BAC Information

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BAC

Clone NameB6Ng01-040E17
Chromosome8 (Build37)3 (Build37)
Map Location 66,366,163 - 66,367,074101,786,389 - 101,786,781
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpock3, LOC384831
Downstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E17.bB6Ng01-040E17.g
ACCDH867309DH867310
length912893
definitionDH867309|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E17, 5' end.DH867310|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,366,163 - 66,367,074)(101,786,389 - 101,786,781)
sequence
gaattccagggctgtagagtgggtacacagatcgttaaagggacagagaa
ggaatatatcactctccagttaaaccattcagatgcagaaagtggaaaag
ccaacacagcagataaagtgagaatgtggttccttataatgcatatgttt
gtatatgtgcatgcacatatgtatacgtacatatagtggttagctacaat
atattacatgcattgtatatataatatgttgcagttgtgctgatgaaatt
aaatacacaagcacatttaataggtctaaatcacatatacagtataagag
cataactttgaatttctatcatatccataccaacttaaaataagagacta
gttgctttattattcaaaaagagatacattcataaatggagagctcatta
gaactcagaggatttataattgttgctttataacttgtggtcatctttgg
atggttaaattgtattgcagattgcaagccatgtggccacttacagcctg
gaaaggtcaccagacaagatgaaggagaggcacatggttgctgttttaaa
acatttgtttttctatagatatatttacatattttaaatgagacttatat
tcaagttacacacacaccctaaacaagaccagaatcatatataaatacat
atatattataggttatatgtcaacatgtcacataacacatgtcacacatt
atgtcttatacattatatgttatatgttatatactatacactacatgtta
tacattatatattatgtattaattatatatcatacatcatatatcacaca
acatatatcacacatcatatatcacacatcatatatcacatatataatag
atattatgtgttatgtgttaagcattgtgttatgtgttatgtgatattta
ttatataattta
gaattcattttggtattggccaactactgctgagctgggaatgagaccag
gagttaggaatggtttgtaaacccagtgagagttcactggagaaagcaac
attttcttttctgagtaattgttaattagagataacttctgggttaggga
tgaaggcttgtttctgtacctccattgccgggaccccatgtggcccagac
acgtgcaggctctgtgcatgctgccatagtctctgtgactttacttgtac
ataggtcttgttcagaaggcctggtttccttactgtcctccattccctgt
ggctcttccaatattcttcctcctcctcctcaggattctcttgagctaaa
aggaagggatttgatggagacatcgtgctgaatatagaatgttccaatgc
ctctcactctctgtacattgtctagctgtgggtctctatttgttctcatt
tactgcaaaaggaactgtctctgaaaatggctgagcaagatgctgtccta
tgaatataacctgaatgatttctatttaacttgcttccctttcagtgatt
atttcttcatttcttactgattgactgaaaagattgttaagcactgtttg
attgttttgcttttttttttttttttttttggtattcatacttaactcat
ggctatagtgtttcacttctgttaatctcttatgttgccataacaaaata
tcttagatgagataacttagataataaaaattagtgcaatttccttacag
ttatgaagattgaaagccccatgtcaaattgcctactctgtgggtgtctg
gttggcttgtctttttggcctcttaaatgtttaccattttggtgtgtcct
cacagagatgtgtgtgtgtgtgtgtgtgtgttagtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66366163_66367074
seq2: B6Ng01-040E17.b_46_957

seq1  GAATTCCAGGGCTGTAGAGTGGGTACACAGATCGTTAAAGGGACAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTGTAGAGTGGGTACACAGATCGTTAAAGGGACAGAGAA  50

seq1  GGAATATATCACTCTCCAGTTAAACCATTCAGATGCAGAAAGTGGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATCACTCTCCAGTTAAACCATTCAGATGCAGAAAGTGGAAAAG  100

seq1  CCAACACAGCAGATAAAGTGAGAATGTGGTTCCTTATAATGCATATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACAGCAGATAAAGTGAGAATGTGGTTCCTTATAATGCATATGTTT  150

seq1  GTATATGTGCATGCACATATGTATACGTACATATAGTGGTTAGCTACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTGCATGCACATATGTATACGTACATATAGTGGTTAGCTACAAT  200

seq1  ATATTACATGCATTGTATATATAATATGTTGCAGTTGTGCTGATGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACATGCATTGTATATATAATATGTTGCAGTTGTGCTGATGAAATT  250

seq1  AAATACACAAGCACATTTAATAGGTCTAAATCACATATACAGTATAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACAAGCACATTTAATAGGTCTAAATCACATATACAGTATAAGAG  300

seq1  CATAACTTTGAATTTCTATCATATCCATACCAACTTAAAATAAGAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTTGAATTTCTATCATATCCATACCAACTTAAAATAAGAGACTA  350

seq1  GTTGCTTTATTATTCAAAAAGAGATACATTCATAAATGGAGAGCTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTATTATTCAAAAAGAGATACATTCATAAATGGAGAGCTCATTA  400

seq1  GAACTCAGAGGATTTATAATTGTTGCTTTATAACTTGTGGTCATCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGGATTTATAATTGTTGCTTTATAACTTGTGGTCATCTTTGG  450

seq1  ATGGTTAAATTGTATTGCAGATTGCAAGCCATGTGGCCACTTACAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAAATTGTATTGCAGATTGCAAGCCATGTGGCCACTTACAGCCTG  500

seq1  GAAAGGTCACCAGACAAGATGAAGGAGAGGCACATGGTTGCTGTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCACCAGACAAGATGAAGGAGAGGCACATGGTTGCTGTTTTAAA  550

seq1  ACATTTGTTTTTCTATAGATATATTTACATATTTTAAATGAGACTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTTTTCTATAGATATATTTACATATTTTAAATGAGACTTATAT  600

seq1  TCAAGTTACACACACACCCTAAACAAGACCAGAATCATATATAAATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTACACACACACCCTAAACAAGACCAGAATCATATATAAATACAT  650

seq1  ATATATTATAGGTTATATGTCAACATGTCACATAACACATGTCACACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATAGGTTATATGTCAACATGTCACATAACACATGTCACACATT  700

seq1  ATGTCTTATACATTATATGTTATATGTTATATACTATACACTACATGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTATACATTATATGTTATATGTTATATACTATACACTACATGTTA  750

seq1  TACATTATATATTATGTATTAATTATATATCATACATCATATATCACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATATATTATGTATTAATTATATATCATACATCATATATCACACA  800

seq1  ACATATATCACACATCATATATCACACATCATATATCACATATATAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATCACACATCATATATCACACATCATATATCACATATATAATAG  850

seq1  ATATTATGTGTTATGTGTTAAGCATTGTGTTATGTGTTATGTGATATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGTGTTATGTGTTAAGCATTGTGTTATGTGTTATGTGATATTTA  900

seq1  TTATATAATTTA  912
      ||||||||||||
seq2  TTATATAATTTA  912

seq1: chr3_101786389_101786781
seq2: B6Ng01-040E17.g_609_961 (reverse)

seq1  ACACACACACGTGCGCGCGCGTGCGCACGCGCACACACACACACACACAC  50
      |||||||||                    |  ||||||||||||||||||
seq2  ACACACACA--------------------CTAACACACACACACACACAC  30

seq1  ACACATGCACGCACGCGCACACGCACACACACACACACACACACATGCGC  100
      ||||||       | |    | | |||||| || |     | ||||    
seq2  ACACAT-------CTCTGTGA-GGACACAC-CAAAATGGTAAACAT----  67

seq1  GCACACACACCGCACACACATGCGCGCGCGCACACACACACACAAATTGC  150
          | |  ||  | | ||| ||   |   || |||| |||| |    ||
seq2  -TTAAGAGGCCAAAAAGACAAGC---CAACCAGACACCCACAGAGTAGGC  113

seq1  AGT-----ATTGG---TTAAACCATGAGAA----AAAGCAAT--CAGTAC  186
      | |     || ||   || || | | | ||    || | |||  || || 
seq2  AATTTGACATGGGGCTTTCAATCTTCATAACTGTAAGGAAATTGCACTAA  163

seq1  ACTTCATGCAACT--GTT-GCTGA-CTAAAGGAAGTGCATGTCCCCAGCT  232
        || ||  | ||  |||  || | ||||   |  |   | |  | |  |
seq2  TTTTTAT-TATCTAAGTTATCTCATCTAAGATATTTTGTTATGGCAACAT  212

seq1  CAGGGA-----AG-CTAGCAACACTGTAGCAATG-GTTTCATCTCCATCC  275
       || ||     ||    | |||||| |||| ||| |||   | |  || |
seq2  AAGAGATTAACAGAAGTGAAACACTATAGCCATGAGTTAAGTATGAATAC  262

seq1  CAAGATTAAAGCTCTCAGCAAACTGGCAAACTAGGAATAGACTGAAACCT  325
      ||| |  |||         |||     |||  || || | | | |||   
seq2  CAAAAAAAAA---------AAA---AAAAAAAAGCAAAACAATCAAA---  297

seq1  CCTCAGTCTGATGAGCAGCATTTGTTTAAAAAAAAAAAAAAAAGCCAGTA  375
         |||  || | | ||  || | || |   ||  |  || ||      |
seq2  ---CAG--TGCTTAACA--ATCTTTTCAGTCAATCAGTAAGAA------A  334

seq1  TCTAG-CATAATCACTGAA  393
      |  ||  ||||||||||||
seq2  TGAAGAAATAATCACTGAA  353