BAC Information

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BAC

Clone NameB6Ng01-039C24
Chromosome3 (Build37)
Map Location 145,315,000 - 145,462,634
singlet/doubletdoublet
Overlap geneDdah1
Upstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneLOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039C24.bB6Ng01-039C24.g
ACCDH866528DH866529
length1,175115
definitionDH866528|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C24, 5' end.DH866529|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,461,422 - 145,462,634)(145,315,000 - 145,315,114)
sequence
gaattcagaattctgaggtcagctttagagcaggctggacagcctgcaag
aatgcaaagtcctgggatcgactctagagcagactgggcagctggtgaga
ctacagaaccccggagtcagctctagagcaggctgggcagctggtgagaa
tacagaactcctgggtcagctctggagtaggctggacagctgctgttttc
taatcgagttcttatagagttttcagtagggggtataagtctgcatggaa
cttcatggaagatcacactggaatttaatttttaattatacaatctctgt
ggatgaaacccagcagctatgaaacaatgaaattactaagctgaagggga
ataagtgtaaaatattccaatctgagaccaagctgattttttttaaaggg
tcgtctcagagacgttcctcgtctttttatttatttacttatttattttg
gcagtgctggtgattgaacgtagtgaaggccaagactatacagctgagat
ctaaccctagccttccagtctgtcttagagatgttaagtattagacactt
taacacagcacattccattctgctaatgattacaaatgattcttgctctg
gggccaggcaggaggaaatggaggcagatgataagcgttcaaagagtttg
agcagggatggacatggtgacgaaatctgtggtgctcctggcaaacattc
caatgagaggcacaaacacgggcttcgtctctttgaacctcatttgttag
gaagctgctgttgctgctgtggacagataagatccaagaccaaacaagga
tgcgtaggcttgctacagcacaaggcttatctcagcagctggctctcctc
tatttaaaaaatcggcccaagaaaagcattttccctgacaattcatgctc
tcctggcactgcacccaaaggggaaagcatacaaggttcatgtttcttct
ctccattagatagacccagagaacccctgtaaagtagaaaattactaaat
tctttaaaatacaattttctttttatttgtctccatacataatttgacaa
tctggggtttattataaaacgaagtaaatgacattactagtccggatggc
catttacagcttaagctcttgtgccatatttacgaacaatgctaaaggag
gcctcagccggggcttatatccatt
cttgtttttcacgcaatctgtctatcatgatttaaaataaagttgcagtg
gatgatccaactggcctgaatatgctgtgttcctttgctgaggggagttg
gagggtgaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145461422_145462634
seq2: B6Ng01-039C24.b_30_1205 (reverse)

seq1  AATGAGATATTAAGCCCCCACAGACTGTGAGGCCTCCTCTTAGCATTTGG  50
      |||| |||| ||||||||  |      ||||||||||| ||||||||  |
seq2  AATG-GATA-TAAGCCCCGGC------TGAGGCCTCCT-TTAGCATT--G  39

seq1  TTCGTAAATTATGGCCCACCAGAGCTTTAAGCTGTAAAATTGCCCCATCC  100
      |||||||| |||||  ||| ||||| ||||||||||||  ||  ||||||
seq2  TTCGTAAA-TATGG--CACAAGAGC-TTAAGCTGTAAA--TG-GCCATCC  82

seq1  CGGGCCAAATTAATGGTCTTTTACTTTCTGTTTTTATAAATTATAAACCC  150
        || |  | |||| ||| |||||||   |||||     || ||||||||
seq2  --GGAC-TAGTAAT-GTCATTTACTT--CGTTTT-----ATAATAAACCC  121

seq1  CAGATGTGTCAAATTATGTAATGAGAACCATATAAAAAGAAAATTGTATT  200
      ||||| ||||||||||||||  ||||  || |||||||||||||||||||
seq2  CAGAT-TGTCAAATTATGTATGGAGA--CAAATAAAAAGAAAATTGTATT  168

seq1  TTAAAGAATTTAGTAATTTTCCTACTTTACAGGGGTTTCTCTGGGTCTTA  250
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  TTAAAGAATTTAGTAATTTT-CTACTTTACAGGGG-TTCTCTGGGTC-TA  215

seq1  TCTTAATGGGAGAGAAGAAACATGAACCTTGTATGCTTTCCCCTTTGGTT  300
      || |||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TC-TAAT-GGAGAGAAGAAACATGAACCTTGTATGCTTTCCCCTTTGGGT  263

seq1  GCAGTGCCAGGAGAGCATGAATTGTCAGGGAAAATGCTTTTCTTGGGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCAGGAGAGCATGAATTGTCAGGGAAAATGCTTTTCTTGGGCCG  313

seq1  ATTTTTTAAATAGAGGAGAGCCAGCTGCTGAGATAAGCCTTGTGCTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAATAGAGGAGAGCCAGCTGCTGAGATAAGCCTTGTGCTGTAG  363

seq1  CAAGCCTACGCATCCTTGTTTGGTCTTGGATCTTATCTGTCCACAGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTACGCATCCTTGTTTGGTCTTGGATCTTATCTGTCCACAGCAGC  413

seq1  AACAGCAGCTTCCTAACAAATGAGGTTCAAAGAGACGAAGCCCGTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGCTTCCTAACAAATGAGGTTCAAAGAGACGAAGCCCGTGTTTG  463

seq1  TGCCTCTCATTGGAATGTTTGCCAGGAGCACCACAGATTTCGTCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCATTGGAATGTTTGCCAGGAGCACCACAGATTTCGTCACCATG  513

seq1  TCCATCCCTGCTCAAACTCTTTGAACGCTTATCATCTGCCTCCATTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCTGCTCAAACTCTTTGAACGCTTATCATCTGCCTCCATTTCCT  563

seq1  CCTGCCTGGCCCCAGAGCAAGAATCATTTGTAATCATTAGCAGAATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGGCCCCAGAGCAAGAATCATTTGTAATCATTAGCAGAATGGAA  613

seq1  TGTGCTGTGTTAAAGTGTCTAATACTTAACATCTCTAAGACAGACTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGTTAAAGTGTCTAATACTTAACATCTCTAAGACAGACTGGAA  663

seq1  GGCTAGGGTTAGATCTCAGCTGTATAGTCTTGGCCTTCACTACGTTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGTTAGATCTCAGCTGTATAGTCTTGGCCTTCACTACGTTCAAT  713

seq1  CACCAGCACTGCCAAAATAAATAAGTAAATAAATAAAAAGACGAGGAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCACTGCCAAAATAAATAAGTAAATAAATAAAAAGACGAGGAACG  763

seq1  TCTCTGAGACGACCCTTTAAAAAAAATCAGCTTGGTCTCAGATTGGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGACGACCCTTTAAAAAAAATCAGCTTGGTCTCAGATTGGAATA  813

seq1  TTTTACACTTATTCCCCTTCAGCTTAGTAATTTCATTGTTTCATAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTTATTCCCCTTCAGCTTAGTAATTTCATTGTTTCATAGCTGC  863

seq1  TGGGTTTCATCCACAGAGATTGTATAATTAAAAATTAAATTCCAGTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCATCCACAGAGATTGTATAATTAAAAATTAAATTCCAGTGTGA  913

seq1  TCTTCCATGAAGTTCCATGCAGACTTATACCCCCTACTGAAAACTCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATGAAGTTCCATGCAGACTTATACCCCCTACTGAAAACTCTATA  963

seq1  AGAACTCGATTAGAAAACAGCAGCTGTCCAGCCTACTCCAGAGCTGACCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCGATTAGAAAACAGCAGCTGTCCAGCCTACTCCAGAGCTGACCC  1013

seq1  AGGAGTTCTGTATTCTCACCAGCTGCCCAGCCTGCTCTAGAGCTGACTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCTGTATTCTCACCAGCTGCCCAGCCTGCTCTAGAGCTGACTCC  1063

seq1  GGGGTTCTGTAGTCTCACCAGCTGCCCAGTCTGCTCTAGAGTCGATCCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTGTAGTCTCACCAGCTGCCCAGTCTGCTCTAGAGTCGATCCCA  1113

seq1  GGACTTTGCATTCTTGCAGGCTGTCCAGCCTGCTCTAAAGCTGACCTCAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGCATTCTTGCAGGCTGTCCAGCCTGCTCTAAAGCTGACCTCAG  1163

seq1  AATTCTGAATTCC  1213
      |||||||||||||
seq2  AATTCTGAATTCC  1176

seq1: chr3_145315000_145315114
seq2: B6Ng01-039C24.g_71_185

seq1  CTTGTTTTTCACGCAATCTGTCTATCATGATTTAAAATAAAGTTGCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTCACGCAATCTGTCTATCATGATTTAAAATAAAGTTGCAGTG  50

seq1  GATGATCCAACTGGCCTGAATATGCTGTGTTCCTTTGCTGAGGGGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCCAACTGGCCTGAATATGCTGTGTTCCTTTGCTGAGGGGAGTTG  100

seq1  GAGGGTGAGGGGGGG  115
      |||||||||||||||
seq2  GAGGGTGAGGGGGGG  115