BAC Information

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BAC

Clone NameB6Ng01-040D14
Chromosome3 (Build37)
Map Location 89,370,963 - 89,486,920
singlet/doubletdoublet
Overlap geneKcnn3
Upstream geneUbqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D14.bB6Ng01-040D14.g
ACCDH867258DH867259
length1,1891,139
definitionDH867258|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D14, 5' end.DH867259|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,485,692 - 89,486,920)(89,370,963 - 89,372,117)
sequence
gaattcaaggttaaatagccagaactgtggacaggtcatcttctttattc
caagactgtagacatgctgaaggaaaattaacataagcaggaaaccagga
agatgacaatttataattaatctagccagcagcactgtagaagcaagggt
tgactgctggagattggctgcattgtgaagtggttcttatgtctcccact
taccttactttgggctaattgagaagaaagacttaagtctcagccatgga
tggaaagacccactaggagggagactaggtctttgggctgcccggcagcc
tggtcaccggtgagccgaggaatccagctgcaggaactgagcagctgcct
ggggctaggatgcttgcagttccctctggagatgccaccccttatgccgc
cttctctgctggtggcaggggcccttcccgccaaggtttccccagtgccc
cgccttcccttttaaatgttctttgaggaactcagatctctgtgaaatta
gatggggagaaaacatttgtcagtcctaacgactttttgattactgggag
gattgtcaggacggatctctggaggctggaaagcctctttaatcagctcg
tgatgtgctagactcctggggcgcagtgtgagccttgccagtggccagct
tgctgagcagcccctgggatgccacagggacttctggcttcccctatcta
tgctgacagctagtagaggcaggtgtggcaggtactagaactagacacac
cagcaaaaccaaaaagaggcaggtgttgagaaagcaagttcgatttagat
ataatatgaataccaacaggcacaagccaggggaccctggagacgtgacc
tcggctgttgcatttaatcttcgtggccatccctctggcaaagagctaag
atagtttttgttttgcaggaaggagactgagtttggagatgatgtcagct
attgcctacccatgtcagttcaagcagatttaacattgttttgactcagt
acacttaaccggagggtgctctccgttgtgccacttctcccggtccctgt
gacagtttcaggactttgcaaatactcaaagtcaaagtctcaggataaac
ctaccctacctcaaagcctgcggttttaagggaaaggtgttgtttgttca
aggcaataacatcagagaatcccggtcagacattctctg
gaattcttaagggtgtgggaatggtaccgggaacagtatggtttctagaa
atggaaaccttactctctttcctgttccacacacagctgtcctctaactt
ctagctgcattttggaatatgccaggtgagccagcctcatggccactagc
actgctgcccagaactgcaagtgtctggctctcctcctgctgtagctagg
ctcggtttccatgacgtagaccctcattgtgctgtacccactgactccca
ggggaagtgacagtgtcttcaccttaacactcgcattctccctacagctg
tctgggctgtctcttgtctccttgaagggaatcggaatggtttagcccca
gagagccagcaagagaggtgttcccatctgcaatcacctggccagactac
agctttctgcatgatggctttctccatcacttcagaaacaaagaaacaca
gatgtcgttaatatttgcatttccaaaaatatacaatgcctgacagagag
atgggatagaaggtactggactaaagaactcttgtttctaaaactagtga
catcatgattttgcgtgtggtcctgagcctcagtttccttgtctaattat
tagggtcctggttttaagttatccagtctaggtgtggctgctcatctttc
agggtcctggttactgagtgtttagtgtgactaacagagagtttccaggg
ggaagcaatggaaatgccatcctcagggcaggtcagccactgctggggtg
agcagggtgggaaggctgtggctgtgccatctcctaaggccacctgccta
gcacagggcctgctgggctctctgagtgctacagtaacggcctggggagg
gtcacctacagtgacagcatgcattttagaacacaccccattctgcagag
aggactttgctctcagccccactcctgtctctggagcatcaaggacagag
ccaggttgccatgtggtcacttctgtgttgagatgctcaccccgcctctc
tcagccttcatctttgtggcatttttagagggagcttggaagatcagtac
ccttttattcccagccgtgtattctgagaagaagaaattgcaaagctatg
catttggaacctcgctaaatgtaacgggaccatacttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89485692_89486920
seq2: B6Ng01-040D14.b_45_1233 (reverse)

seq1  CAGAGAAATTCAAGATGAGTCTGGACCTGGGATCTCTTGATGTTATTTGG  50
      |||||||           |||| |||| ||  |||| ||||||||||   
seq2  CAGAGAA----------TGTCT-GACCGGGATTCTC-TGATGTTATT---  35

seq1  GCCTTAGAAACAAACAAACAAACATCTCCCTAAATAACAGCCAAGCATTT  100
      |||||   ||||||||   | || | ||||| || ||| | || ||  ||
seq2  GCCTT--GAACAAACA---ACACCTTTCCCTTAA-AACCG-CAGGC--TT  76

seq1  TGAGGTAAGTGTAGAGTTTTATCCCTGAGAACTTTGACCTTGAGTATTTT  150
      |||||| || ||  || ||||| |||||| |||||||| ||||||| |||
seq2  TGAGGT-AGGGT--AGGTTTAT-CCTGAG-ACTTTGACTTTGAGTA-TTT  120

seq1  GCAAAGTCCTGGAAACTGGTCACAGGGGACCGGGGAGGAAGTGGCACAAC  200
      |||||||||| |||||| |||||| |||||||||   |||||||||||||
seq2  GCAAAGTCCT-GAAACT-GTCACA-GGGACCGGG--AGAAGTGGCACAAC  165

seq1  GGAAGAGCACCCTCCCGGTTAAGTGTACTGAGTCAAAACAATGTTAAATC  250
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GG-AGAGCACCCT-CCGGTTAAGTGTACTGAGTCAAAACAATGTTAAATC  213

seq1  TGCTTGAACTGACATGGGTAGGCAATAGCTGACATCATCTCCAAACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAACTGACATGGGTAGGCAATAGCTGACATCATCTCCAAACTCAG  263

seq1  TCTCCTTTCCTGCAAAACAAAAACTAATCTTAGCTCTTTTGCCAGAGGGA  350
      ||||| ||||||||||||||||||| |||||||||| |||||||||||||
seq2  TCTCC-TTCCTGCAAAACAAAAACT-ATCTTAGCTC-TTTGCCAGAGGGA  310

seq1  TGGCCACGAAGATTAAATGCAACAGCCGAGGTCACGTCTCCAGGGTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACGAAGATTAAATGCAACAGCCGAGGTCACGTCTCCAGGGTCCCC  360

seq1  TGGCTTGTGCCTGTTGGTATTCATATTATATCTAAATCGAACTTGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGCCTGTTGGTATTCATATTATATCTAAATCGAACTTGCTTTC  410

seq1  TCAACACCTGCCTCTTTTTGGTTTTGCTGGTGTGTCTAGTTCTAGTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCTGCCTCTTTTTGGTTTTGCTGGTGTGTCTAGTTCTAGTACCT  460

seq1  GCCACACCTGCCTCTACTAGCTGTCAGCATAGATAGGGGAAGCCAGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCTGCCTCTACTAGCTGTCAGCATAGATAGGGGAAGCCAGAAGT  510

seq1  CCCTGTGGCATCCCAGGGGCTGCTCAGCAAGCTGGCCACTGGCAAGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGCATCCCAGGGGCTGCTCAGCAAGCTGGCCACTGGCAAGGCTC  560

seq1  ACACTGCGCCCCAGGAGTCTAGCACATCACGAGCTGATTAAAGAGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCGCCCCAGGAGTCTAGCACATCACGAGCTGATTAAAGAGGCTTT  610

seq1  CCAGCCTCCAGAGATCCGTCCTGACAATCCTCCCAGTAATCAAAAAGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCAGAGATCCGTCCTGACAATCCTCCCAGTAATCAAAAAGTCG  660

seq1  TTAGGACTGACAAATGTTTTCTCCCCATCTAATTTCACAGAGATCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTGACAAATGTTTTCTCCCCATCTAATTTCACAGAGATCTGAGT  710

seq1  TCCTCAAAGAACATTTAAAAGGGAAGGCGGGGCACTGGGGAAACCTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGAACATTTAAAAGGGAAGGCGGGGCACTGGGGAAACCTTGGC  760

seq1  GGGAAGGGCCCCTGCCACCAGCAGAGAAGGCGGCATAAGGGGTGGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGCCCCTGCCACCAGCAGAGAAGGCGGCATAAGGGGTGGCATCT  810

seq1  CCAGAGGGAACTGCAAGCATCCTAGCCCCAGGCAGCTGCTCAGTTCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGAACTGCAAGCATCCTAGCCCCAGGCAGCTGCTCAGTTCCTGC  860

seq1  AGCTGGATTCCTCGGCTCACCGGTGACCAGGCTGCCGGGCAGCCCAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTCCTCGGCTCACCGGTGACCAGGCTGCCGGGCAGCCCAAAGA  910

seq1  CCTAGTCTCCCTCCTAGTGGGTCTTTCCATCCATGGCTGAGACTTAAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTCCCTCCTAGTGGGTCTTTCCATCCATGGCTGAGACTTAAGTC  960

seq1  TTTCTTCTCAATTAGCCCAAAGTAAGGTAAGTGGGAGACATAAGAACCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCAATTAGCCCAAAGTAAGGTAAGTGGGAGACATAAGAACCAC  1010

seq1  TTCACAATGCAGCCAATCTCCAGCAGTCAACCCTTGCTTCTACAGTGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGCAGCCAATCTCCAGCAGTCAACCCTTGCTTCTACAGTGCTG  1060

seq1  CTGGCTAGATTAATTATAAATTGTCATCTTCCTGGTTTCCTGCTTATGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGATTAATTATAAATTGTCATCTTCCTGGTTTCCTGCTTATGTT  1110

seq1  AATTTTCCTTCAGCATGTCTACAGTCTTGGAATAAAGAAGATGACCTGTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTTCAGCATGTCTACAGTCTTGGAATAAAGAAGATGACCTGTC  1160

seq1  CACAGTTCTGGCTATTTAACCTTGAATTC  1229
      |||||||||||||||||||||||||||||
seq2  CACAGTTCTGGCTATTTAACCTTGAATTC  1189

seq1: chr3_89370963_89372117
seq2: B6Ng01-040D14.g_69_1207

seq1  GAATTCTTAAGGGTGTGGGAATGGTACCGGGAACAGTATGGTTTCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGGTGTGGGAATGGTACCGGGAACAGTATGGTTTCTAGAA  50

seq1  ATGGAAACCTTACTCTCTTTCCTGTTCCACACACAGCTGTCCTCTAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACCTTACTCTCTTTCCTGTTCCACACACAGCTGTCCTCTAACTT  100

seq1  CTAGCTGCATTTTGGAATATGCCAGGTGAGCCAGCCTCATGGCCACTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATTTTGGAATATGCCAGGTGAGCCAGCCTCATGGCCACTAGC  150

seq1  ACTGCTGCCCAGAACTGCAAGTGTCTGGCTCTCCTCCTGCTGTAGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCCAGAACTGCAAGTGTCTGGCTCTCCTCCTGCTGTAGCTAGG  200

seq1  CTCGGTTTCCATGACGTAGACCCTCATTGTGCTGTACCCACTGACTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTTTCCATGACGTAGACCCTCATTGTGCTGTACCCACTGACTCCCA  250

seq1  GGGGAAGTGACAGTGTCTTCACCTTAACACTCGCATTCTCCCTACAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGACAGTGTCTTCACCTTAACACTCGCATTCTCCCTACAGCTG  300

seq1  TCTGGGCTGTCTCTTGTCTCCTTGAAGGGAATCGGAATGGTTTAGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTGTCTCTTGTCTCCTTGAAGGGAATCGGAATGGTTTAGCCCCA  350

seq1  GAGAGCCAGCAAGAGAGGTGTTCCCATCTGCAATCACCTGGCCAGACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCAGCAAGAGAGGTGTTCCCATCTGCAATCACCTGGCCAGACTAC  400

seq1  AGCTTTCTGCATGATGGCTTTCTCCATCACTTCAGAAACAAAGAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGCATGATGGCTTTCTCCATCACTTCAGAAACAAAGAAACACA  450

seq1  GATGTCGTTAATATTTGCATTTCCAAAAATATACAATGCCTGACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCGTTAATATTTGCATTTCCAAAAATATACAATGCCTGACAGAGAG  500

seq1  ATGGGATAGAAGGTACTGGACTAAAGAACTCTTGTTTCTAAAACTAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGAAGGTACTGGACTAAAGAACTCTTGTTTCTAAAACTAGTGA  550

seq1  CATCATGATTTTGCGTGTGGTCCTGAGCCTCAGTTTCCTTGTCTAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATTTTGCGTGTGGTCCTGAGCCTCAGTTTCCTTGTCTAATTAT  600

seq1  TAGGGTCCTGGTTTTAAGTTATCCAGTCTAGGTGTGGCTGCTCATCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCCTGGTTTTAAGTTATCCAGTCTAGGTGTGGCTGCTCATCTTTC  650

seq1  AGGGTCCTGGTTACTGAGTGTTTAGTGTGACTAACAGAGAGTTTCCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTGGTTACTGAGTGTTTAGTGTGACTAACAGAGAGTTTCCAGGG  700

seq1  GGAAGCAATGGAAATGCCATCCTCAGGGCAGGTCAGCCACTGCTGGGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAATGGAAATGCCATCCTCAGGGCAGGTCAGCCACTGCTGGGGTG  750

seq1  AGCAGGGTGGGAAGGCTGTGGCTGTGCCATCTCCTAAGGCCACCTGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTGGGAAGGCTGTGGCTGTGCCATCTCCTAAGGCCACCTGCCTA  800

seq1  GCACAGGGCCTGCTGGGCTCTCTGAGTGCTACAGTAACGGCCTGGGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGCCTGCTGGGCTCTCTGAGTGCTACAGTAACGGCCTGGGGAGG  850

seq1  GTCACCTACCAGTGACAGCATGCA-TTTAGAACACACCCCATTCTGCAGA  899
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GTCACCTA-CAGTGACAGCATGCATTTTAGAACACACCCCATTCTGCAGA  899

seq1  GAGGAACTTGCTCTCAGCCCCACTCCTGTCTCTGGAGCATCAAGGACAGA  949
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTTGCTCTCAGCCCCACTCCTGTCTCTGGAGCATCAAGGACAGA  949

seq1  GCCAGGTTGCCATGTGGTCACTTCTGTTGTTGAAGATGCTCACCCCGCCT  999
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GCCAGGTTGCCATGTGGTCACTTCTG-TGTTG-AGATGCTCACCCCGCCT  997

seq1  CTCCTCAGCCTTCATCTTTTGTGGCATTTTTAGAGTGGAGCTTTGAAAGA  1049
      || ||||||||||||| |||||||||||||||||| ||||| ||| ||||
seq2  CT-CTCAGCCTTCATC-TTTGTGGCATTTTTAGAG-GGAGC-TTGGAAGA  1043

seq1  TTCAGGTACCTTTTATCCCCAGGCCAGTGTATTCTGAGAAGAAAGGAAAA  1099
       ||||   |||||||| |||||  | |||||||||||||||||  |||| 
seq2  -TCAGTACCCTTTTATTCCCAG--CCGTGTATTCTGAGAAGAA--GAAAT  1088

seq1  TGCAAAAGCTATGCAATTTGGACCTTCGCTAAAATGTAGCGGGAACCCAT  1149
      ||| |||||||||| ||||||| | ||||| ||||||| |||||  ||||
seq2  TGC-AAAGCTATGC-ATTTGGAACCTCGCT-AAATGTAACGGGA--CCAT  1133

seq1  ACTTGT  1155
      ||||||
seq2  ACTTGT  1139