BAC Information

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BAC

Clone NameB6Ng01-040O12
Chromosome3 (Build37)
Map Location 53,673,675 - 53,794,405
singlet/doubletdoublet
Overlap genenone
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040O12.bB6Ng01-040O12.g
ACCDH867731DH867732
length975345
definitionDH867731|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O12, 5' end.DH867732|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,793,432 - 53,794,405)(53,673,675 - 53,673,994)
sequence
gaattcacacaaattagtttgaactgcagtttttacagtctaagtagtgg
aacaaaatgtcataaataatggtaacttaaagggggttatttagtctagc
agactgcaaatgaggattaaccaagctgagtccaatcccaagagacttgt
acacttgggaacaatatgaggcaggggtggagaatcactcctgggtgaaa
aataagagcaaggtagagaccatacttcacaatggctcagaatgacagaa
agataactggctaatgagatgaagtaagctgaaaacatgtttttggatgg
ttgatgaatttggttttattttaaaataagatattgcatatattttgttt
tgtttctgctgctctcctcctggcccagcccttatttagctgtcattagg
aggacatttcctgacctcctgaccagtgtccctgagcccccctaacatag
tggaaggatacttttagtctcggtcatagcaagccactctctgctctcca
gcctacactggagtccacatagcactgggaatagaggccaagatagaact
gccttggacttgaactctgtgtatatcagcctaaaggaccctccacccat
cctctgcccttgcagatgtgtcctcatcaaaggacaattgcttagaccta
aatgtcagatcacctgtgacttcaagtttgtgttatattattttacctag
cactttaaaacgaagggaacagaaacaatacacaattgctacaattatac
tgtaatttaatactgtaattattcttacattttaatttaaaatctaattg
taattttaattaattttcttgaaattcataccgacaacacaacagggtct
tcctcttgcactggtctaatcttggctaggaaaaccctgtcctcccacag
tgtgtaggatcacacttcttcttcccaagcatcatatttttgtctgtgaa
agattggttatgaaagataaacagt
aggtgttctcaaagccggaggtgctggctgtggtaaccaaaggaggaaat
tattgtttgcaaataccaacttgaaatatcacagaattctaaattatctt
tcttacaacaggcattttaattataaaaaccaggactttaacagtcttat
ataatgcatttttctctttattgcagtcatgcctcatttaatggaaacat
ttgttagaaatgttaaagtagtctgatataactattccaaacatgtttgg
atatatatatgtatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53793432_53794405
seq2: B6Ng01-040O12.b_46_1020 (reverse)

seq1  ACTGTTTATCTTTCATAACCAATCTTTTCACAGACAAAAAATATGATGCT  50
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  ACTGTTTATCTTTCATAACCAATC-TTTCACAGAC-AAAAATATGATGCT  48

seq1  TGGGAAAGAGAAGTGTGATTCCTACCCACTGTGGG-GGACAGGGTTTTCC  99
      ||||||  |||||||||| |||||| ||||||||| ||||||||||||||
seq2  TGGGAAGAAGAAGTGTGA-TCCTACACACTGTGGGAGGACAGGGTTTTCC  97

seq1  TAGCCAAGATTAGACCAGTGCAAGAGGAAGACCCTGTTGTGTTGTCGGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAGATTAGACCAGTGCAAGAGGAAGACCCTGTTGTGTTGTCGGTA  147

seq1  TGAATTTCAAG-AAATTAATTAAAATTACAATTAGA-TTTAAATTAAAAT  197
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TGAATTTCAAGAAAATTAATTAAAATTACAATTAGATTTTAAATTAAAAT  197

seq1  GTAAGAATAATTACAGTATTAAATTACAGTATAATTGTAGCAATTGTGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATAATTACAGTATTAAATTACAGTATAATTGTAGCAATTGTGTA  247

seq1  TTGTTTCTGTTCCCTTCGTTTT-AAGTGCTAGGTAAAATAATATAACACA  296
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTTTCTGTTCCCTTCGTTTTAAAGTGCTAGGTAAAATAATATAACACA  297

seq1  AACTTGAAGTCACAGGTGATCTGACATTTAGGTCTAAGCAATTGTCCTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGTCACAGGTGATCTGACATTTAGGTCTAAGCAATTGTCCTTT  347

seq1  GATGAGGACACATCTGCAAGGGCAGAGGATGGGTGGAGGGTCCTTTAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGACACATCTGCAAGGGCAGAGGATGGGTGGAGGGTCCTTTAGGC  397

seq1  TGATATACACAGAGTTCAAGTCCAAGGCAGTTCTATCTTGGCCTCTATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACACAGAGTTCAAGTCCAAGGCAGTTCTATCTTGGCCTCTATTC  447

seq1  CCAGTGCTATGTGGACTCCAGTGTAGGCTGGAGAGCAGAGAGTGGCTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTATGTGGACTCCAGTGTAGGCTGGAGAGCAGAGAGTGGCTTGC  497

seq1  TATGACCGAGACTAAAAGTATCCTTCCACTATGTTAGGGGGGCTCAGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCGAGACTAAAAGTATCCTTCCACTATGTTAGGGGGGCTCAGGGA  547

seq1  CACTGGTCAGGAGGTCAGGAAATGTCCTCCTAATGACAGCTAAATAAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCAGGAGGTCAGGAAATGTCCTCCTAATGACAGCTAAATAAGGG  597

seq1  CTGGGCCAGGAGGAGAGCAGCAGAAACAAAACAAAATATATGCAATATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCAGGAGGAGAGCAGCAGAAACAAAACAAAATATATGCAATATCT  647

seq1  TATTTTAAAATAAAACCAAATTCATCAACCATCCAAAAACATGTTTTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATAAAACCAAATTCATCAACCATCCAAAAACATGTTTTCAG  697

seq1  CTTACTTCATCTCATTAGCCAGTTATCTTTCTGTCATTCTGAGCCATTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCATCTCATTAGCCAGTTATCTTTCTGTCATTCTGAGCCATTGT  747

seq1  GAAGTATGGTCTCTACCTTGCTCTTATTTTTCACCCAGGAGTGATTCTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGGTCTCTACCTTGCTCTTATTTTTCACCCAGGAGTGATTCTCC  797

seq1  ACCCCTGCCTCATATTGTTCCCAAGTGTACAAGTCTCTTGGGATTGGACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCCTCATATTGTTCCCAAGTGTACAAGTCTCTTGGGATTGGACT  847

seq1  CAGCTTGGTTAATCCTCATTTGCAGTCTGCTAGACTAAATAACCCCCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGTTAATCCTCATTTGCAGTCTGCTAGACTAAATAACCCCCTTT  897

seq1  AAGTTACCATTATTTATGACATTTTGTTCCACTACTTAGACTGTAAAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCATTATTTATGACATTTTGTTCCACTACTTAGACTGTAAAAAC  947

seq1  TGCAGTTCAAACTAATTTGTGTGAATTC  974
      ||||||||||||||||||||||||||||
seq2  TGCAGTTCAAACTAATTTGTGTGAATTC  975

seq1: chr3_53673675_53673994
seq2: B6Ng01-040O12.g_67_386

seq1  GAATTCAGGTGTTCTCAAAGCCGGAGGTGCTGGCTGTGGTAACCAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTTCTCAAAGCCGGAGGTGCTGGCTGTGGTAACCAAAGGA  50

seq1  GGAAATTATTGTTTGCAAATACCAACTTGAAATATCACAGAATTCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATTGTTTGCAAATACCAACTTGAAATATCACAGAATTCTAAAT  100

seq1  TATCTTTCTTACAACAGGCATTTTAATTATAAAAACCAGGACTTTAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTTACAACAGGCATTTTAATTATAAAAACCAGGACTTTAACAG  150

seq1  TCTTATATAATGCATTTTTCTCTTTATTGCAGTCATGCCTCATTTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATAATGCATTTTTCTCTTTATTGCAGTCATGCCTCATTTAATGG  200

seq1  AAACATTTGTTAGAAATGTTAAAGTAGTCTGATATAACTATTCCAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGTTAGAAATGTTAAAGTAGTCTGATATAACTATTCCAAACAT  250

seq1  GTTTGGATATATATATGTATATATATATATATATATATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATATATATATGTATATATATATATATATATATATATATATATAT  300

seq1  ATATATATATATATATATAT  320
      ||||||||||||||||||||
seq2  ATATATATATATATATATAT  320