BAC Information

Click to search

BAC

Clone NameB6Ng01-041C16
Chromosome1 (Build37)3 (Build37)
Map Location 45,234,660 - 45,235,16941,059,156 - 41,059,708
singlet/doubletsingletsinglet
Overlap geneLOC383640
Upstream geneErcc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
Downstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C16.bB6Ng01-041C16.g
ACCDH867906DH867907
length510586
definitionDH867906|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C16, 5' end.DH867907|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,234,660 - 45,235,169)(41,059,156 - 41,059,708)
sequence
gaattcacatgtttgaccttttgatgtgttaataaaatatgtggaaatac
atcctatttcaaacttcatgccttcaataatttctagctcatcatgcagg
atttttccatccttcactgtgatgacaccctttcttccaacctttttcat
tgcatcagaaatgatgttcccaatgtttttgtctccatttgcagaaatta
cagcaacctgaacaatttcttcaagggttgtcatgggtttagattttttc
ttaagttctctttttttggttgggtccttgtgtgatttaggtattagagt
aattgtggcttcatagaatgaattaggtagtgttccttctgtttctattt
tatggaatagtttgaggaacattgttgtcaggcgttctttgaaggtctgg
tagaaatctgcactaaatccctctagccctgggctgctgctgctgctgct
gcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttct
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttcttttatatatattggatattagtcc
cctatttgatttaggataggaaaatatcttttcccaatctgttggtggcc
tttttgtcttattgactgtgtcttttgccttccagaagctttgcagtttc
atgaggtcccatttgttaattctcaatcttacagcacaagccattgctgt
tctattcaggaatatttcccctgtgcccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgtcttttattgtatgtggaggtccttg
atccacttagatttgacctcagtacaaggagatatgaatgaatcaattcg
cattcttctacattataaccaccagttgtgccagcaccattggttgaaaa
tgctgtctttttttccactgcatggttttagctcccttgtcaaagatcaa
gttaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
ggtcttcttgtcttttgcaataccagtaccatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45234660_45235169
seq2: B6Ng01-041C16.b_34_543 (reverse)

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  50

seq1  AAGAAGAAGCAGCAGCAGCAGCAGCAGCCCAGGGCTAGAGGGATTTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGCAGCAGCAGCAGCAGCAGCCCAGGGCTAGAGGGATTTAGTG  100

seq1  CAGATTTCTACCAGACCTTCAAAGAACGCCTGACAACAATGTTCCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTACCAGACCTTCAAAGAACGCCTGACAACAATGTTCCTCAAA  150

seq1  CTATTCCATAAAATAGAAACAGAAGGAACACTACCTAATTCATTCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCATAAAATAGAAACAGAAGGAACACTACCTAATTCATTCTATGA  200

seq1  AGCCACAATTACTCTAATACCTAAATCACACAAGGACCCAACCAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAATTACTCTAATACCTAAATCACACAAGGACCCAACCAAAAAAA  250

seq1  GAGAACTTAAGAAAAAATCTAAACCCATGACAACCCTTGAAGAAATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTTAAGAAAAAATCTAAACCCATGACAACCCTTGAAGAAATTGTT  300

seq1  CAGGTTGCTGTAATTTCTGCAAATGGAGACAAAAACATTGGGAACATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCTGTAATTTCTGCAAATGGAGACAAAAACATTGGGAACATCAT  350

seq1  TTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTGAAGG  400

seq1  ATGGAAAAATCCTGCATGATGAGCTAGAAATTATTGAAGGCATGAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAATCCTGCATGATGAGCTAGAAATTATTGAAGGCATGAAGTTT  450

seq1  GAAATAGGATGTATTTCCACATATTTTATTAACACATCAAAAGGTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGGATGTATTTCCACATATTTTATTAACACATCAAAAGGTCAAAC  500

seq1  ATGTGAATTC  510
      ||||||||||
seq2  ATGTGAATTC  510

seq1: chr3_41059156_41059708
seq2: B6Ng01-041C16.g_99_654 (reverse)

seq1  CTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATT  50
      ||||||||||||||||| |  | ||||||| |||||||||||||||||||
seq2  CTGCATGGTACTGGTATTGCAAAAGACAAGAAGACCAATGGAATAGAATT  50

seq1  GAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAA  100
      |||||| |||||| ||| ||||||||||||||| |||||||||| |||||
seq2  GAAGACCCAGAAATGAACCCACACACCTATGGTAACTTGATCTTTGACAA  100

seq1  GGGAGCTAAAACCATCCAGTGG-AAAAAAGACAGCATTTTCAACAAATGG  149
      ||||||||||||||| |||||| ||||||||||||||||||||| |||||
seq2  GGGAGCTAAAACCATGCAGTGGAAAAAAAGACAGCATTTTCAACCAATGG  150

seq1  TGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACT  199
      |||||||||||||||| ||||| |||||||||||||||||||||| || |
seq2  TGCTGGCACAACTGGTGGTTATAATGTAGAAGAATGCGAATTGATTCATT  200

seq1  CCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACA  249
      | |||||||||||||| ||||||||||||||||||||||||| | |||||
seq2  CATATCTCCTTGTACTGAGGTCAAATCTAAGTGGATCAAGGACCTCCACA  250

seq1  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTT  299
      || ||  | |||||||||||||||||||||||||||| ||||||||||| 
seq2  TACAATAAAAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTC  300

seq1  GAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTG  349
      |||||||||| ||||||||||| ||||||| |||||||||||||||||||
seq2  GAAGATATGGGCACAGGGGAAATATTCCTGAATAGAACAGCAATGGCTTG  350

seq1  TGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCT  399
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGCTGTAAGATTGAGAATTAACAAATGGGACCTCATGAAACTGCAAAGCT  400

seq1  TCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGAT  448
      |||| |||||||||||||| |||||||||||||||||| |||||||||||
seq2  TCTGGAAGGCAAAAGACACAGTCAATAAGACAAAAAGGCCACCAACAGAT  450

seq1  TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAA  498
      ||||||| ||| ||| |||||||||||||| |||||||||||||||||||
seq2  TGGGAAAAGATATTTTCCTATCCTAAATCAAATAGGGGACTAATATCCAA  500

seq1  TATATAT-CAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCC  547
      |||||||  ||||||||||||||||||| |||||||||||||||||||||
seq2  TATATATAAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  550

seq1  ATTAAA  553
      ||||||
seq2  ATTAAA  556