BAC Information

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BAC

Clone NameB6Ng01-039N17
Chromosome3 (Build37)
Map Location 146,694,366 - 146,847,787
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N17.bB6Ng01-039N17.g
ACCDH867000DH867001
length1,1621,062
definitionDH867000|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N17, 5' end.DH867001|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,846,613 - 146,847,787)(146,694,366 - 146,695,444)
sequence
gaattcacccatcgagagcagcttcttcattctcaagaatgtcctacaga
aactcaaaggttgcgaacccagtggctaaaactcttcatactccagtaca
tctactgctgtcccactgaggaagagctgcttccattcttggcttgcatg
gtgactgggtctcacctcctcacatctctttactcagagacatttgcttc
catttctaagtctctcacaagagtgagtatgtacaattgattgactattt
ctgttcccctcaaattcctgtgttggatcactaatcccggtttggtggca
tctagacataaagtccttcaggaaggaattgagatataagggtgaaactc
tcaataaattgtataagtgagccgagaacaaaacctcagccatccatcgg
attagctttcttcctgccacttaaggataaaaagcacacaggttgtgcaa
accaggaagaggagcctgcaccacccagctcacatccgatttcaactctt
aacccgtaggaaggtgagaatagtgtgtgtgattggtgtttaaaccacca
agtctgtggtttcctattagagcagcctgaagtgattaaacagcatctat
attggcagaaactagttggtgtgtaaaacttccgcggcaaagtatctgac
ataatgtattccccgcgttttcaaacctctgtgctttaagaatcaagctg
ggcaatggttcaaatgggcactgaaagagcaaagcagcagagtgctaaga
ttccccctttcccgtggctcccattcagcccgccgagaacactgtgagga
aggccttgatggctgaacagtaccctcatttgggtaacattcaggggaat
acttttcttgctgatttccgttttacacaatgtgggctattttcaccagc
caagttcaacttctggttcatgccaccctggctctgagtctccgctgcaa
tctttctttcttcttgggaactcccagtctttaccacaactttgtgtgca
actccagcctcgctcctcctgactgcaccattgcctaccctgaaggaatg
caaccctgttaagcactcctccattcccagctctctcaggctcctttgca
cactgcctctgccacccttcatggatgggcattgcatacacacactaatg
gaagctttgcca
gaattcattctcaactatcaagttggttcttaaaagaccacagaaagaca
cttatgtgagaaaaacctggtaaattaattagatggattttatggagaag
ctgaagcttaggcaaaggctgccaagttgggaaattcactcagttgagag
agaggaaagagtgtgaagaggcctacgtgaagcctgtggagctaggtaga
aaggaatgcactggaatgttccagaatcacctgggaagaaagacctagtg
aaggttcgtctacagtggattggtctgtgagtataaggtaattgatgtgg
gaagacccagcccattgtgggcggcaatattcttaggcaggggttcctga
ttgtatagagttgagaagggggtgagcaaaactaaacatgcatgtatcct
ttgcctctccgctttggctgtggctgtgatgtgaatgggtttctcaagct
cctgcctgggttttattctgtgatttctccacagtgatggaactattaac
cagacactgggaactaaaactaagccctgcctcttttaagtgttattttc
cccaagatcttttattacagcaaccgaaaataaactagaacatgaaatgg
gatcttgaaggttaaatctctttagcatcaggggggaaaaatctatattt
gagcgattcttattagtaaagtttatatgtttgagtgattctttattagt
aaagtttgtagctaggagaccggagtgccatgatgggtcccttcaagaca
aagcattttctcttcagtctaggagcgggtaagtaagacaggaagcgtct
caccatgaactccaaacacatttgaaagagggaaggagttctttcctgaa
agatgatggtagacagaagtctgggccactaaaaagcacgtagagacaaa
tatgctaaggaggtaaggtaggagcttgaaagtggggctttagcaggagt
aagacaggacagtggcctatcttggctgaatggatagcacagatggagag
tgaggactaactactgtctatggaagagattagacttgatctttcactaa
ctgatcctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146846613_146847787
seq2: B6Ng01-039N17.b_45_1206 (reverse)

seq1  TGGC-AAGCTTCCATTATGTGTGTGATATGCATATGCCCCCAT-CATGAG  48
      |||| |||||||||||| ||||||| |||||| |||  ||||| ||||| 
seq2  TGGCAAAGCTTCCATTA-GTGTGTG-TATGCA-ATG--CCCATCCATGAA  45

seq1  AGTGGGCAGGAGGGCAGCGTGTGGCAAAAGGAGCCCTGAG-GAGCTGGGG  97
       |  |||||   ||||| |||     ||||||| |||||| |||||||| 
seq2  GGGTGGCAG--AGGCAGTGTG----CAAAGGAG-CCTGAGAGAGCTGGGA  88

seq1  ATGGGAGGAGTGCTTATACAGGGTTGCATTCC-TCAGGGTAGGCAATGGT  146
      || ||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  AT-GGAGGAGTGCTTA-ACAGGGTTGCATTCCTTCAGGGTAGGCAATGGT  136

seq1  GCAGTCAGGAGGAGCGAGGCTGGAGTTTGCACACATAGTTGTGGTAAAGA  196
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  GCAGTCAGGAGGAGCGAGGCTGGAG-TTGCACACAAAGTTGTGGTAAAGA  185

seq1  CTGGGGAGTTTCCCAAGAAGAAAGAAAGATTGCAGCGGAGACTCAGAGCC  246
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CT-GGGAG-TTCCCAAGAAGAAAGAAAGATTGCAGCGGAGACTCAGAGCC  233

seq1  AGGGTGGCATGAACCAGAAGTTGAACTTGGCTGGTGAAAATAGCCCACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCATGAACCAGAAGTTGAACTTGGCTGGTGAAAATAGCCCACAT  283

seq1  TGTGTAAAACGGAAATCAGCAAGAAAAGTATTCCCCTGAATGTTACCCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAACGGAAATCAGCAAGAAAAGTATTCCCCTGAATGTTACCCAA  333

seq1  ATGAGGGTACTGTTCAGCCATCAAGGCCTTCCTCACAGTGTTCTCGGCGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTACTGTTCAGCCATCAAGGCCTTCCTCACAGTGTTCTCGGCGG  383

seq1  GCTGAATGGGAGCCACGGGAAAGGGGGAATCTTAGCACTCTGCTGCTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGGGAGCCACGGGAAAGGGGGAATCTTAGCACTCTGCTGCTTTG  433

seq1  CTCTTTCAGTGCCCATTTGAACCATTGCCCAGCTTGATTCTTAAAGCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGTGCCCATTTGAACCATTGCCCAGCTTGATTCTTAAAGCACA  483

seq1  GAGGTTTGAAAACGCGGGGAATACATTATGTCAGATACTTTGCCGCGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTGAAAACGCGGGGAATACATTATGTCAGATACTTTGCCGCGGAA  533

seq1  GTTTTACACACCAACTAGTTTCTGCCAATATAGATGCTGTTTAATCACTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACACACCAACTAGTTTCTGCCAATATAGATGCTGTTTAATCACTT  583

seq1  CAGGCTGCTCTAATAGGAAACCACAGACTTGGTGGTTTAAACACCAATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTCTAATAGGAAACCACAGACTTGGTGGTTTAAACACCAATCA  633

seq1  CACACACTATTCTCACCTTCCTACGGGTTAAGAGTTGAAATCGGATGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTATTCTCACCTTCCTACGGGTTAAGAGTTGAAATCGGATGTGA  683

seq1  GCTGGGTGGTGCAGGCTCCTCTTCCTGGTTTGCACAACCTGTGTGCTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGGTGCAGGCTCCTCTTCCTGGTTTGCACAACCTGTGTGCTTTT  733

seq1  TATCCTTAAGTGGCAGGAAGAAAGCTAATCCGATGGATGGCTGAGGTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAAGTGGCAGGAAGAAAGCTAATCCGATGGATGGCTGAGGTTTT  783

seq1  GTTCTCGGCTCACTTATACAATTTATTGAGAGTTTCACCCTTATATCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGGCTCACTTATACAATTTATTGAGAGTTTCACCCTTATATCTCA  833

seq1  ATTCCTTCCTGAAGGACTTTATGTCTAGATGCCACCAAACCGGGATTAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCCTGAAGGACTTTATGTCTAGATGCCACCAAACCGGGATTAGT  883

seq1  GATCCAACACAGGAATTTGAGGGGAACAGAAATAGTCAATCAATTGTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAACACAGGAATTTGAGGGGAACAGAAATAGTCAATCAATTGTACA  933

seq1  TACTCACTCTTGTGAGAGACTTAGAAATGGAAGCAAATGTCTCTGAGTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTCTTGTGAGAGACTTAGAAATGGAAGCAAATGTCTCTGAGTAA  983

seq1  AGAGATGTGAGGAGGTGAGACCCAGTCACCATGCAAGCCAAGAATGGAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGAGGAGGTGAGACCCAGTCACCATGCAAGCCAAGAATGGAAG  1033

seq1  CAGCTCTTCCTCAGTGGGACAGCAGTAGATGTACTGGAGTATGAAGAGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTCCTCAGTGGGACAGCAGTAGATGTACTGGAGTATGAAGAGTT  1083

seq1  TTAGCCACTGGGTTCGCAACCTTTGAGTTTCTGTAGGACATTCTTGAGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACTGGGTTCGCAACCTTTGAGTTTCTGTAGGACATTCTTGAGAA  1133

seq1  TGAAGAAGCTGCTCTCGATGGGTGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  TGAAGAAGCTGCTCTCGATGGGTGAATTC  1162

seq1: chr3_146694366_146695444
seq2: B6Ng01-039N17.g_66_1127

seq1  GAATTCATTCTCAACTATCAAGTTGGTTCTTAAAAGACCACAGAAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAACTATCAAGTTGGTTCTTAAAAGACCACAGAAAGACA  50

seq1  CTTATGTGAGAAAAACCTGGTAAATTAATTAGATGGATTTTATGGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGAGAAAAACCTGGTAAATTAATTAGATGGATTTTATGGAGAAG  100

seq1  CTGAAGCTTAGGCAAAGGCTGCCAAGTTGGGAAATTCACTCAGTTGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTAGGCAAAGGCTGCCAAGTTGGGAAATTCACTCAGTTGAGAG  150

seq1  AGAGGAAAGAGTGTGAAGAGGCCTACGTGAAGCCTGTGGAGCTAGGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGAGTGTGAAGAGGCCTACGTGAAGCCTGTGGAGCTAGGTAGA  200

seq1  AAGGAATGCACTGGAATGTTCCAGAATCACCTGGGAAGAAAGACCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGCACTGGAATGTTCCAGAATCACCTGGGAAGAAAGACCTAGTG  250

seq1  AAGGTTCGTCTACAGTGGATTGGTCTGTGAGTATAAGGTAATTGATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCGTCTACAGTGGATTGGTCTGTGAGTATAAGGTAATTGATGTGG  300

seq1  GAAGACCCAGCCCATTGTGGGCGGCAATATTCTTAGGCAGGGGTTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGCCCATTGTGGGCGGCAATATTCTTAGGCAGGGGTTCCTGA  350

seq1  TTGTATAGAGTTGAGAAGGGGGTGAGCAAAACTAAACATGCATGTATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGAGTTGAGAAGGGGGTGAGCAAAACTAAACATGCATGTATCCT  400

seq1  TTGCCTCTCCGCTTTGGCTGTGGCTGTGATGTGAATGGGTTTCTCAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTCCGCTTTGGCTGTGGCTGTGATGTGAATGGGTTTCTCAAGCT  450

seq1  CCTGCCTGGGTTTTATTCTGTGATTTCTCCACAGTGATGGAACTATTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGGGTTTTATTCTGTGATTTCTCCACAGTGATGGAACTATTAAC  500

seq1  CAGACACTGGGAACTAAAACTAAGCCCTGCCTCTTTTAAGTGTTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGGGAACTAAAACTAAGCCCTGCCTCTTTTAAGTGTTATTTTC  550

seq1  CCCAAGATCTTTTATTACAGCAACCGAAAATAAACTAGAACATGAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGATCTTTTATTACAGCAACCGAAAATAAACTAGAACATGAAATGG  600

seq1  GATCTTGAAGGTTAAATCTCTTTAGCATCAGGGGGGAAAAATCTATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAAGGTTAAATCTCTTTAGCATCAGGGGGGAAAAATCTATATTT  650

seq1  GAGCGATTCTTATTAGTAAAGTTTATATGTTTGAGTGATTCTTTATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTCTTATTAGTAAAGTTTATATGTTTGAGTGATTCTTTATTAGT  700

seq1  AAAGTTTGTAGCTAGGAGACCGGAGTGCCATGATGGGTCCCTTCAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGTAGCTAGGAGACCGGAGTGCCATGATGGGTCCCTTCAAGACA  750

seq1  AAGCATTTTCTCTTCAGTCTAGGAGCGGGTAAGTAAGACAGGAAGCGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCTCTTCAGTCTAGGAGCGGGTAAGTAAGACAGGAAGCGTCT  800

seq1  CACCATGAACTCCAAACACATTTGAAAGAGGGAAGGAGTTCTTTCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAACTCCAAACACATTTGAAAGAGGGAAGGAGTTCTTTCCTGAA  850

seq1  AGAATGATGGTAGACAGAAGTCTGGGCCACTAAAAAGCACGTAAGAAGAC  900
      || ||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AG-ATGATGGTAGACAGAAGTCTGGGCCACTAAAAAGCACGTA--GAGAC  897

seq1  AAATATGCTAAGGAGGTAAGGTAGGAGCTTGAAAGTGGGGCTTTAGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATATGCTAAGGAGGTAAGGTAGGAGCTTGAAAGTGGGGCTTTA-GCAG  946

seq1  GAAGTTAAGACAGGACAGTGGCCTAGTCTTGGCTGAAATGGATAGCAACA  1000
      ||   |||||||||||||||||||| ||||||||| |||||||||| |||
seq2  GA--GTAAGACAGGACAGTGGCCTA-TCTTGGCTG-AATGGATAGC-ACA  991

seq1  GATGGAGAAGTGAAGGACTAACTACTGTCCTAT-GAAGAGATTAGAACTA  1049
      ||||||| |||| ||||||||||||||| |||| ||||||||||| ||| 
seq2  GATGGAG-AGTG-AGGACTAACTACTGT-CTATGGAAGAGATTAG-ACT-  1036

seq1  TGACTCTTTCAGCTAACCTGATCCCTGGGG  1079
      ||| ||||||| |||| ||||| |||||||
seq2  TGA-TCTTTCA-CTAA-CTGAT-CCTGGGG  1062