BAC Information

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BAC

Clone NameB6Ng01-040I04
Chromosome3 (Build37)
Map Location 150,478,672 - 150,479,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I04.bB6Ng01-040I04.g
ACCDH867452DH867453
length1,1181,014
definitionDH867452|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I04, 5' end.DH867453|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccagatttataaagaacaattttcacaatcattaggaataa
caaaaatcccaggatagtgaatactgttgtcaacaataaaagaacttctt
ggggaatcagtatccctgacctcaagctgtactacagagcaatagttata
aaatctgcatggtatttgcacagagacaggcaagaagatcattttaatag
aattgaagactgagaaattaacccacacacctatggacacttgatctttg
acaaaggagctaaaatcatccagtggaaaaaagacaacattttcaagaaa
tggttctggttcaactggaggccaatatgtagaagaatgaatatctgtct
attcttgtctccttgtacaaagctacatccaatgcatcaagaacctctac
attaaaccagatacatggaaactaatagaagagaaagtggggaagagcct
ctaacacatggggacaggagaaatgttcctgaacataacaccaatggttt
atgctctaagatcaacaataggcaaatgggaccttataaaatttcaaagc
ttctgtaaggcaaagggtactgtcaatagaacaaaacagcatccaagaga
ttgaaaaaaagatctttaccaatcttaaatccaataaagggctaatatcc
aatgtacacaaaggattcaagaagttagactccagagaaccaaataaccc
tatcaaaaaatgggatatagagctaaacaaagagttctcaattgaggaat
ctcgaatggctgagaagcacataaaaaaaaaaagaagaagaaagaaagaa
agaaagaaagagagagagagagagagagagagagagagagagagagagag
agagaaagaaagaaagaaagaagagaaaagaaaagaaagaaaagaaatag
aatagtaaaggaaagataggataagaaaggaaagaaagaaaggaaaggaa
aagaaaagaagagaaaaaagaaagttcacattcttagtcatcaggaaatg
caaccaaacaaccttaagatcccctcacacagtcgaatgctaagatcaaa
actcaggtgacagccgatgctggcaggatgtggaagaaagaggaacctct
cctaatgttggtgggatg
gaattccttaagcatgttgacaggagacactgttgttagaattaccaatg
gacctctcaatactcaagactgagagaataacagggtctcattattgtgc
ccaggccaaggaaattcaaatatgcagcagactttaacaccactggcatt
agttatatatttgtgaaacttgttctttaaatgcatttgtaatgttgacc
tacatagccctttattagagtaacagactattgaggttaaaaaccattgc
agctaatagcagagtactcttcctgaactaattccaccattacaagacac
ttcaaaggcaatttcctaatctgtattttatactgttgaaaatacttaag
tagtactctgcactttttcaaacatttcccattattgtaaattaactgga
aaatgcttaagaatatacttatcttacataggcaaaatgttgaattctag
tctcatttcaataaaactagaaaggttctggttaaactagatagttaatc
ataatagcaaattaaaagcaaggttgcttatatctttataaagcaagaat
gcatacttaccatccccaaacataattaagattattttgtggtaaaggaa
atttgaaaccagatactctgaattctcccttgtcttcttaaaattgggaa
tacaaatctctgttataagtatatctcttgtcttattttcatggcttact
agcttgtgttcaatataacatatgtgcttctactgtgtgtatgtgtattt
attaaatgtctataaatgcatatgttttgcgtgactctgtgcacctcatg
tgagttaatatgagctcagtgtgtcacagtagtttcacttgtgtgaaggt
cagagacattgctgttctgcactgtacacagacaattatacaatgctttt
cagctgctaagtagtgcttgtgagactttacttaatttataagtatacca
caaaagatgagggagatttagcaatacccaagttaatgaaggtttttggg
ggggggagtttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150478672_150479688
seq2: B6Ng01-040I04.g_68_1081

seq1  GAATTCCTTAAGCATGTTGACAGGAGACACTGTTGTTAGAATTACCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGCATGTTGACAGGAGACACTGTTGTTAGAATTACCAATG  50

seq1  GACCTCTCAATACTCAAGACTGAGAGAATAACAGGGTCTCATTATTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCAATACTCAAGACTGAGAGAATAACAGGGTCTCATTATTGTGC  100

seq1  CCAGGCCAAGGAAATTCAAATATGCAGCAGACTTTAACACCACTGGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAAGGAAATTCAAATATGCAGCAGACTTTAACACCACTGGCATT  150

seq1  AGTTATATATTTGTGAAACTTGTTCTTTAAATGCATTTGTAATGTTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATATTTGTGAAACTTGTTCTTTAAATGCATTTGTAATGTTGACC  200

seq1  TACATAGCCCTTTATTAGAGTAACAGACTATTGAGGTTAAAAACCATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCCCTTTATTAGAGTAACAGACTATTGAGGTTAAAAACCATTGC  250

seq1  AGCTAATAGCAGAGTACTCTTCCTGAACTAATTCCACCATTACAAGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAGCAGAGTACTCTTCCTGAACTAATTCCACCATTACAAGACAC  300

seq1  TTCAAAGGCAATTTCCTAATCTGTATTTTATACTGTTGAAAATACTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCAATTTCCTAATCTGTATTTTATACTGTTGAAAATACTTAAG  350

seq1  TAGTACTCTGCACTTTTTCAAACATTTCCCATTATTGTAAATTAACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTCTGCACTTTTTCAAACATTTCCCATTATTGTAAATTAACTGGA  400

seq1  AAATGCTTAAGAATATACTTATCTTACATAGGCAAAATGTTGAATTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTAAGAATATACTTATCTTACATAGGCAAAATGTTGAATTCTAG  450

seq1  TCTCATTTCAATAAAACTAGAAAGGTTCTGGTTAAACTAGATAGTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCAATAAAACTAGAAAGGTTCTGGTTAAACTAGATAGTTAATC  500

seq1  ATAATAGCAAATTAAAAGCAAGGTTGCTTATATCTTTATAAAGCAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCAAATTAAAAGCAAGGTTGCTTATATCTTTATAAAGCAAGAAT  550

seq1  GCATACTTACCATCCCCAAACATAATTAAGATTATTTTGTGGTAAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTACCATCCCCAAACATAATTAAGATTATTTTGTGGTAAAGGAA  600

seq1  ATTTGAAACCAGATACTCTGAATTCTCCCTTGTCTTCTTAAAATTGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACCAGATACTCTGAATTCTCCCTTGTCTTCTTAAAATTGGGAA  650

seq1  TACAAATCTCTGTTATAAGTATATCTCTTGTCTTATTTTCATGGCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTCTGTTATAAGTATATCTCTTGTCTTATTTTCATGGCTTACT  700

seq1  AGCTTGTGTTCAATATAACATATGTGCTTCTACTGTGTGTATGTGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTTCAATATAACATATGTGCTTCTACTGTGTGTATGTGTATTT  750

seq1  ATTAAATGTCTATAAATGCATATGTTTTGCGTGACTCTGTGCACCTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTCTATAAATGCATATGTTTTGCGTGACTCTGTGCACCTCATG  800

seq1  TGAGTTAATATGAGCTCAGTGTGTCACAGTAG-TTCACTTGTGTGAAGGT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAGTTAATATGAGCTCAGTGTGTCACAGTAGTTTCACTTGTGTGAAGGT  850

seq1  CAGAGACATTGCTGTTCTGCACTGTACACAGACAATTATACAATGCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATTGCTGTTCTGCACTGTACACAGACAATTATACAATGCTTTT  900

seq1  CAGCTGCTAAGTAGTTGCTTGTGAGACTTTACTTAATTTATAAGTATACC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTAAGTAG-TGCTTGTGAGACTTTACTTAATTTATAAGTATACC  949

seq1  ACAAAAAGATGAGGGAGATTTAGCAATTACCCAAGTTTAATGAAGGTTTT  999
      || ||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  AC-AAAAGATGAGGGAGATTTAGCAA-TACCCAAG-TTAATGAAGGTTTT  996

seq1  TGGTGGGGGGAGTTTGAA  1017
      ||| ||||||||||||||
seq2  TGGGGGGGGGAGTTTGAA  1014