BAC Information

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BAC

Clone NameB6Ng01-039I05
Chromosome3 (Build37)
Map Location 81,020,186 - 81,129,516
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I05.bB6Ng01-039I05.g
ACCDH866766DH866767
length2731,120
definitionDH866766|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I05, 5' end.DH866767|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,020,186 - 81,020,458)(81,128,401 - 81,129,516)
sequence
tctgaccttcagctgagagatgaaggacacaggagaaagatgctgctgct
tctcagctccccacaggccagactactattttgtcagtgaagcaaggtta
taaaatttccttttctctctgtctgggagattgctaactgtgtaaagttg
tttgctgtccaacctgactacctacctgagttcaagttccaggatccaga
aggggaaagaagtgaaccaactcctccaagttgttctctgagtagcatat
gggcagcatccctccctccctcc
gaattctattctgagcctcacagtggctaacagagaaagataaatggcat
ccatacaaagagactcaatagaagaccatggtacaagtataatggctaga
gtcccaactccagccttgcccctattggaaagccatggttagaggtgttg
atagcagccaaggtttaatcattggtgacatttagtttgtgtgctcaata
ttctatgctctgaaaactagccaacaaaagccaatggaacaattcaattg
ccacagaatgccaataatccacagaataaagtgttaagtctctggaaaaa
ttgctctttattgtttggaagtccttgaaacccaattataataatcttta
aaaatacatgggtttgaaaaagagtgagaggggtatgtggaaggacatag
aaggaagaatgggaagttggagatgatgtaattatattagcatctcaaaa
acaataaaaacatattaaaaaatcaagttgggcgtacttgaattcagttc
ctgattctgcctccctatgatcatttatttatctaacctccccataaggc
tatttataggaaagctaagcagatttataaatacattcttagctcttgta
cgttgaatcatgctgctctcaaaatataaacctcacttttatttcctcat
atggtatgatgagatgagaccgtacccaagctgttaaaatacatgggtta
ggttgagcccagaaagttttcttctgtgttctaactatacctagtcccag
acctagaagctttgagcctccttacaacctaatctcccaaactgactgtt
tcaatctgaatttcctcagcttctgccggaattgctctgcttggcctcat
actaactttggctatatgttctaatcatctggctccttctcaatctctgg
ttcattctgttttgcctgtgtctaatttgttctttctgtaacctgtctct
gtaaactgtcctgataaattgccacacacacacatcaccaccacccacca
tacacccacctttttttctctcaaagatcttaacttttttctctggtgtt
tcatgtgaagggtggcatatcctatttctgactgatcacgcattttttct
cattagtcacttggtcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81020186_81020458
seq2: B6Ng01-039I05.b_52_324

seq1  TCTGACCTTCAGCTGAGAGATGAAGGACACAGGAGAAAGATGCTGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTCAGCTGAGAGATGAAGGACACAGGAGAAAGATGCTGCTGCT  50

seq1  TCTCAGCTCCCCACAGGCCAGACTACTATTTTGTCAGTGAAGCAAGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCCCCACAGGCCAGACTACTATTTTGTCAGTGAAGCAAGGTTA  100

seq1  TAAAATTTCCTTTTCTCTCTGTCTGGGAGATTGCTAACTGTGTAAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCCTTTTCTCTCTGTCTGGGAGATTGCTAACTGTGTAAAGTTG  150

seq1  TTTGCTGTCCAACCTGACTACCTACCTGAGTTCAAGTTCCAGGATCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCCAACCTGACTACCTACCTGAGTTCAAGTTCCAGGATCCAGA  200

seq1  AGGGGAAAGAAGTGAACCAACTCCTCCAAGTTGTTCTCTGAGTAGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGAAGTGAACCAACTCCTCCAAGTTGTTCTCTGAGTAGCATAT  250

seq1  GGGCAGCATCCCTCCCTCCCTCC  273
      |||||||||||||||||||||||
seq2  GGGCAGCATCCCTCCCTCCCTCC  273

seq1: chr3_81128401_81129516
seq2: B6Ng01-039I05.g_78_1183 (reverse)

seq1  GGCTGACCAAGTGACTAATAGAGAAAAAAATTCGTAGAATCAGTCAGAAA  50
      ||||||||||||||||||| ||| ||||||| |||   ||||||||||||
seq2  GGCTGACCAAGTGACTAAT-GAG-AAAAAATGCGT--GATCAGTCAGAAA  46

seq1  TAGGATATGCC-CACCTCACATGAAAACACCAGAGGAAGAAAAGTTAAGA  99
      ||||||||||| | | ||||||| |||||||||||  | |||||||||||
seq2  TAGGATATGCCACCCTTCACATG-AAACACCAGAG--AAAAAAGTTAAGA  93

seq1  TCTGTGAGAGAGAAAAAGGTGTGTGGTATGGTGGGTGGTGGTGATGTGTG  149
      ||| ||||||| ||||||||| || |||||||||||||||||||||||||
seq2  TCTTTGAGAGAAAAAAAGGTGGGT-GTATGGTGGGTGGTGGTGATGTGTG  142

seq1  TGTGTGGCAATTTTATCAGGACAGTTTTACAGAGACAGGTTACAGAAAGA  199
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TGTGTGGCAA-TTTATCAGGACAG-TTTACAGAGACAGGTTACAGAAAGA  190

seq1  ACAAATTAGACACAGGCAAAAACAGAATGAACCAGAGATTGAGAAGGAGC  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAAATTAGACACAGGC-AAAACAGAATGAACCAGAGATTGAGAAGGAGC  239

seq1  CAGATGATTAGAACATATAGCCAAAGTTAGTATGAGGCCAAGCAGAGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTAGAACATATAGCCAAAGTTAGTATGAGGCCAAGCAGAGCAA  289

seq1  TTCCGGCAGAAGCTGAGGAAATTCAGATTGAAACAGTCAGTTTGGGAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGCAGAAGCTGAGGAAATTCAGATTGAAACAGTCAGTTTGGGAGAT  339

seq1  TAGGTTGTAAGGAGGCTCAAAGCTTCTAGGTCTGGGACTAGGTATAGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTAAGGAGGCTCAAAGCTTCTAGGTCTGGGACTAGGTATAGTTA  389

seq1  GAACACAGAAGAAAACTTTCTGGGCTCAACCTAACCCATGTATTTTAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGAAGAAAACTTTCTGGGCTCAACCTAACCCATGTATTTTAACA  439

seq1  GCTTGGGTACGGTCTCATCTCATCATACCATATGAGGAAATAAAAGTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTACGGTCTCATCTCATCATACCATATGAGGAAATAAAAGTGAG  489

seq1  GTTTATATTTTGAGAGCAGCATGATTCAACGTACAAGAGCTAAGAATGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTTGAGAGCAGCATGATTCAACGTACAAGAGCTAAGAATGTA  539

seq1  TTTATAAATCTGCTTAGCTTTCCTATAAATAGCCTTATGGGGAGGTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATCTGCTTAGCTTTCCTATAAATAGCCTTATGGGGAGGTTAGA  589

seq1  TAAATAAATGATCATAGGGAGGCAGAATCAGGAACTGAATTCAAGTACGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATGATCATAGGGAGGCAGAATCAGGAACTGAATTCAAGTACGC  639

seq1  CCAACTTGATTTTTTAATATGTTTTTATTGTTTTTGAGATGCTAATATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGATTTTTTAATATGTTTTTATTGTTTTTGAGATGCTAATATAA  689

seq1  TTACATCATCTCCAACTTCCCATTCTTCCTTCTATGTCCTTCCACATACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATCTCCAACTTCCCATTCTTCCTTCTATGTCCTTCCACATACC  739

seq1  CCTCTCACTCTTTTTCAAACCCATGTATTTTTAAAGATTATTATAATTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTCTTTTTCAAACCCATGTATTTTTAAAGATTATTATAATTGG  789

seq1  GTTTCAAGGACTTCCAAACAATAAAGAGCAATTTTTCCAGAGACTTAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGGACTTCCAAACAATAAAGAGCAATTTTTCCAGAGACTTAACA  839

seq1  CTTTATTCTGTGGATTATTGGCATTCTGTGGCAATTGAATTGTTCCATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTGTGGATTATTGGCATTCTGTGGCAATTGAATTGTTCCATTG  889

seq1  GCTTTTGTTGGCTAGTTTTCAGAGCATAGAATATTGAGCACACAAACTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTGGCTAGTTTTCAGAGCATAGAATATTGAGCACACAAACTAA  939

seq1  ATGTCACCAATGATTAAACCTTGGCTGCTATCAACACCTCTAACCATGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCAATGATTAAACCTTGGCTGCTATCAACACCTCTAACCATGGC  989

seq1  TTTCCAATAGGGGCAAGGCTGGAGTTGGGACTCTAGCCATTATACTTGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAGGGGCAAGGCTGGAGTTGGGACTCTAGCCATTATACTTGTA  1039

seq1  CCATGGTCTTCTATTGAGTCTCTTTGTATGGATGCCATTTATCTTTCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCTTCTATTGAGTCTCTTTGTATGGATGCCATTTATCTTTCTCT  1089

seq1  GTTAGCCACTGTGAGGC  1116
      |||||||||||||||||
seq2  GTTAGCCACTGTGAGGC  1106