BAC Information

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BAC

Clone NameB6Ng01-038M05
Chromosome3 (Build37)
Map Location 37,420,437 - 37,593,514
singlet/doubletdoublet
Overlap geneSpata5, LOC665778, Spry1
Upstream geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M05.bB6Ng01-038M05.g
ACCDH866225DH866226
length2551,091
definitionDH866225|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M05, 5' end.DH866226|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,593,260 - 37,593,514)(37,420,437 - 37,421,545)
sequence
tgcactaaaacatcgtcaaatgcttgtctgaaagcctcaaaataatccaa
ctcatggactgaagaagaaataccaagggtaatcagtagtagacttagag
ctaaagactgaaggagaaaaacagaacttttagaccagaagcaactgaga
taaagtgtgggtaccaaaatgtatgtgtgttaagtgttgatggtttcaat
agatgaagaggaggcaagactctaagtacagtgtgtgtgtgtggtggggg
ggagt
gaattctttatgtacaagtcatagaaaaagtattcgttttataaagaaca
tgttcacttaggtgatcatataatgtttgctatggaggatggcatgtaga
cccttagaaatgggtgacttcaccgagtactcatcactctggatatatct
actctcatatcccagaacaatccttaaaaaaagaatttaggtgtgttaat
tcattcagagctctgcaggaaggaaggctctttcctgctcttttaaagca
tgactttgactgacaagatcagaccagaaaaggcctctctggctacagac
ctagatgatttaacgtcactcagcctgcactgtcctagagagctttagct
gaacagagcacgggtgtatgttggtcaatccagcacgtaagcaatggttt
tttttttgttttgtttttgtttttttatacaaaagaggatacatttattg
aaatttactcagccttaaaattatgggaattctgacatatactactacat
agctgaaccttaaatacatgctaaatgacataacacagtcacaaaaatta
cacatattccaccattccacatatgtgaattatctaaagtaataaaaact
gcaaagaccaaaagtacctggggcaggttattgacattttcatttactgt
catttatagtcttcagatgacctgcacaacaatgtgaatgcattttgtaa
tgaaaaattatgatccagatgtttacaatatgtttgtttaatcacaacta
aagaaaatctacaatatgtagaagttttttaggtaatagtataatatcca
ctttggggcttcaattatcaacaaatgttataaaagtggtctgtttctcc
agggagactcccaagcagtagatggccaacactaaaagaactcaaggaca
tccattgaggttctttgtctcatatgtaattcaaagcattattattataa
tataatatattatctttttcccatttttataggtattagctcatttacat
ttccatgctataccaaagtccccatacccccccccactcccttaccacca
ctccacttcttggccttgcgtttccttgtactggggcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37593260_37593514
seq2: B6Ng01-038M05.b_54_308 (reverse)

seq1  ACTCCCCCCCACCACACACACACACTGTACTTAGAGTCTTGCCTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCCCACCACACACACACACTGTACTTAGAGTCTTGCCTCCTCTT  50

seq1  CATCTATTGAAACCATCAACACTTAACACACATACATTTTGGTACCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTGAAACCATCAACACTTAACACACATACATTTTGGTACCCACA  100

seq1  CTTTATCTCAGTTGCTTCTGGTCTAAAAGTTCTGTTTTTCTCCTTCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCAGTTGCTTCTGGTCTAAAAGTTCTGTTTTTCTCCTTCAGTC  150

seq1  TTTAGCTCTAAGTCTACTACTGATTACCCTTGGTATTTCTTCTTCAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCTAAGTCTACTACTGATTACCCTTGGTATTTCTTCTTCAGTCC  200

seq1  ATGAGTTGGATTATTTTGAGGCTTTCAGACAAGCATTTGACGATGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGGATTATTTTGAGGCTTTCAGACAAGCATTTGACGATGTTTTA  250

seq1  GTGCA  255
      |||||
seq2  GTGCA  255

seq1: chr3_37420437_37421545
seq2: B6Ng01-038M05.g_68_1158

seq1  GAATTCTTTATGTACAAGTCATAGAAAAAGTATTCGTTTTATAAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTACAAGTCATAGAAAAAGTATTCGTTTTATAAAGAACA  50

seq1  TGTTCACTTAGGTGATCATATAATGTTTGCTATGGAGGATGGCATGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTAGGTGATCATATAATGTTTGCTATGGAGGATGGCATGTAGA  100

seq1  CCCTTAGAAATGGGTGACTTCACCGAGTACTCATCACTCTGGATATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGAAATGGGTGACTTCACCGAGTACTCATCACTCTGGATATATCT  150

seq1  ACTCTCATATCCCAGAACAATCCTTAAAAAAAGAATTTAGGTGTGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATATCCCAGAACAATCCTTAAAAAAAGAATTTAGGTGTGTTAAT  200

seq1  TCATTCAGAGCTCTGCAGGAAGGAAGGCTCTTTCCTGCTCTTTTAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGAGCTCTGCAGGAAGGAAGGCTCTTTCCTGCTCTTTTAAAGCA  250

seq1  TGACTTTGACTGACAAGATCAGACCAGAAAAGGCCTCTCTGGCTACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGACTGACAAGATCAGACCAGAAAAGGCCTCTCTGGCTACAGAC  300

seq1  CTAGATGATTTAACGTCACTCAGCCTGCACTGTCCTAGAGAGCTTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGATTTAACGTCACTCAGCCTGCACTGTCCTAGAGAGCTTTAGCT  350

seq1  GAACAGAGCACGGGTGTATGTTGGTCAATCCAGCACGTAAGCAATGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCACGGGTGTATGTTGGTCAATCCAGCACGTAAGCAATGGTTT  400

seq1  TTTTTTTGTTTTGTTTTTGTTTTTTTATACAAAAGAGGATACATTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTGTTTTTGTTTTTTTATACAAAAGAGGATACATTTATTG  450

seq1  AAATTTACTCAGCCTTAAAATTATGGGAATTCTGACATATACTACTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTCAGCCTTAAAATTATGGGAATTCTGACATATACTACTACAT  500

seq1  AGCTGAACCTTAAATACATGCTAAATGACATAACACAGTCACAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACCTTAAATACATGCTAAATGACATAACACAGTCACAAAAATTA  550

seq1  CACATATTCCACCATTCCACATATGTGAATTATCTAAAGTAATAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTCCACCATTCCACATATGTGAATTATCTAAAGTAATAAAAACT  600

seq1  GCAAAGACCAAAAGTACCTGGGGCAGGTTATTGACATTTTCATTTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACCAAAAGTACCTGGGGCAGGTTATTGACATTTTCATTTACTGT  650

seq1  CATTTATAGTCTTCAGATGACCTGCACAACAATGTGAATGCATTTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAGTCTTCAGATGACCTGCACAACAATGTGAATGCATTTTGTAA  700

seq1  TGAAAAATTATGATCCAGATGTTTACAATATGTTTGTTTAATCACAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTATGATCCAGATGTTTACAATATGTTTGTTTAATCACAACTA  750

seq1  AAGAAAATCTACAATATGTAGAAGTTTTTTAGGTAATAGTATAATATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCTACAATATGTAGAAGTTTTTTAGGTAATAGTATAATATCCA  800

seq1  CTTTGGGGCTTCAATTATCAACAAATGTTATAAAAGTGGTCTGTTTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGCTTCAATTATCAACAAATGTTATAAAAGTGGTCTGTTTCTCC  850

seq1  AGGGAGACTCCCAAGCAGTAGATGGCCAACACTAAAAGAACTCAAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTCCCAAGCAGTAGATGGCCAACACTAAAAGAACTCAAGGACA  900

seq1  TCCATTGAGGTTCTTTGTCTCATAATGTTAATTCAAAGCATTATTATTAT  950
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TCCATTGAGGTTCTTTGTCTCAT-ATG-TAATTCAAAGCATTATTATTAT  948

seq1  TA-ATAATAATTATTATTATCTTTTTTCCCATTTTTTTATTAGGTATTTA  999
       | ||||||     ||||||| ||||||||||||||    |||||| |||
seq2  AATATAATA-----TATTATC-TTTTTCCCATTTTT---ATAGGTA-TTA  988

seq1  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCCCCCCC  1049
      |||||||||||||||| |||||||||| ||||| ||||||||||||||||
seq2  GCTCATTTACATTTCC-ATGCTATACC-AAAGT-CCCCATACCCCCCCCC  1035

seq1  ACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTAC  1099
      |||||| ||||   ||||| ||||||||||| ||| ||||| || |||||
seq2  ACTCCCTTACC--ACCACT-CCACTTCTTGG-CCTTGCGTTTCCTTGTAC  1081

seq1  TGGGGCATAT  1109
      ||||||||||
seq2  TGGGGCATAT  1091