BAC Information

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BAC

Clone NameB6Ng01-041G12
Chromosome3 (Build37)
Map Location 50,806,644 - 50,939,932
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041G12.bB6Ng01-041G12.g
ACCDH868081DH868082
length809740
definitionDH868081|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G12, 5' end.DH868082|Mus musculus domesticus DNA, BAC clone: B6Ng01-041G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,939,124 - 50,939,932)(50,806,644 - 50,807,381)
sequence
gaattctctctattccttatgggagagagaggcacatttgtaaaattaaa
agtcaatgcctctttgatgagaggatttgccggctcttctgtccttttta
aaaacactgtgtgcttggcaggaagagccaagaaactaaacctctcctca
aggacattgggggtgagcaggagcaagccgcttacttttcttctttcaga
tctcaaggccgtgcgagcccttttctaaaagaactaggtaggtggtaggt
ggcattgactggctgttctgaggaacatggccttgtctgcgtggcttgat
aatatctgttaattcagaggagaaaaacatcttagctgtggcaatggcat
tgtgccactaaaacaaagactgactggagctttctttgcctttttggatt
ttcctcttttgagacaggtctcatgtaacactgtctgccttcagacttgc
tgtgtagcccaggtgactttacacttttcatccccctgcctctacctctg
catgctgggactccaggtgtgtactgccatgccaagtttgtgcagtaatg
gggattggacccagggctttgtgcatactaggcaagcacacagccaactg
agtgacggcccccagctcaaggctttagtctcttcatgtcctgttttggg
ggtatgtgttcatgcttacatggggtccaggaccgcaatcactacacagg
tcttttctggaggccaccatctgtctggggcagagttctttcctaaaatc
acttatgattcaagaggacacaggaggtagtatttttgtagatctgcaaa
gtttcctga
gaattccatcacgggattatcctccgtgactctgcagtagacttcaatgg
tcatccccaaacaggtcttcagagaggcccagacagagtacctccctgtg
aacctgcacagcctagtaggacaagcctctcagcagccgagcttctgctt
cattagccctgctgggcatgcctgaactgctctttgaagcaagcctgcgt
gccagctatagccacatacaaatatcacttactgagtgaccctggaagca
aagaaattgtgcagtttgggtgactgggatcaaaattgaatctggactgc
atatttatcgtcctcttaccaatatccacaccataaatcaaactctagct
ctttgtagaaatgctttcagggataaagcgccttcatgctatgcttgtca
cccccaaacagtatattttcttaaattcagagccaggaccagcaaaccat
tcaactaaataagggaacactcttaatgcaacaaatgttccccataatgc
ctaactccaatgaaagctgaatgaaaacacacatccttgccctcaatata
aagaatgagcaggttctgtttttcttttttaaagaatgaggggccgctta
gagcttctctcgcagtcacaatggaacaaatgacctgctcttttgtaaag
agcaaccgcaggagctggggtggagctcagtggtggatctggatgagcag
catcttccatccccagcagccaagagaaaaagcaacagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50939124_50939932
seq2: B6Ng01-041G12.b_40_848 (reverse)

seq1  TCAGGAAACTCTGCAGATCTACAAAAGTACTACCTCCTTGTGTCCTCTTG  50
      |||||||||| ||||||||||||||| |||||||||| ||||||||||||
seq2  TCAGGAAACTTTGCAGATCTACAAAAATACTACCTCC-TGTGTCCTCTTG  49

seq1  AATCCTAAGTGATTTTAGGAAAGAACTCTGCCACAGACAGATGGTGGCCT  100
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATCATAAGTGATTTTAGGAAAGAACTCTGCCCCAGACAGATGGTGGCCT  99

seq1  CCAGAAAAGACCTGTGTAGTGATTGCGGTCCTGGACCCCATGTAAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGACCTGTGTAGTGATTGCGGTCCTGGACCCCATGTAAGCATG  149

seq1  AACACATACCCCC-AAACAGGACATGAAGAGACTAAAGCCTTGAGCTGGG  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACACATACCCCCAAAACAGGACATGAAGAGACTAAAGCCTTGAGCTGGG  199

seq1  GGCCGTCACTCAGTTGGCTGTGTGCTTGCCTAGTATGCACAAAGCCCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTCACTCAGTTGGCTGTGTGCTTGCCTAGTATGCACAAAGCCCTGG  249

seq1  GTCCAATCCCCATTACTGCACAAACTTGGCATGGCAGTACACACCTGGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATCCCCATTACTGCACAAACTTGGCATGGCAGTACACACCTGGAG  299

seq1  TCCCAGCATGCAGAGGTAGAGGCAGGGGGATGAAAAGTGTAAAGTCACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATGCAGAGGTAGAGGCAGGGGGATGAAAAGTGTAAAGTCACCT  349

seq1  GGGCTACACAGCAAGTCTGAAGGCAGACAGTGTTACATGAGACCTGTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGCAAGTCTGAAGGCAGACAGTGTTACATGAGACCTGTCTC  399

seq1  AAAAGAGGAAAATCCAAAAAGGCAAAGAAAGCTCCAGTCAGTCTTTGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAAAATCCAAAAAGGCAAAGAAAGCTCCAGTCAGTCTTTGTTT  449

seq1  TAGTGGCACAATGCCATTGCCACAGCTAAGATGTTTTTCTCCTCTGAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCACAATGCCATTGCCACAGCTAAGATGTTTTTCTCCTCTGAATT  499

seq1  AACAGATATTATCAAGCCACGCAGACAAGGCCATGTTCCTCAGAACAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATTATCAAGCCACGCAGACAAGGCCATGTTCCTCAGAACAGCC  549

seq1  AGTCAATGCCACCTACCACCTACCTAGTTCTTTTAGAAAAGGGCTCGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCCACCTACCACCTACCTAGTTCTTTTAGAAAAGGGCTCGCAC  599

seq1  GGCCTTGAGATCTGAAAGAAGAAAAGTAAGCGGCTTGCTCCTGCTCACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAGATCTGAAAGAAGAAAAGTAAGCGGCTTGCTCCTGCTCACCC  649

seq1  CCAATGTCCTTGAGGAGAGGTTTAGTTTCTTGGCTCTTCCTGCCAAGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCCTTGAGGAGAGGTTTAGTTTCTTGGCTCTTCCTGCCAAGCAC  699

seq1  ACAGTGTTTTTAAAAAGGACAGAAGAGCCGGCAAATCCTCTCATCAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTTTAAAAAGGACAGAAGAGCCGGCAAATCCTCTCATCAAAGA  749

seq1  GGCATTGACTTTTAATTTTACAAATGTGCCTCTCTCTCCCATAAGGAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGACTTTTAATTTTACAAATGTGCCTCTCTCTCCCATAAGGAATA  799

seq1  GAGAGAATTC  809
      ||||||||||
seq2  GAGAGAATTC  809

seq1: chr3_50806644_50807381
seq2: B6Ng01-041G12.g_70_809

seq1  GAATTCCATCACGGGATTATCCTCCGTGACTCTGCAGTAGACTTCAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACGGGATTATCCTCCGTGACTCTGCAGTAGACTTCAATGG  50

seq1  TCATCCCCAAACAGGTCTTCAGAGAGGCCCAGACAGAGTACCTCCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCAAACAGGTCTTCAGAGAGGCCCAGACAGAGTACCTCCCTGTG  100

seq1  AACCTGCACAGCCTAGTAGGACAAGCCTCTCAGCAGCCGAGCTTCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCACAGCCTAGTAGGACAAGCCTCTCAGCAGCCGAGCTTCTGCTT  150

seq1  CATTAGCCCTGCTGGGCATGCCTGAACTGCTCTTTGAAGCAAGCCTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCCTGCTGGGCATGCCTGAACTGCTCTTTGAAGCAAGCCTGCGT  200

seq1  GCCAGCTATAGCCACATACAAATATCACTTACTGAGTGACCCTGGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTATAGCCACATACAAATATCACTTACTGAGTGACCCTGGAAGCA  250

seq1  AAGAAATTGTGCAGTTTGGGTGACTGGGATCAAAATTGAATCTGGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGTGCAGTTTGGGTGACTGGGATCAAAATTGAATCTGGACTGC  300

seq1  ATATTTATCGTCCTCTTACCAATATCCACACCATAAATCAAACTCTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCGTCCTCTTACCAATATCCACACCATAAATCAAACTCTAGCT  350

seq1  CTTTGTAGAAATGCTTTCAGGGATAAAGCGCCTTCATGCTATGCTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAAATGCTTTCAGGGATAAAGCGCCTTCATGCTATGCTTGTCA  400

seq1  CCCCCAAACAGTATATTTTCTTAAATTCAGAGCCAGGACCAGCAAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACAGTATATTTTCTTAAATTCAGAGCCAGGACCAGCAAACCAT  450

seq1  TCAACTAAATAAGGGAACACTCTTAATGCAACAAATGTTCCCCATAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAATAAGGGAACACTCTTAATGCAACAAATGTTCCCCATAATGC  500

seq1  CTAACTCCAATGAAAGCTGAATGAAAACACACATCCTTGCCCTCAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCAATGAAAGCTGAATGAAAACACACATCCTTGCCCTCAATATA  550

seq1  AAGAATGAGCAGGTTCTGTTTTTCTTTTTTAAAGAATGAGGGGCCGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGCAGGTTCTGTTTTTCTTTTTTAAAGAATGAGGGGCCGCTTA  600

seq1  GAGCTTCTCTCGCAGTCACAATGGAACAAATGACCTGCTC-TTTGTAAAG  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGCTTCTCTCGCAGTCACAATGGAACAAATGACCTGCTCTTTTGTAAAG  650

seq1  AGCAACCGCAGGAGCTGGGGTGGAGCTCAGTGGTGGATCTGGATGAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGCAGGAGCTGGGGTGGAGCTCAGTGGTGGATCTGGATGAGCAG  700

seq1  CAGCTTCCATCCCCAGCAGCCAAGAG-AAAAGCAACAGGA  738
      || ||||||||||||||||||||||| |||||||||||||
seq2  CATCTTCCATCCCCAGCAGCCAAGAGAAAAAGCAACAGGA  740