BAC Information

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BAC

Clone NameB6Ng01-038F16
Chromosome3 (Build37)
Map Location 25,234,151 - 25,234,743
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, LOC100039592
Downstream geneNlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F16.bB6Ng01-038F16.g
ACCDH865939DH865940
length1,253834
definitionDH865939|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F16, 5' end.DH865940|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctaaatccatcaggcattggggatttttcggttgggagag
tattaaagactgcttctatttcctaggggatatggcactgtttaaatggt
gtatctgatcctgatttaactttggtgcctgggatctgcctagaaaataa
tttgtctcatctagatttcccagttttattgaatgtatgcttttgtagta
ggatctgataattttttaaaaattttttccatttctgtttttatgtcttt
cttttcattttttttttctgatccatgtgtgtctaatgtctgctctctca
tcatgatctcatggaaaattttcctggtctacccacatggtctctttacc
tggtagatcagaagtacagccttcctatcactcctaccctgtcataggct
aaatcggctctttattgaccaatcagagatgatgcaaaacaatttttata
taagttggtgagaagagatgcttgacagtgtcattttataggctgcaggc
atatgtcagggcatagaaatcagcatctgaatatacagtacacaagacta
acctccaacatccctttctccaacataaataaactatatacaataagaac
aattatgggcaccatcaggtaagaattacattactaatagccagtcaatt
agtatttggcaaagttgaataaagtacttcaatatctattccatctaggt
gagtttagagttttggacttatcataactagaatttataaactcatgaat
acctttttagaccttaaaccaatttcttaaatcctaatcaattcaatgtt
aattctgagactataactatttcatcttgaaacccaacaaagaccaaaga
ataaatattacctaagtatgcaagaagtacagacaagcagcttccaaaac
tgtagaaaagacagagaaatctggttgtctagacagctacccattttttt
ttctgagttattggagcatcatctcagcttctggcacaaaatatctgacg
actttctgtgaaacaggaaacatgagattgtttatctgtctgcaagcata
gcgttgattctgacatctctctgccagttgacagcattaaacagtattga
gcagaaagttactggccaatggatgctgccattgagcaactcatagaatt
tctccaattctcgtttaatgaggggggagtctgccgaacgactgttctat
gtaacggggatgataaacctttatagacaattgtgaatcgtagctctcag
gac
gaattctgtttgatgaggggggagaagggagagctgaatggggcagattg
gagggccaatgatggaaaaaaatctctacctcattgtctgtatttctgtg
tcactgtagacacattgatatcaaccacagcgatttcaaagtccatattt
ttccaatagactgaaaacatggacaaaaataagcagagatatatcaaaat
taaatgttatcattgatgaaattgacttaagagatatctacaaaatattc
aacccaaatgaagaatatatattctggtgagcagtgcctggaagctttcc
tagaataaggcacaccctgggatacaaagtaaatctttacaatttgtaca
aatttaaagaaccccatgtactctatctaatcataattcagtaaaactca
aagtcaacaacaacaacaaaactctaataaataaacaaacatatggagag
agagcaactcaatgctaaatgatgaatgagtcaaagaagaaatcaatata
tctaaatgttcatggaactaaagtaataaaaacataggaataccataggg
acacattaaaaacagtctcatgtggaaatgttaaaatctaaggacttata
ttttgaaacatcaagcacacaaataaatgagttaatgatattttgcaaga
atttggaaaaacaaaagcaaagtgacccaatttcactagatacaaataat
aaatgtaaaagcagtgctcatgaaatgaaagtaaaagaaaacattatgag
aatcacaatctaagaacttgttcttcagatgataaacatgattgacagac
cactagcccactaataagaaagagggccaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25234151_25234743
seq2: B6Ng01-038F16.g_68_660 (reverse)

seq1  CCTTAGATTTTAACATTTCCACATGAGACTGTTTTTAATGTGTCCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATTTTAACATTTCCACATGAGACTGTTTTTAATGTGTCCCTATG  50

seq1  GTATTCCTATGTTTTTATTACTTTAGTTCCATGAACATTTAGATATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTATGTTTTTATTACTTTAGTTCCATGAACATTTAGATATATTG  100

seq1  ATTTCTTCTTTGACTCATTCATCATTTAGCATTGAGTTGCTCTCTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTTTGACTCATTCATCATTTAGCATTGAGTTGCTCTCTCTCCA  150

seq1  TATGTTTGTTTATTTATTAGAGTTTTGTTGTTGTTGTTGACTTTGAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTTTATTTATTAGAGTTTTGTTGTTGTTGTTGACTTTGAGTTT  200

seq1  TACTGAATTATGATTAGATAGAGTACATGGGGTTCTTTAAATTTGTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTATGATTAGATAGAGTACATGGGGTTCTTTAAATTTGTACAA  250

seq1  ATTGTAAAGATTTACTTTGTATCCCAGGGTGTGCCTTATTCTAGGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGATTTACTTTGTATCCCAGGGTGTGCCTTATTCTAGGAAAGC  300

seq1  TTCCAGGCACTGCTCACCAGAATATATATTCTTCATTTGGGTTGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCACTGCTCACCAGAATATATATTCTTCATTTGGGTTGAATATT  350

seq1  TTGTAGATATCTCTTAAGTCAATTTCATCAATGATAACATTTAATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATATCTCTTAAGTCAATTTCATCAATGATAACATTTAATTTTGA  400

seq1  TATATCTCTGCTTATTTTTGTCCATGTTTTCAGTCTATTGGAAAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTGCTTATTTTTGTCCATGTTTTCAGTCTATTGGAAAAATATG  450

seq1  GACTTTGAAATCGCTGTGGTTGATATCAATGTGTCTACAGTGACACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAATCGCTGTGGTTGATATCAATGTGTCTACAGTGACACAGAA  500

seq1  ATACAGACAATGAGGTAGAGATTTTTTTCCATCATTGGCCCTCCAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACAATGAGGTAGAGATTTTTTTCCATCATTGGCCCTCCAATCTG  550

seq1  CCCCATTCAGCTCTCCCTTCTCCCCCCTCATCAAACAGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCAGCTCTCCCTTCTCCCCCCTCATCAAACAGAATTC  593