BAC Information

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BAC

Clone NameB6Ng01-040C21
Chromosome3 (Build37)
Map Location 99,983,849 - 99,985,016
singlet/doubletsinglet
Overlap geneGdap2
Upstream geneWars2, Tbx15, M6pr-ps, Spag17, LOC623045, Wdr3
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C21.bB6Ng01-040C21.g
ACCDH867228DH867229
length1,1611,168
definitionDH867228|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C21, 5' end.DH867229|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctctgtgcattgttctgggaaaacggtccaaaggggtgcttta
ctacatagtaattcctcagaccaacccagttttaagagttatttacaata
acagataaagatcaatagtgggaagattccttctaggaatgtaattggca
gaaaggaagcaagtcgctcttaaaactgagctagtcaaattgtctgaggg
ccatttcacctggatcttaaaggcggtagaattatagcatcttattcaaa
acaaacaggcacagagacaccagtgaacttctggaatttgacaataatga
atggcttgcacacatttacagtgcatgcttgctaaaagtgaacccattga
catatgtctttcattaataagcaagagctttcttgcttattaaactatta
gcaaaacatttttatacaaaaacccagtggtttcatgttcagtgtaccaa
gactttatagtatctttttttccccagttcatatacaggtaaaaccataa
acatcagcagtgaagtaaaattactgggttacttattcaaaaagaattat
gagttactggtctgctgtattctgtcctatccaggagcagccagcagtga
ggcaagaagtccatggtgctagttctgattgtccacacttaagccttgaa
ggtgtcaatatcctggatgtcactttcactagttaaagcgtcttcataaa
gataaagcatgtgacatcctgtttggctgccaggcagaggacccagctgc
aactagaaggagcagtgtagaccggaatgccgaaatccttgagtcatgag
gtcaatctcattcctcttcctggcagaagtctccttctaaatgagcacca
ttgagagactttgattggatttctacttggcattaccttccataggaaac
atacagtaattactgttaaggggcagttacataagaatgtcaaaatttta
cataatgaaactagtatagagaaaatttattttagatgctgttttaagga
aaagcagaccaggaaaaaaacaaattgcttctagagcagcgagttgcaga
tcttcatcttgcctctcaacaaatgagtctcctgcactaagtctctggaa
ctactatactaccaagcagccataaagtataattagtcattgttggtttt
tgatgagtgca
gaattctttctcgctcttcggttgttaagagcatctgcaaccgctgttga
cagtcatctcaagtaggctgatgagagaacataaggaactccaccaaccc
tgtgaggcgttggggatcctgagaaaggggggtggttaattttctagtta
taaataccagcagaggaaaatgaccagtactgaagggtttaaagtttggg
cgggtccaccagagtccgcccggactctgccctctgcggctccctgtggc
tccatgtactcacagtggtccgcctctcaacgccccgaggggtttggggg
ttcccttggcagctggggtcaaggctgtcgataaggggaaggttgtggac
taggccactcaggaggctttatagattttagaggagccgatttagctggt
ggctccgattcgggagaagccttcaatttctcttgtaacatgagagcaca
accacaattttgagaagcaaaacccaattttaacagtgtaaacaatctat
tttctttaaaaatgaactccaaaaacattacttgctacaaagtttggctg
tccgttcctgcacacaaacacaagaaggtgtagccgccaatatatctatt
ataaatcgggtttctaggataagaattacatagaatattacccaattcag
gcgtatctttagagacctgttcctatgggttgtctcatgctgcatgttgt
agttctaaattactctaacccagagttaccagttttaagtcaactttttg
ttaccaatgttacaaatttttaattataaccaataacttatgagccacta
atctataaccaagacatataaaacatatttatacttttgaaactatttag
gaacaaaatgaatggccgtatacattttgtccatttaaaccaacaaattc
ttcttttttttttttagctgtaatttcagaggggagcacttgtcacctga
tgatctatatcacagcacagagaattttgtaggaaaacagccatccggtc
ccttaccaaagaactggagagctgctgttccttaagaagcacgttatatt
taagtcctagaaggctctcagcccacctataattcctactcagtgaggct
cagaccactgattgggttattatagtgccaatatccgatatgcggagatt
cgctttccaaccgacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99983849_99985016
seq2: B6Ng01-040C21.b_47_1207

seq1  GAATTCTCTCTGTGCATTGTTCTGGGAAAACGGTCCAAAGGGGTGCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTGCATTGTTCTGGGAAAACGGTCCAAAGGGGTGCTTTA  50

seq1  CTACATAGTAATTCCTCAGACCAACCCAGTTTTAAGAGTTATTTACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTAATTCCTCAGACCAACCCAGTTTTAAGAGTTATTTACAATA  100

seq1  ACAGATAAAGATCAATAGTGGGAAGATTCCTTCTAGGAATGTAATTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAGATCAATAGTGGGAAGATTCCTTCTAGGAATGTAATTGGCA  150

seq1  GAAAGGAAGCAAGTCGCTCTTAAAACTGAGCTAGTCAAATTGTCTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGCAAGTCGCTCTTAAAACTGAGCTAGTCAAATTGTCTGAGGG  200

seq1  CCATTTCACCTGGATCTTAAAGGCGGTAGAATTATAGCATCTTATTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCACCTGGATCTTAAAGGCGGTAGAATTATAGCATCTTATTCAAA  250

seq1  ACAAACAGGCACAGAGACACCAGTGAACTTCTGGAATTTGACAATAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGGCACAGAGACACCAGTGAACTTCTGGAATTTGACAATAATGA  300

seq1  ATGGCTTGCACACATTTACAGTGCATGCTTGCTAAAAGTGAACCCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGCACACATTTACAGTGCATGCTTGCTAAAAGTGAACCCATTGA  350

seq1  CATATGTCTTTCATTAATAAGCAAGAGCTTTCTTGCTTATTAAACTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTTTCATTAATAAGCAAGAGCTTTCTTGCTTATTAAACTATTA  400

seq1  GCAAAACATTTTTATACAAAAACCCAGTGGTTTCATGTTCAGTGTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACATTTTTATACAAAAACCCAGTGGTTTCATGTTCAGTGTACCAA  450

seq1  GACTTTATAGTATCTTTTTTTCCCCAGTTCATATACAGGTAAAACCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATAGTATCTTTTTTTCCCCAGTTCATATACAGGTAAAACCATAA  500

seq1  ACATCAGCAGTGAAGTAAAATTACTGGGTTACTTATTCAAAAAGAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCAGTGAAGTAAAATTACTGGGTTACTTATTCAAAAAGAATTAT  550

seq1  GAGTTACTGGTCTGCTGTATTCTGTCCTATCCAGGAGCAGCCAGCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTGGTCTGCTGTATTCTGTCCTATCCAGGAGCAGCCAGCAGTGA  600

seq1  GGCAAGAAGTCCATGGTGCTAGTTCTGATTGTCCACACTTAAGCCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAAGTCCATGGTGCTAGTTCTGATTGTCCACACTTAAGCCTTGAA  650

seq1  GGTGTCAATATCCTGGATGTCACTTTCACTAGTTAAAGCGTCTTCATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAATATCCTGGATGTCACTTTCACTAGTTAAAGCGTCTTCATAAA  700

seq1  GATAAAGCATGTGACATCCTGTTTGGCTGCCAGGCAGAGGACCCAGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCATGTGACATCCTGTTTGGCTGCCAGGCAGAGGACCCAGCTGC  750

seq1  AACTAGAAGGAGCAGTGTAGACCGGAATGCCGAAATCCTTGAGTCATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGGAGCAGTGTAGACCGGAATGCCGAAATCCTTGAGTCATGAG  800

seq1  GTCAATCTCATTCCTCTTCCTGGCAGAAGTCTCCTTCTAAATGAGCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTCATTCCTCTTCCTGGCAGAAGTCTCCTTCTAAATGAGCACCA  850

seq1  TTGAGAGACTTTGATTGGATTTCTACTTGGCATTACCTTCCATAGGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACTTTGATTGGATTTCTACTTGGCATTACCTTCCATAGGAAAC  900

seq1  ATACAGTAATTACTGTTAAGGGGCAGTTACATAAGAATGTCAAAATTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAATTACTGTTAAGGGGCAGTTACATAAGAATGTCAAAATTTTA  950

seq1  CATAATGAAACTAGTATAAGAGAAAATTTATTTTAGGATGCTGTTTTAAG  1000
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CATAATGAAACTAGTAT-AGAGAAAATTTATTTTA-GATGCTGTTTTAAG  998

seq1  GAAAAGCAGACCAGGAGAAAAACAGATTTGCTCCTAGAGCAGCAGAGTTG  1050
      |||||||||||||||| ||||||| | ||||| |||||||||| ||||||
seq2  GAAAAGCAGACCAGGAAAAAAACA-AATTGCTTCTAGAGCAGC-GAGTTG  1046

seq1  CAGATCTTCATCCTG-CTCTCAACAAATGAGTCTCCTGCACTAGATC-CT  1098
      |||||||||||| || |||||||||||||||||||||||||||  || ||
seq2  CAGATCTTCATCTTGCCTCTCAACAAATGAGTCTCCTGCACTAAGTCTCT  1096

seq1  TGGACTACATTACTTACCAAGGCAGCCCATAAAGTATTAATTTAGTCATT  1148
       | |||||  ||| |||||| |||| |||||||||||  | |||||||||
seq2  GGAACTACTATAC-TACCAA-GCAG-CCATAAAGTAT--AATTAGTCATT  1141

seq1  GTTTGTTTTTGATGAGTGCA  1168
      ||| ||||||||||||||||
seq2  GTTGGTTTTTGATGAGTGCA  1161