BAC Information

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BAC

Clone NameB6Ng01-041A21
Chromosome3 (Build37)
Map Location 132,942,376 - 132,943,511
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041A21.bB6Ng01-041A21.g
ACCDH867829DH867830
length1,1541,128
definitionDH867829|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A21, 5' end.DH867830|Mus musculus domesticus DNA, BAC clone: B6Ng01-041A21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcacagggcaagttaatcataaaatggagcctgaaagcaaaa
tagagtttgtaatgttaagctgggcccttcaggtttattttgagttatag
gtctagaaggataacgtgcatcatggaagggaagacatagtgccaggaac
aggaagttaactgaccacatctcctctgtactcagaaacagaacaaacag
gaagtggaaccaggttataaaaccttaaaatccactcccaggaacacact
tcctccagcaaggctaaccttctacaggtaccatcactttcccaaataac
acctccacttgggggttaagtgtttaaacacatgactctaagggaaacat
ttcttaatcaaaatgcagtagttaatcccctcaaatcattaaaaatatat
gcaaacaaatgagttttctttaagaaaaatagcaatgttagaaatacatt
caacttagcctctttgagtctgtggattgtacatggttttcctgtacttt
ataactaatatctacttatatgtgagtacataccatgtttgtctttcagg
gtcagggttacctcactcgggatgatattttctggttctatccatttgcc
tgcaaatttcatgaagccattgcttttaacagctgaataatattacactg
tgtaaatgtgccacatttcctttatcaattcttctgttgagggaaatcta
agttgtctccattttttttgctattacaaataaaatttctataaacatag
ctaatcaagtgtccttgtggtatggcagagcatcttttgggtaaatgccc
aggagtggtataactggtcttaaggttagatctattcccaatttttccga
gaaaccaccaatttgatatctaaaagtggttgtactagtttgcacccacc
agcaatggaggagtgttccccttgctctacatccttgccagcacaaccca
tgaaaccaagaagctagtacagaagggacaggagctaggcagtggtggcc
gcatggctttgatccagcacttgggaggcagagcagcagatttctgattt
caggcagctgattcagagtgagtccaggacagcagactatatgagaaact
ctgtcttgaaaatcaaaccaggacatgggaaaatgcctgaatctctcact
gaga
gaattcttggagagtgaacactgaagaaaaaaattaaatcagcattttat
gttttggtgactatgcaacatttaccatgcctttacattttatttactca
aaatacaaggatactgacttttttatgacagtttttatttgttgagctat
aaaactatctcagaaaattacatacttttcaaagtcaaggctgaacccag
tgctctgcttatcattgaagagaacagctttcaactttaaatacactttt
aaaaaaagctatagatttttaaatcttatttatttgtttatttatttatt
atttatttacttacttatttatttggtttttggagataaggtttctctgt
gtagccctggctgttctggagctcactctgtagaccaggatgtccttgaa
ctcagaaatctgcctgcctctgcctcccaagtgctggtattaaaggcgtg
tgccaccactgcctggcttaaatacactttaaattcattgttattcctgg
tttctaaaataagaaccaaatttacagctgtgtagaaaaaaagttaccac
agtcccacttttgtccagttatgtaaatccacattctaatttaccttata
agtgttggattgagtatcgaaatactagtgttcccatggaaaaatagcca
ttcctaaatattttattagaactaacttataaatgattccatatagtcta
tctactttgtgctttgattatgtatttatcacttttcatgaacattctaa
cttggctctcctatactactcttcatgctttgtgctgcggttcaaaatta
cacttcatgtcatcttttatatcttttcaaacattgtcattcatttcttt
accacagctgaccttgcaaaatccttgtggggacatgttttcttaacttc
ctactgctctgtactaaagctagtgttcagcttgagcgataggatggggc
tagtttctatggttgcggttatagatgtcttttatatgaaatgtttcttg
tatcctctgtgattaaacattaaaagtatctcggtgtttttgcttattac
actcaggtagcatttcctaagctcttgcattcaatcgggagctaactcga
aaaactaattgtacttaaaaaatataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132942376_132943511
seq2: B6Ng01-041A21.g_67_1194

seq1  GAATTCTTGGAGAGTGAACACTGAAGAAAAAAATTAAATCAGCATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGAGTGAACACTGAAGAAAAAAATTAAATCAGCATTTTAT  50

seq1  GTTTTGGTGACTATGCAACATTTACCATGCCTTTACATTTTATTTACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTGACTATGCAACATTTACCATGCCTTTACATTTTATTTACTCA  100

seq1  AAATACAAGGATACTGACTTTTTTATGACAGTTTTTATTTGTTGAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGGATACTGACTTTTTTATGACAGTTTTTATTTGTTGAGCTAT  150

seq1  AAAACTATCTCAGAAAATTACATACTTTTCAAAGTCAAGGCTGAACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATCTCAGAAAATTACATACTTTTCAAAGTCAAGGCTGAACCCAG  200

seq1  TGCTCTGCTTATCATTGAAGAGAACAGCTTTCAACTTTAAATACACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTTATCATTGAAGAGAACAGCTTTCAACTTTAAATACACTTTT  250

seq1  AAAAAAAGCTATAGATTTTTAAATCTTATTTATTTGTTTATTTATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCTATAGATTTTTAAATCTTATTTATTTGTTTATTTATTTATT  300

seq1  ATTTATTTACTTACTTATTTATTTGGTTTTTGGAGATAAGGTTTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTACTTACTTATTTATTTGGTTTTTGGAGATAAGGTTTCTCTGT  350

seq1  GTAGCCCTGGCTGTTCTGGAGCTCACTCTGTAGACCAGGATGTCCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGCTGTTCTGGAGCTCACTCTGTAGACCAGGATGTCCTTGAA  400

seq1  CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGTATTAAAGGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGTATTAAAGGCGTG  450

seq1  TGCCACCACTGCCTGGCTTAAATACACTTTAAATTCATTGTTATTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACTGCCTGGCTTAAATACACTTTAAATTCATTGTTATTCCTGG  500

seq1  TTTCTAAAATAAGAACCAAATTTACAGCTGTGTAGAAAAAAAGTTACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAATAAGAACCAAATTTACAGCTGTGTAGAAAAAAAGTTACCAC  550

seq1  AGTCCCACTTTTGTCCAGTTATGTAAATCCACATTCTAATTTACCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACTTTTGTCCAGTTATGTAAATCCACATTCTAATTTACCTTATA  600

seq1  AGTGTTGGATTGAGTATCGAAATACTAGTGTTCCCATGGAAAAATAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGATTGAGTATCGAAATACTAGTGTTCCCATGGAAAAATAGCCA  650

seq1  TTCCTAAATATTTTATTAGAACTAACTTATAAATGATTCCATATAGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATATTTTATTAGAACTAACTTATAAATGATTCCATATAGTCTA  700

seq1  TCTACTTTGTGCTTTGATTATGTATTTATCACTTTTCATGAACATTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTGTGCTTTGATTATGTATTTATCACTTTTCATGAACATTCTAA  750

seq1  CTTGGCTCTCCTATACTACTCTTCATGCTTTGTGCTGCGGTTCAAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTCCTATACTACTCTTCATGCTTTGTGCTGCGGTTCAAAATTA  800

seq1  CACTTCATGTCATCTTTTATATC-TTTCAAACATTGTCATTCATTTCTTT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACTTCATGTCATCTTTTATATCTTTTCAAACATTGTCATTCATTTCTTT  850

seq1  ACCACAGCTGACCTTGCAAAATCCTTGT-GGGACATG-TTTCTTAACTTC  897
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  ACCACAGCTGACCTTGCAAAATCCTTGTGGGGACATGTTTTCTTAACTTC  900

seq1  CTACTGCTCTGTACTAGAAGCTAAGTGTTCAGCCTTGAGCGATAGGAT-G  946
      |||||||||||||||| ||||| ||||||||| ||||||||||||||| |
seq2  CTACTGCTCTGTACTA-AAGCT-AGTGTTCAG-CTTGAGCGATAGGATGG  947

seq1  GGCTAGGTTTCTATGGTTGCGGTTTATAGAATGTCTTTTAATATGAAATG  996
      ||||| |||||||||||||||| |||||| ||||||||| ||||||||||
seq2  GGCTA-GTTTCTATGGTTGCGG-TTATAG-ATGTCTTTT-ATATGAAATG  993

seq1  TTTCTTTGTAT-CTCTGTGATTAAAACAATTAAAAGTATCTCTGTGTTTT  1045
      |||| |||||| |||||||||||||   |||||||||||||| |||||||
seq2  TTTC-TTGTATCCTCTGTGATTAAA--CATTAAAAGTATCTCGGTGTTTT  1040

seq1  TGCTTTATTACACTCAGGTACTGCATTTCCTAAGCTCTTGCATTTACATC  1095
      ||| ||||||||||||||||  |||||||||||||||||||||| | |||
seq2  TGC-TTATTACACTCAGGTA--GCATTTCCTAAGCTCTTGCATTCA-ATC  1086

seq1  GGGAGCAAACTCGAACAACTAAATGTACTT-AAAAAGATAAA  1136
      |||||| |||||||| |||||| ||||||| ||||| |||||
seq2  GGGAGCTAACTCGAAAAACTAATTGTACTTAAAAAATATAAA  1128