BAC Information

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BAC

Clone NameB6Ng01-040G04
Chromosome3 (Build37)
Map Location 157,587,897 - 157,733,474
singlet/doubletdoublet
Overlap geneCth, Ankrd13c, Sfrs11, Lrrc40
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684
Downstream geneLrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040G04.bB6Ng01-040G04.g
ACCDH867373DH867374
length1,0351,134
definitionDH867373|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G04, 5' end.DH867374|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,587,897 - 157,588,940)(157,732,323 - 157,733,474)
sequence
gaattccattgctcaggctcttgtcccacgtggatggcctgagtggcgaa
atgctggaaactaggcaggaagccgctcaaagaggcgtccttctgcatgc
tggggcaggagtgcgaggtgttgctttggctaaaaccttctggactttgg
cgcttatatccagggtggggaggggccgacgcaaccaatcatcgctggtc
cctaggcagcggccctgcttattggtcggcagtggaggtgttgccccgat
cgttcctgccccgcctcccagtggcacagagcagtgcccacgtgggacac
ctcagcactgaggtgcagcactcagcccagagatcccctttgtctgcagg
atagggacgcaacctccagcagcctcgcgtggccccagagttccggcaag
ggtcacgcaggcaggtgcttccctcggatctgaggaccgccacagctgtg
ccaccagcgcccgcgtctctactctggccaagatcaggccttaaggccca
agctttgctcccaaaaagacgtagctttgacctaattttacaccttgtcc
gagaactggggaatttaaggagtttctgtacctgggaagtcgaacctaaa
actttgtttttttttttgttttttttttttaagatttatttatatttact
tattattatatgtaagtacactgtagctgtcttcagacacaccagaagag
ggagtcagatctcgttacggatggttgtgagccaccatgtggttgccggg
atttgaactcaggaccttcagaagagcagtcgggtgctcttacctgttga
gccatctcaccagcccgaacctaaactttgaaacactgttgaacgaattt
ggaaggtgttaaggaataaacaactgattttaaaagctactgtttggaaa
agctacgaagagcaaacacatcagtatgcttttcaattagctccagacac
aatcacttccagaaccagtgtacactgccgatgcacagggagccgggtag
cttgaaacactaacgggtaccatgcttgcctgata
gaattctcttgctaatacgttttatctcttatattgatttcccatcctat
ccccaagcaaagctctcacagaaaaacatgcagaggcctttgaggcagct
acagcttcaaggatttaacctttggcttcccatggcttcccgttccaagt
gttaaaaatatgaatgcatctatcagggatgtacagaagacaactttcaa
tttctatcagaaacacccagtgtatctgaggaaatacacatgtcctaaaa
tgagcctcaagtcagggtctaatggcaagatgagaggcacttaagcagat
ttcctcccagtaagtaaatggcaaagaggccaagcaagctctaagttctt
gaaagaagcagcaaagactcaggtggaaagcaaatgacatggctacttgt
atgggggaagcggcacttcagttcagacagtttgtgatcaagtatgaaaa
agcaagcaactgcatcaggcttgatgatgtatgcctatgattccagcaat
ggaaggtcaaaggcaggaggattacaagtttgaggccagtctgggctaca
tgggaagatcttgcaaggactaggattcaaggtgctaggttcaattccta
ggacctaaaaggcctactaaagcctttagaaatgctttagaaatagaatg
tagggataaagggaagaggactatgcagaaagcccaaccccaagattaaa
tgtttgttttaaactttaggttccatcatggcttggcattggcagctcct
tctactgcttcagtatccagaagcaacaggtctactgtcagaaattgaac
agactgacccaaatatgtgtaggattttttttttaaagaaaaactgatga
attcaggggaatgaaatagatattaaataaaatgtggttatcttaagtat
agttaggaaaaacgatcaaatgtaattgatctcttgcttagtctaataag
acacttaagcactaagctgctgtattgtataaatgtattttggctgtcat
aggttattttcctatatagagttattaaacctttattgcacctcaggttt
tggtgtcttttagacacaccatttttcttgctagtttgtttggccagctg
agtttgaggggatatgcctggcatgcagtagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157587897_157588940
seq2: B6Ng01-040G04.b_47_1080

seq1  GAATTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTGAGTGGCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTGAGTGGCGAA  50

seq1  ATGCTGGAAACTAGGCAGGAAGCCGCTCAAAGAGGCGTCCTTCTGCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAAACTAGGCAGGAAGCCGCTCAAAGAGGCGTCCTTCTGCATGC  100

seq1  TGGGGCAGGAGTGCGAGGTGTTGCTTTGGCTAAAACCTTCTGGACTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGGAGTGCGAGGTGTTGCTTTGGCTAAAACCTTCTGGACTTTGG  150

seq1  CGCTTATATCCAGGGTGGGGAGGGGCCGACGCAACCAATCATCGCTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATATCCAGGGTGGGGAGGGGCCGACGCAACCAATCATCGCTGGTC  200

seq1  CCTAGGCAGCGGCCCTGCTTATTGGTCGGCAGTGGAGGTGTTGCCCCGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCAGCGGCCCTGCTTATTGGTCGGCAGTGGAGGTGTTGCCCCGAT  250

seq1  CGTTCCTGCCCCGCCTCCCAGTGGCACAGAGCAGTGCCCACGTGGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTGCCCCGCCTCCCAGTGGCACAGAGCAGTGCCCACGTGGGACAC  300

seq1  CTCAGCACTGAGGTGCAGCACTCAGCCCAGAGATCCCCTTTGTCTGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACTGAGGTGCAGCACTCAGCCCAGAGATCCCCTTTGTCTGCAGG  350

seq1  ATAGGGACGCAACCTCCAGCAGCCTCGCGTGGCCCCAGAGTTCCGGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGACGCAACCTCCAGCAGCCTCGCGTGGCCCCAGAGTTCCGGCAAG  400

seq1  GGTCACGCAGGCAGGTGCTTCCCTCGGATCTGAGGACCGCCACAGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACGCAGGCAGGTGCTTCCCTCGGATCTGAGGACCGCCACAGCTGTG  450

seq1  CCACCAGCGCCCGCGTCTCTACTCTGGCCAAGATCAGGCCTTAAGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCGCCCGCGTCTCTACTCTGGCCAAGATCAGGCCTTAAGGCCCA  500

seq1  AGCTTTGCTCCCAAAAAGACGTAGCTTTGACCTAATTTTACACCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCTCCCAAAAAGACGTAGCTTTGACCTAATTTTACACCTTGTCC  550

seq1  GAGAACTGGGGAATTTAAGGAGTTTCTGTACCTGGGAAGTCGAACCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGGGAATTTAAGGAGTTTCTGTACCTGGGAAGTCGAACCTAAA  600

seq1  ACTTTGTTTTTTTTTTTGTTTTTTTTTTTTAAGATTTATTTATATTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTTTTTTTTTGTTTTTTTTTTTTAAGATTTATTTATATTTACT  650

seq1  TATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAG  700

seq1  GGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCCGGG  750

seq1  ATTTGAACTCAGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCTGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCAGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCTGTTGA  800

seq1  GCCATCTCACCAGCCCGAACCTAAAACTTTGAAACACTGTTGAACGAATT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCATCTCACCAGCCCGAACCT-AAACTTTGAAACACTGTTGAACGAATT  849

seq1  TGGAAGGTGTTAAGGAATAAACAACTGATTTTAAAAGCTACGGTTTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGAAGGTGTTAAGGAATAAACAACTGATTTTAAAAGCTACTGTTTGGAA  899

seq1  AAGCTACGAAGAGCAAACACAATCAGTATGCTTTTCAAATTAGCTCCAGA  950
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  AAGCTACGAAGAGCAAACAC-ATCAGTATGCTTTTC-AATTAGCTCCAGA  947

seq1  CACAATCACCTTCCAGAACCAAGTGTACACTGCCAGAGGCACAGGGGAAG  1000
      |||||||| ||||||||||| ||||||||||||| || ||||| ||||  
seq2  CACAATCA-CTTCCAGAACC-AGTGTACACTGCC-GATGCACA-GGGAGC  993

seq1  CGGGTAGCCTCTGAAACACTAACGGGTTACCATGCTTGCTTGAT  1044
      ||||||||   ||||||||||||||| |||||||||||| ||||
seq2  CGGGTAGC--TTGAAACACTAACGGG-TACCATGCTTGCCTGAT  1034

seq1: chr3_157732323_157733474
seq2: B6Ng01-040G04.g_67_1200 (reverse)

seq1  TAGCTGACTGCCATGCCCAGGCATTATTCCACCTCAAAACTCCAGCTGTG  50
      ||||| |||| |||| ||||||| |||  | |||| ||||| |||||| |
seq2  TAGCT-ACTG-CATG-CCAGGCA-TAT--CCCCTC-AAACT-CAGCTG-G  41

seq1  CAAAACAAACTAGCAAAGAAAAAT-GTGTGTCTAAAAGACA-CAAAACCT  98
      | |||||||||||| ||||||||| |||||||||||||||| ||||||||
seq2  CCAAACAAACTAGC-AAGAAAAATGGTGTGTCTAAAAGACACCAAAACCT  90

seq1  GAGTTGCAATAAAAGGTTTTAATAAACTTCTTAATATAGGAAAATAACCT  148
      ||| |||||||||  | ||||||||    ||  |||||||||||||||||
seq2  GAGGTGCAATAAA--GGTTTAATAA----CTCTATATAGGAAAATAACCT  134

seq1  ATGAACAGCCAAAAATACATTTATACAATACAAGCAGCTTAGTGCTTAAG  198
      ||| |||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATG-ACAGCC-AAAATACATTTATACAATAC-AGCAGCTTAGTGCTTAAG  181

seq1  TGTCTTATTAGACTAAGCAAGAAGATCAATTACATTTGATCGTTTTTCCT  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCTTATTAGACTAAGCAAG-AGATCAATTACATTTGATCGTTTTTCCT  230

seq1  AACTATACTTAAGATAACCACATTTTATTTAATATCTATTTCATTCCCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACTTAAGATAACCACATTTTATTTAATATCTATTTCATTCCCCT  280

seq1  GAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTACACATATTTGGGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTACACATATTTGGGTCA  330

seq1  GTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTCTGGATACTGAAGCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTCTGGATACTGAAGCAG  380

seq1  TAGAAGGAGCTGCCAATGCCAAGCCATGATGGAACCTAAAGTTTAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGCTGCCAATGCCAAGCCATGATGGAACCTAAAGTTTAAAACA  430

seq1  AACATTTAATCTTGGGGTTGGGCTTTCTGCATAGTCCTCTTCCCTTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAATCTTGGGGTTGGGCTTTCTGCATAGTCCTCTTCCCTTTATC  480

seq1  CCTACATTCTATTTCTAAAGCATTTCTAAAGGCTTTAGTAGGCCTTTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTCTATTTCTAAAGCATTTCTAAAGGCTTTAGTAGGCCTTTTAG  530

seq1  GTCCTAGGAATTGAACCTAGCACCTTGAATCCTAGTCCTTGCAAGATCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGAATTGAACCTAGCACCTTGAATCCTAGTCCTTGCAAGATCTT  580

seq1  CCCATGTAGCCCAGACTGGCCTCAAACTTGTAATCCTCCTGCCTTTGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAGCCCAGACTGGCCTCAAACTTGTAATCCTCCTGCCTTTGACC  630

seq1  TTCCATTGCTGGAATCATAGGCATACATCATCAAGCCTGATGCAGTTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCTGGAATCATAGGCATACATCATCAAGCCTGATGCAGTTGCT  680

seq1  TGCTTTTTCATACTTGATCACAAACTGTCTGAACTGAAGTGCCGCTTCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCATACTTGATCACAAACTGTCTGAACTGAAGTGCCGCTTCCC  730

seq1  CCATACAAGTAGCCATGTCATTTGCTTTCCACCTGAGTCTTTGCTGCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTAGCCATGTCATTTGCTTTCCACCTGAGTCTTTGCTGCTTC  780

seq1  TTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCCATTTACTTACTGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCCATTTACTTACTGGGA  830

seq1  GGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTAGACCCTGACTTGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTAGACCCTGACTTGAGG  880

seq1  CTCATTTTAGGACATGTGTATTTCCTCAGATACACTGGGTGTTTCTGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTAGGACATGTGTATTTCCTCAGATACACTGGGTGTTTCTGATA  930

seq1  GAAATTGAAAGTTGTCTTCTGTACATCCCTGATAGATGCATTCATATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAAAGTTGTCTTCTGTACATCCCTGATAGATGCATTCATATTTT  980

seq1  TAACACTTGGAACGGGAAGCCATGGGAAGCCAAAGGTTAAATCCTTGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGGAACGGGAAGCCATGGGAAGCCAAAGGTTAAATCCTTGAAG  1030

seq1  CTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCTGTGAGAGCTTTGCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCTGTGAGAGCTTTGCTT  1080

seq1  GGGGATAGGATGGGAAATCAATATAAGAGATAAAACGTATTAGCAAGAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGGATGGGAAATCAATATAAGAGATAAAACGTATTAGCAAGAGA  1130

seq1  ATTC  1152
      ||||
seq2  ATTC  1134