesticus DNA, BAC clone: B6Ng01-038B22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,196 - 41,059,737)(103,760,800 - 103,761,932)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgattgaggataggtaaagatactttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttccactgtacctatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtgcagttccttaa
tccacttagatttgaccttagtacaacgagataggaatggatcaattcac
attcttctacatgataaccaccagttgtgccagcatcattgttgaaaatg
ctgtcttttttccactggatggttttagcttccttgtcaaagatcaagtc
cataggtgtgtgggttcatttctgggtcttcaattctattccattggtct
acgtgtctgtcgctataccagttccatgcagcttttatcacaattgctct
gtagtacagctttaggtcaggcaaggtgattccaccagaggttcttttat
cattaagaagagtttttgctatcctacgttttttgttattccagatgagt
ttacagattgccctttctaattcgttgaagaattgagttggaattttgat
ggggattgcattgaatctgtagattgcttttggcaagatagccattttta
ctatattgatcctgccaatccatgagcatgggagatctttccatcttctg
agatcttctttaatttctttcttcagagacttgaagttcttatcatacag
atctttcacttccttaattagagtcatacgaaggtattttaaattatttg
tgactattgagaaggtgttgtttccctaatttctttctcagc
gaattctcagtcattcagacatcttcattggacgtcaagcatttcttatt
tttgagctattaagactgctgtctctcaaatccatagcatctagttacct
tttccttaattgttcacatacatatacacatacatacagacacaattaca
cacacccagagacagatttacacacataggcacttaaacagatacacaca
cacacagacatacagatatacatatatagacacttaaacagatacacaca
cagacataaacacagacacacattcacacagatacaaacacataaacata
cacagaaataaacagattcacacatacagacacacacagagactcacaca
aagacacacaccacacatatgtattccttaatatataatgcttaatataa
cacataaatataatttttctcagtctgtgtaatgttacttgaacgtaaac
cttgtatttctagtgtttggctttagtttttttttttagtttaaaattta
gaaaacccactcattgaataaatcactcatcccagatgttcacaaatagc
aaactgagtactaataatcaacctccatgcaagtgcagacttcataatta
gaagcataaacagtatatcagtgtaaaaaattgatggaagacacactttt
agtccattgaaaaacgatatttaagggagctgaagtagcacactcttgtt
gagatgctggcatttggtgttttccttagaaagggactgtttgaaacagg
aactctctaacttgggatgtgcattaatttaaagactagacaagctgaaa
taatgttagaatttgatatatggcctactcagtctcctgcactataactc
agtttgggatacataatatgcttattaggagaattggtttatttctgaca
aatggcgggcgctgccctgacatttcctcaagaaccacacagactttcta
aaccctaatgaacaaatgtctgtcattttcgccaagctagttctgatact
tttgcttttacatatccattgcagtttgtcctatactgttgccttgactc
ccatagagaggtgctcaagaaatactgactcttcttttataaaaacaaaa
acaaacgtagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059196_41059737
seq2: B6Ng01-038B22.b_44_583 (reverse)

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  50
      |||||||||||||||| |||||| ||| ||||||||||||||  ||||||
seq2  GAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGG--ACTTGA  48

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  100
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAAGGAAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  98

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  150
      ||| |||| |||||||||||||||| ||||||||||||||||||| ||||
seq2  AAC-AATGATGCTGGCACAACTGGTGGTTATCATGTAGAAGAATGTGAAT  147

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  200
      ||||||| ||||||||| ||||||||||||||||||||||||||| ||||
seq2  TGATCCATTCCTATCTCGTTGTACTAAGGTCAAATCTAAGTGGATTAAGG  197

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  250
      |||  ||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACTGCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGG  247

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  300
      ||||||||||||||||| |  |||| ||||||||||||| ||||||||||
seq2  AAAAGCCTTGAAGATATAGGTACAGTGGAAAAATTCCTGAATAGAACAGC  297

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  350
      |||||||||||||||||||| |||||| ||||||||||||||||| ||| 
seq2  AATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTCATAAAAT  347

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  399
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCA  397

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  449
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CCAACAGATTGGGAAAGTATCTTTACCTATCCTCAATCAGATAGGGGACT  447

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  499
      ||||||||| |||||| ||||||||||||||||||| | |||||||||||
seq2  AATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAA  497

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  542
      |||||||||||||||||||||||||||| || |||||||||||
seq2  ATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATT  540

seq1: chr5_103760800_103761932
seq2: B6Ng01-038B22.g_67_1179 (reverse)

seq1  CTGCTACGTTTTGTTTTTGTTTTTTAATAAAGATGAGTCCAGGTAATCTC  50
      |||||||| |||||||||| ||||||  ||||| |||||   ||| |   
seq2  CTGCTACG-TTTGTTTTTG-TTTTTATAAAAGAAGAGTC--AGTATTTCT  46

seq1  TGAGCACCTCTCTAATGTGAAGTCAAGGCAACAGTTATAGGACAAAAACT  100
      ||||||||||||| ||| | |||||||||||||| ||||||||  |||||
seq2  TGAGCACCTCTCT-ATG-GGAGTCAAGGCAACAG-TATAGGAC--AAACT  91

seq1  GCAAATGGAATATGTAAAAAGCAAAAGTAATTCAAGAACTTAGCCTTTGG  150
      || ||||| |||||| |||||||||||||  || ||||| ||||  ||||
seq2  GC-AATGG-ATATGT-AAAAGCAAAAGTA--TC-AGAAC-TAGC--TTGG  132

seq1  CGAAAATGACAGACATTTGTTCATTAGGGTTTAGAAAGTCTGTTGTGGTT  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGAAAATGACAGACATTTGTTCATTAGGGTTTAGAAAGTCTG-TGTGGTT  181

seq1  CTTGAGGAAATGTCAGGGCAGCGCCCCGCCATTTGTCAGAAATAAACCAA  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGAGGAAATGTCAGGGCAGCG-CCCGCCATTTGTCAGAAATAAACCAA  230

seq1  TTCTCCTAATAAGCATATTATGTATCCCAAACTGAGTTATAGTGCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAATAAGCATATTATGTATCCCAAACTGAGTTATAGTGCAGGAG  280

seq1  ACTGAGTAGGCCATATATCAAATTCTAACATTATTTCAGCTTGTCTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTAGGCCATATATCAAATTCTAACATTATTTCAGCTTGTCTAGTC  330

seq1  TTTAAATTAATGCACATCCCAAGTTAGAGAGTTCCTGTTTCAAACAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAATGCACATCCCAAGTTAGAGAGTTCCTGTTTCAAACAGTCC  380

seq1  CTTTCTAAGGAAAACACCAAATGCCAGCATCTCAACAAGAGTGTGCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAGGAAAACACCAAATGCCAGCATCTCAACAAGAGTGTGCTACT  430

seq1  TCAGCTCCCTTAAATATCGTTTTTCAATGGACTAAAAGTGTGTCTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCCTTAAATATCGTTTTTCAATGGACTAAAAGTGTGTCTTCCAT  480

seq1  CAATTTTTTACACTGATATACTGTTTATGCTTCTAATTATGAAGTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTACACTGATATACTGTTTATGCTTCTAATTATGAAGTCTGCA  530

seq1  CTTGCATGGAGGTTGATTATTAGTACTCAGTTTGCTATTTGTGAACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGAGGTTGATTATTAGTACTCAGTTTGCTATTTGTGAACATCT  580

seq1  GGGATGAGTGATTTATTCAATGAGTGGGTTTTCTAAATTTTAAACTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGTGATTTATTCAATGAGTGGGTTTTCTAAATTTTAAACTAAAA  630

seq1  AAAAAAACTAAAGCCAAACACTAGAAATACAAGGTTTACGTTCAAGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTAAAGCCAAACACTAGAAATACAAGGTTTACGTTCAAGTAAC  680

seq1  ATTACACAGACTGAGAAAAATTATATTTATGTGTTATATTAAGCATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACAGACTGAGAAAAATTATATTTATGTGTTATATTAAGCATTATA  730

seq1  TATTAAGGAATACATATGTGTGGTGTGTGTCTTTGTGTGAGTCTCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGGAATACATATGTGTGGTGTGTGTCTTTGTGTGAGTCTCTGTGT  780

seq1  GTGTCTGTATGTGTGAATCTGTTTATTTCTGTGTATGTTTATGTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTATGTGTGAATCTGTTTATTTCTGTGTATGTTTATGTGTTTGT  830

seq1  ATCTGTGTGAATGTGTGTCTGTGTTTATGTCTGTGTGTGTATCTGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGAATGTGTGTCTGTGTTTATGTCTGTGTGTGTATCTGTTTAA  880

seq1  GTGTCTATATATGTATATCTGTATGTCTGTGTGTGTGTGTATCTGTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATATATGTATATCTGTATGTCTGTGTGTGTGTGTATCTGTTTAA  930

seq1  GTGCCTATGTGTGTAAATCTGTCTCTGGGTGTGTGTAATTGTGTCTGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTATGTGTGTAAATCTGTCTCTGGGTGTGTGTAATTGTGTCTGTAT  980

seq1  GTATGTGTATATGTATGTGAACAATTAAGGAAAAGGTAACTAGATGCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTATATGTATGTGAACAATTAAGGAAAAGGTAACTAGATGCTAT  1030

seq1  GGATTTGAGAGACAGCAGTCTTAATAGCTCAAAAATAAGAAATGCTTGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAGAGACAGCAGTCTTAATAGCTCAAAAATAAGAAATGCTTGAC  1080

seq1  GTCCAATGAAGATGTCTGAATGACTGAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  GTCCAATGAAGATGTCTGAATGACTGAGAATTC  1113