BAC Information

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BAC

Clone NameB6Ng01-040F14
Chromosome3 (Build37)
Map Location 143,565,737 - 143,691,322
singlet/doubletdoublet
Overlap geneLOC100039938
Upstream geneLOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F14.bB6Ng01-040F14.g
ACCDH867347DH867348
length1,0461,029
definitionDH867347|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F14, 5' end.DH867348|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,565,737 - 143,566,791)(143,690,286 - 143,691,322)
sequence
gaattctccactatgctgggagggctgggtggctagaaagatccacaaag
atccatctctctctgcatctctactgctgggaacacaaggacatgtcatt
gtatccagactgcttttgtgggttctggggatcaaactgaggtaggcagg
cttgcacaacaagccctttactgggtagatgaaccatttccccagccacc
ctcctcttcctgtcctcttcctcctcttctcatttccttctactccttcc
ctccttcttctccccccctccttttccttctcccctccttctcttcctcc
cttccttctccttttcttcttcttcttcttcgtctccatctctgtctcct
tctccttctcctcctcctcttctccttctccctgccttctccttttcttc
atcttcttctttcctcctcctcttcttcttccactcctccattccccttc
tttttcttgtctttttttttccttttcccccaaagttagtcatagaccta
gaaactcagagttggtctggagcaggtatagtctttttagaggcctgtct
cagtgaacatgtgtcctggatgagacaatgtgtaatactcaatgctcaga
aaacaagtcttcttgggcacatcaacccataaagtgcattgtgctgagag
ttaccacaaaaaaacaaacaaacaaacaaacaaaaccatcatgcttcaat
gtccttcatgccactttgcataggtgtgtcttagagacacacaaatatgt
aatggaaaaaaccgagttcaatgcaggaagtggggaaagcagatgggtat
gatataactacttcttcatcttgccacacctcaagtctcattagagaata
accgatgctgacagccagcttttcagagcatgtccacatgcgccatctac
gtttacccaactaattgtatgcatcactcctcttactaacatcctcatcg
tacagaatatcagagaggcttaaattcatgcactagaggccattgaatat
cagaagagtactggaatcagattctctacccaaatcctaagtctct
gaattcttgccctctttaggtttcactgaaaggaaccgtgaggtttggac
tctccctttaggatttgttttcccaaactatgaagtctcttacctaaaag
actgaaaccccagttggcttatctgcccaggagatgagaagatgaagcaa
gttcagcaactagccagagtagtcgcagccattcctgtaccttagtgtac
acagggacctgcttttcaattgtgtaattggcatggcttaaaatggtaca
agcttgaatactttacaatagttatctttgtgagggctaagtttgcgtat
tcttacctgacttaaccatgatcccttgttattccctaaccattttcttt
aaataaaaatgtaaacttttatttcaaacaagataattttagatggggtg
ctgtgtgagttcccaggctctggagataccccctgtgtattgttgactca
caaatcgaaacacaggcctgtgacttgggtttcacatcccactgatcaac
gtacttgggcatcctacaaaccttttcagatcagtatagactgtttgtgt
ttccgctctaaaatttgttgacttcctgtctattccagatcataactagc
atcatctctacaaagactgatctggcctgaacttgcagctaaccttctca
gtgctgaggtgataggtgggtattcacacaccttacatcaacatcatctt
tcatcaggaacactgaaggccttctagagggcctgacatatgaaccattt
ctggaatggagggtccctctagcccaaagctcatgttttattagtcatac
tgaaaagagaacagaaacaaaccagcctgtggtaatgagtttgattctgg
ttcacaaaccaccatttttcaaagaccctcactagaaggctgggtcttta
gaatcagatttcgaggacttgtcgagtatgtcccacccttgccaggaaga
gaatgttcccgcaagctaaaggaggagtcatgctggtggatggtcacgca
aagggtgacttgaggtgttgacgtttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143565737_143566791
seq2: B6Ng01-040F14.b_43_1088

seq1  GAATTCTCCAACTATGCTGGGAGGGCTGGGTGGCTAGCAAGATCCACAAA  50
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCTCC-ACTATGCTGGGAGGGCTGGGTGGCTAGAAAGATCCACAAA  49

seq1  GATCCATCTCTCTCTACATCTCTACTGCTGGGAACACAAGGACATGTCAT  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATCCATCTCTCTCTGCATCTCTACTGCTGGGAACACAAGGACATGTCAT  99

seq1  TGTATCCAGACTGCTTTTGTGGGTTCTGGGGATCAAACTCAGGTATTCAG  150
      ||||||||||||||||||||||||||||||||||||||| |||||  |||
seq2  TGTATCCAGACTGCTTTTGTGGGTTCTGGGGATCAAACTGAGGTAGGCAG  149

seq1  GCTTGCACAACAAGCCCTTTACTGGGTAGATGAACCATTTCCCCAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACAACAAGCCCTTTACTGGGTAGATGAACCATTTCCCCAGCCAC  199

seq1  CCTCCTCTTCCTGTCCTCTTCCTCCTCTTCTCATTTCCTTCTACTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCCTGTCCTCTTCCTCCTCTTCTCATTTCCTTCTACTCCTTC  249

seq1  CCTCCTTCTTCTCCCCCCCTCCTTTTCCTTCTCCCCTCCTTCTCTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTTCTCCCCCCCTCCTTTTCCTTCTCCCCTCCTTCTCTTCCTC  299

seq1  CCTTCCTTCTCCTTTTCTTCTTCTTCTTCTTCGTCTCCATCTCTGTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTCCTTTTCTTCTTCTTCTTCTTCGTCTCCATCTCTGTCTCC  349

seq1  TTCTCCTTCTCCTCCTCCTCTTCTCCTTCTCCCTGCCTTCTCCTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCTCCTCCTCCTCTTCTCCTTCTCCCTGCCTTCTCCTTTTCTT  399

seq1  CATCTTCTTCTTTCCTCCTCCTCTTCTTCTTCCACTCCTCCATTCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTCTTTCCTCCTCCTCTTCTTCTTCCACTCCTCCATTCCCCTT  449

seq1  CTTTTTCTTGTCTTTTTTTTTCCTTTTCCCCCAAAGTTAGTCATAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGTCTTTTTTTTTCCTTTTCCCCCAAAGTTAGTCATAGACCT  499

seq1  AGAAACTCAGAGTTGGTCTGGAGCAGGTATAGTCTTTTTAGAGGCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCAGAGTTGGTCTGGAGCAGGTATAGTCTTTTTAGAGGCCTGTC  549

seq1  TCAGTGAACATGTGTCCTGGATGAGACAATGTGTAATACTCAATGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAACATGTGTCCTGGATGAGACAATGTGTAATACTCAATGCTCAG  599

seq1  AAAACAAGTCTTCTTGGGCACATCAACCCATAAAGTGCATTGTGCTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTCTTCTTGGGCACATCAACCCATAAAGTGCATTGTGCTGAGA  649

seq1  GTTACCACAAAAAAACAAACAAACAAACAAACAAAACCATCATGCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCACAAAAAAACAAACAAACAAACAAACAAAACCATCATGCTTCAA  699

seq1  TGTCCTTCATGCCACTTTGCATAGGTGTTTCTTAGAGACACACAAATATG  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCCTTCATGCCACTTTGCATAGGTGTGTCTTAGAGACACACAAATATG  749

seq1  TAATGG-AAAAACCGAGTTCAATGCAGGAAGT-GGGAAAGCAGATGGGTA  798
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TAATGGAAAAAACCGAGTTCAATGCAGGAAGTGGGGAAAGCAGATGGGTA  799

seq1  TGATATAACTACTTCTTCATCTTGCCACACCCCAAGTCTCATCAGAGAAT  848
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TGATATAACTACTTCTTCATCTTGCCACACCTCAAGTCTCATTAGAGAAT  849

seq1  AACCAATGCTGACAGCCAGCTTTTCAGAGCATGTCCACATGCTCCATCTA  898
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCGATGCTGACAGCCAGCTTTTCAGAGCATGTCCACATGCGCCATCTA  899

seq1  CTTTTACCCAACTAATTGTATTACATCACTCCTCTTACTAACATCCTCAT  948
      | |||||||||||||||||| | |||||||||||||||||||||||||||
seq2  CGTTTACCCAACTAATTGTA-TGCATCACTCCTCTTACTAACATCCTCAT  948

seq1  CGTACAGAATATCAGAGAGGCTTAAAATTCATGCACCAAGAGAGCCAATT  998
      ||||||||||||||||||||||| ||||||||||||    |||| | |||
seq2  CGTACAGAATATCAGAGAGGCTT-AAATTCATGCAC---TAGAGGCCATT  994

seq1  GAATATCAGGAAGAGTACTGGAATCCAGATTCTCCTACCCCAAATCCTAA  1048
      |||||||| ||||||||||||||| |||||||| ||| ||||||||||||
seq2  GAATATCA-GAAGAGTACTGGAAT-CAGATTCT-CTA-CCCAAATCCTAA  1040

seq1  GCTCTCT  1055
      | |||||
seq2  G-TCTCT  1046

seq1: chr3_143690286_143691322
seq2: B6Ng01-040F14.g_71_1099 (reverse)

seq1  TACAAAGGTCAACACCCTCAAGTCACCCATTTGCGTGACCACTCCA-CAG  49
      |||||| ||||||| ||||||||||||| |||||||||||| |||| |||
seq2  TACAAACGTCAACA-CCTCAAGTCACCC-TTTGCGTGACCA-TCCACCAG  47

seq1  CATGACTCCTCCCTTATGCTTGCGTGAACCTTTCTCTTCCTGGCAAGGGT  99
      |||||||||||| ||| ||||||| ||| | |||||||||||||||||||
seq2  CATGACTCCTCCTTTA-GCTTGCGGGAA-CATTCTCTTCCTGGCAAGGGT  95

seq1  GGGACACTACTCAGACATGTCCTCGGAATCTGATTCCTAAAGAACCAGCC  149
      |||||| ||||| |||| ||||||| ||||||||| ||||||| ||||||
seq2  GGGACA-TACTC-GACAAGTCCTCGAAATCTGATT-CTAAAGACCCAGCC  142

seq1  TTCTAGTGAGGGTCTTTGAAAAATGGTGGTTTGTGAACCAGAATCAAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGAGGGTCTTTGAAAAATGGTGGTTTGTGAACCAGAATCAAACT  192

seq1  CATAACCACAGGCTGGTTTGTTTCTGTTCTTCTTTTCAGTATGACTAAT-  248
      ||| ||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CATTACCACAGGCTGGTTTGTTTCTGTTC-TCTTTTCAGTATGACTAATA  241

seq1  AAACCTGAGCTTTGGGCTAGAGGGACCCTCCATTCCAGAAATGGTTCATA  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGCTTTGGGCTAGAGGGACCCTCCATTCCAGAAATGGTTCATA  291

seq1  TGTCAGGCCTTCTAGAAGGCCTTCAGTGTTCCTGATGAAAGATGATGTTG  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCCCTCTAGAAGGCCTTCAGTGTTCCTGATGAAAGATGATGTTG  341

seq1  ATGTAAGGTGTGTGAATACCCACCTATCACCTCAGCACTGAGAAGGTTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGTGTGTGAATACCCACCTATCACCTCAGCACTGAGAAGGTTAG  391

seq1  CTGCAAGTTCTAGGCCAGATCAGTCTTTGTAGAGATGATGCTAGTTCTGA  448
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CTGCAAGTTC-AGGCCAGATCAGTCTTTGTAGAGATGATGCTAGTTATGA  440

seq1  TCTGGACTAGACAGGAAGTCAACAAATCTCAGAGCGGAAACACAAACAGA  498
      |||||| |||||||||||||||||||| | ||||||||||||||||||| 
seq2  TCTGGAATAGACAGGAAGTCAACAAATTTTAGAGCGGAAACACAAACAGT  490

seq1  CTATACTGAACTGAAAAGGTTTGTAGGATGCCCAAGTACGTTGATCAGTG  548
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGATCTGAAAAGGTTTGTAGGATGCCCAAGTACGTTGATCAGTG  540

seq1  GGATGTGAAACCCAAGTCACAGGACTGTGTTTCGATTTGTGAGTCAACAA  598
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGATGTGAAACCCAAGTCACAGGCCTGTGTTTCGATTTGTGAGTCAACAA  590

seq1  TACACAGGGGGTATCTCCAGAGCCTGGGAACTCACACAGCACCCCATCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGGGGTATCTCCAGAGCCTGGGAACTCACACAGCACCCCATCTA  640

seq1  AAATTATCTTGTTTGAAATAAAAGTTTACATTTTTATCTAAAGAAAATGG  698
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATTATCTTGTTTGAAATAAAAGTTTACATTTTTATTTAAAGAAAATGG  690

seq1  TTAGGGAATAACAAGGGAACATTGTTAAGCCAGGTAAGAATACGCAAACT  748
      |||||||||||||||||| ||| |||||| ||||||||||||||||||||
seq2  TTAGGGAATAACAAGGGATCATGGTTAAGTCAGGTAAGAATACGCAAACT  740

seq1  TAGCCCTCACAAAGATAACTATTGTAAAGTATTCAAGCTTGTACCATTCT  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGCCCTCACAAAGATAACTATTGTAAAGTATTCAAGCTTGTACCATTTT  790

seq1  AAGCCATGCCAATTACACAATTGAAAAGCAGGTCCCTGTGTACACTAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCCAATTACACAATTGAAAAGCAGGTCCCTGTGTACACTAAGG  840

seq1  TACAGGAATGGCTGCGACTACTCTGGCTAGTTGCTGAACTTGCCTCATCT  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACAGGAATGGCTGCGACTACTCTGGCTAGTTGCTGAACTTGCTTCATCT  890

seq1  TCTCATCTCCTCTGCAGATAAGCCAACTGGGGTTTCAGTCTCTTAGGTAA  948
      |||||||||||  |||||||||||||||||||||||||||| ||||||||
seq2  TCTCATCTCCTGGGCAGATAAGCCAACTGGGGTTTCAGTCTTTTAGGTAA  940

seq1  GAGACTTCATAGTTTGGGAAAACAAATCCTAAAGGGTGAGTCCAAACCTC  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGACTTCATAGTTTGGGAAAACAAATCCTAAAGGGAGAGTCCAAACCTC  990

seq1  ACGGTTCCTTTCAGTGAAACCTAAAGGGGGCAAGAATTC  1037
      |||||||||||||||||||||||||| ||||||||||||
seq2  ACGGTTCCTTTCAGTGAAACCTAAAGAGGGCAAGAATTC  1029