BAC Information

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BAC

Clone NameB6Ng01-039D03
Chromosome3 (Build37)
Map Location 77,499,995 - 77,623,350
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039D03.bB6Ng01-039D03.g
ACCDH866532DH866533
length9751,109
definitionDH866532|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D03, 5' end.DH866533|Mus musculus domesticus DNA, BAC clone: B6Ng01-039D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,622,836 - 77,623,350)(77,499,995 - 77,501,121)
sequence
gaattcaatctaggatagttataaagaaaagaacacatagtgtttgtcat
ttacatgctggtgtgcctcccaaggagtatttttatttttaattatatca
atttctctgaatgctttatgtttttctttatagttaaataatacatacat
atataatagaatacaaaatattctattatgtatatgtaccacatatttat
tattcatttatctgttgtttggcatctaggctacctccatttgcaagcta
tgccctagaacagggtagcaatgaggagagacgtgcatgtctgtatctcc
actatagaaaatggtgtatgtgcgtatgagtggcaagacttggtcatgtg
gtagttttatttgatgtgttttgggaagcattcagactgtgttccaaata
tgatacactagtttaccttcccaataacagagtatactagtcctcctttc
ccaacagcatagcagcctttgttgtcattggtatccttgatgttggttat
tctaagtgtggtgacgtagagatttagtgtgcatttctctaatacctaag
aatattgaacactttcttttttttttttttccattttttattaggtattt
aactcatttacatttccaatgctataccaaaagtcccccatatccaccca
cccccactcccctgcccacccactccccctttttggccctggtattcccc
tgtactggggcatataaagtttgcaagtccaatgggcctctctttccagt
gatggccgactaggccatcttttgatatatatgcagctagagtcaagagc
tccggggtactggttagctcataatgttgttccacctatagggttgcaga
tccctttagctccttggctactttctctagctcctccattgggagcccta
tgatccatccattagctgactgtgagcatccacttctgtgtttgctgggc
cccggcatagtctcacaagagacag
gaattcagtgaaaagctgagagaagccagaatgaatcagtgaaattagtg
aggagtttgagccaaaacaactgtgttgaaccagcctaatagagttcaga
aagaactagaaagagtgagcttattcaacagtaatcctctgaaacagcaa
ctacataaagtgaataaaagatatatttacaatatttacttagaatatga
agggctctaatgtggaaggaagacaaagctaagctacctcttctcctgtc
acaaccccttccatcatgattacactatggatgcttgccacactgttacc
tctttatgtcccctttttgcctttttgaatttttctacaggcttgaacat
tgccccacatgggaaacttcttcctccccatctagcatggaaagataggc
tacttctgtttctcttcacagccaccctctatttatatcagcctgtagcc
aactatcacaaacagtgtcctgttcccagtatcgtgatggtaatacctta
ctgagaaagataccacagattagagtcaaagaacatggagataggaagtt
ggtactggcttcaaagtttcatgctaagcatactaccacagaggtaatta
tcaatcttagacatctgtgaaatctgtgaggtgcagtaatgattgaattt
aaaagacatgtatattggtgtaataaggaaatgaatataatatcatcctg
agtgaggtaacccagttacacacatggtatgtactcgctgataagtggat
attaggggaaaagcttggaatactcatgatacaatttacaaacaatatga
atctcaagaaggaggaagaccaaagtgtggatgcctcagtcttacttaga
agggaggacaaaataatcacaggaagtagaacgtaggaagaacttgtgag
gaagtaaaaggggagaggagaaaggggggcagatcacgtatggaagagac
agggagatgaacagagggtcaggatattgacagagttgtgtagcatagga
agaaccaacaccccacacaccacccagagctcctagaactaatcaccaac
agcgtataacatctagtgaaccatgcctctagctgccaactagcaagatg
acttatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77622836_77623350
seq2: B6Ng01-039D03.b_46_560 (reverse)

seq1  GTCACCACACTTAGAATAACCAACATCAAGGATACCAATGACAACAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACACTTAGAATAACCAACATCAAGGATACCAATGACAACAAAGG  50

seq1  CTGCTATGCTGTTGGGAAAGGAGGACTAGTATACTCTGTTATTGGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGCTGTTGGGAAAGGAGGACTAGTATACTCTGTTATTGGGAAGG  100

seq1  TAAACTAGTGTATCATATTTGGAACACAGTCTGAATGCTTCCCAAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGTGTATCATATTTGGAACACAGTCTGAATGCTTCCCAAAACAC  150

seq1  ATCAAATAAAACTACCACATGACCAAGTCTTGCCACTCATACGCACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAAACTACCACATGACCAAGTCTTGCCACTCATACGCACATAC  200

seq1  ACCATTTTCTATAGTGGAGATACAGACATGCACGTCTCTCCTCATTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCTATAGTGGAGATACAGACATGCACGTCTCTCCTCATTGCTA  250

seq1  CCCTGTTCTAGGGCATAGCTTGCAAATGGAGGTAGCCTAGATGCCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTAGGGCATAGCTTGCAAATGGAGGTAGCCTAGATGCCAAACA  300

seq1  ACAGATAAATGAATAATAAATATGTGGTACATATACATAATAGAATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAATGAATAATAAATATGTGGTACATATACATAATAGAATATTT  350

seq1  TGTATTCTATTATATATGTATGTATTATTTAACTATAAAGAAAAACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTATTATATATGTATGTATTATTTAACTATAAAGAAAAACATAA  400

seq1  AGCATTCAGAGAAATTGATATAATTAAAAATAAAAATACTCCTTGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAGAGAAATTGATATAATTAAAAATAAAAATACTCCTTGGGAGG  450

seq1  CACACCAGCATGTAAATGACAAACACTATGTGTTCTTTTCTTTATAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCATGTAAATGACAAACACTATGTGTTCTTTTCTTTATAACTA  500

seq1  TCCTAGATTGAATTC  515
      |||||||||||||||
seq2  TCCTAGATTGAATTC  515

seq1: chr3_77499995_77501121
seq2: B6Ng01-039D03.g_63_1171

seq1  GAATTCAGTGAAAAGCTGAGAGAAGCCAGAATGAATCAGTGAAATTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAAAGCTGAGAGAAGCCAGAATGAATCAGTGAAATTAGTG  50

seq1  AGGAGTTTGAGCCAAAACAACTGTGTTGAACCAGCCTAATAGAGTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGAGCCAAAACAACTGTGTTGAACCAGCCTAATAGAGTTCAGA  100

seq1  AAGAACTAGAAAGAGTGAGCTTATTCAACAGTAATCCTCTGAAACAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAGAAAGAGTGAGCTTATTCAACAGTAATCCTCTGAAACAGCAA  150

seq1  CTACATAAAGTGAATAAAAGATATATTTACAATATTTACTTAGAATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAAGTGAATAAAAGATATATTTACAATATTTACTTAGAATATGA  200

seq1  AGGGCTCTAATGTGGAAGGAAGACAAAGCTAAGCTACCTCTTCTCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTAATGTGGAAGGAAGACAAAGCTAAGCTACCTCTTCTCCTGTC  250

seq1  ACAACCCCTTCCATCATGATTACACTATGGATGCTTGCCACACTGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCTTCCATCATGATTACACTATGGATGCTTGCCACACTGTTACC  300

seq1  TCTTTATGTCCCCTTTTTGCCTTTTTGAATTTTTCTACAGGCTTGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTCCCCTTTTTGCCTTTTTGAATTTTTCTACAGGCTTGAACAT  350

seq1  TGCCCCACATGGGAAACTTCTTCCTCCCCATCTAGCATGGAAAGATAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACATGGGAAACTTCTTCCTCCCCATCTAGCATGGAAAGATAGGC  400

seq1  TACTTCTGTTTCTCTTCACAGCCACCCTCTATTTATATCAGCCTGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTTTCTCTTCACAGCCACCCTCTATTTATATCAGCCTGTAGCC  450

seq1  AACTATCACAAACAGTGTCCTGTTCCCAGTATCGTGATGGTAATACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCACAAACAGTGTCCTGTTCCCAGTATCGTGATGGTAATACCTTA  500

seq1  CTGAGAAAGATACCACAGATTAGAGTCAAAGAACATGGAGATAGGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGATACCACAGATTAGAGTCAAAGAACATGGAGATAGGAAGTT  550

seq1  GGTACTGGCTTCAAAGTTTCATGCTAAGCATACTACCACAGAGGTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGCTTCAAAGTTTCATGCTAAGCATACTACCACAGAGGTAATTA  600

seq1  TCAATCTTAGACATCTGTGAAATCTGTGAGGTGCAGTAATGATTGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTAGACATCTGTGAAATCTGTGAGGTGCAGTAATGATTGAATTT  650

seq1  AAAAGACATGTATATTGGTGTAATAAGGAAATGAATATAATATCATCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACATGTATATTGGTGTAATAAGGAAATGAATATAATATCATCCTG  700

seq1  AGTGAGGTAACCCAGTTACACACATGGTATGTACTCGCTGATAAGTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTAACCCAGTTACACACATGGTATGTACTCGCTGATAAGTGGAT  750

seq1  ATTAGGGGAAAAGCTTGGAATACTCATGATACAATTTACAAACAATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGAAAAGCTTGGAATACTCATGATACAATTTACAAACAATATGA  800

seq1  ATCTCAAGAAGGAGGAAGACCAAAGTGTGGATGCCTCAGTCTTACTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGAAGGAGGAAGACCAAAGTGTGGATGCCTCAGTCTTACTTAGA  850

seq1  AGGGAGGACAAAATAATCACAGGAAGTAGAAGGTAGGAAGAACTTGTGAG  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGAGGACAAAATAATCACAGGAAGTAGAACGTAGGAAGAACTTGTGAG  900

seq1  GAAGGTAAAAGGGGGAGAGGAGAAAAGGGGGGGCAGGATCAGGTATGGAA  950
      ||| |||||| ||||||||||||||  |||||||| ||||| ||||||||
seq2  GAA-GTAAAA-GGGGAGAGGAGAAA--GGGGGGCA-GATCACGTATGGAA  945

seq1  GGAGACAGGGGAGATGAACAGAGGGTCAGGATATTGAACAGAGTTGTGTA  1000
       |||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  -GAGACA-GGGAGATGAACAGAGGGTCAGGATATTG-ACAGAGTTGTGTA  992

seq1  GCAATAGGAAGAACAAACAACCCCCACACACACCCAGAGCTCCCAGGAAC  1050
      || ||||||||||| |||| ||| ||||| ||||||||||||| | ||||
seq2  GC-ATAGGAAGAACCAACACCCCACACAC-CACCCAGAGCTCCTA-GAAC  1039

seq1  TAAACCACCAACCAGCGTATACACATCTAGTGACCCATGGCTCTAGCTGC  1100
      | || |||||| ||||||||| ||||||||||| ||||| ||||||||||
seq2  T-AATCACCAA-CAGCGTATA-ACATCTAGTGAACCATGCCTCTAGCTGC  1086

seq1  ATACATAGCAGAGGATGAACTTATCTG  1127
        || ||||  | |||| |||||||||
seq2  CAAC-TAGC--AAGATG-ACTTATCTG  1109