BAC Information

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BAC

Clone NameB6Ng01-041J16
Chromosome14 (Build37)3 (Build37)
Map Location 3,854,986 - 3,856,19741,058,743 - 41,059,297
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641
Downstream geneLOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J16.bB6Ng01-041J16.g
ACCDH868220DH868221
length1,192875
definitionDH868220|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J16, 5' end.DH868221|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,854,986 - 3,856,197)(41,058,743 - 41,059,297)
sequence
gaattctgtaaccaaagttgtgcactacaatggctcaccaatgaagatct
caaagtaacagtaataaaagggatttcatgagcagcaggggagaaattat
ttgaaaatctaaaacactaaagaaagtcaaggaactttttataaaccaaa
tgagacaatatgccatgtatttgaaattgtagtagccatattgagaaata
gagtttgatgctggagacctgccataaatgctaagtcagattgggcctga
ggtgtgctaggggactccctcaaaacaaagaaacaaactgaacaaagaaa
agacaagtggatgtcccttaggtcagagaaccattgtgaacacttttaac
taggagaagcagttagtaggtcagaaactattttaaattggggattcctt
gaaagtttctcagaagcaatgggcttccaccaggcttttcccctgagctg
cctttagtgggaaatgaggcagctttcctttctttgcctacacagtattt
ccacccatcctgggtttcctctacagctgcagatgctgttgagttgcagt
catttacttagcaggaaccagcttagactggctttgcttttcaaagctac
aggccttaggagctggctactgaattctgtgttgatcagagcagcctgca
aggctatgtttttataagtaacagatgcctgcactttgagaaattaattg
cctggctcctggatgtgaaggtgtgcaatgtgtctttaagcaatcagcat
cctttcaaagagtaagaaataaaacccgtcctcttccccaaataggcatg
ggccttagaccaccttttcacttcagtcacccttgactggattctgggaa
atgttgctatataaaacctgaaagtttaatgtgtaggttgaaatacagga
taggtgccaaagtgacctttcactatatagagtgtgggggaagagaacat
tagatcataatcacattttggtcccagcttgtgcctctgtcttcttactt
aagaaaagtctgaactgtgttaagcctttactagggtctttgtcttgact
gtctgggacaatagtcgactagacaaaggtcacttaaaggacatattttg
gttttggcgtgtatggcttctgttactctagacctgattcggactccgaa
ccaggccattgaagctattggtctctgaaagttctcgcagtg
gaattccttgatccacttagatttgaccttagtacaaggagataggaatg
gatcaattcccattcttctacatgttaaccgccagtagtgccagcaccat
tttttgaaaatgctgtcttttctccactggatggttttagctcccttgtc
aaggatcaaatgaccataggtgtgtgggttcatttctgtgtattcaattt
tattccattggtctacttgtctatcgttataccaagaccatgcaattttt
gatcacaatgctctgtagtacagctttaggtcaggctaccaacaacaatt
tttaaaaaaccttctgagggatggaattacaagcttgtaccaaatctggt
caacttttgtatgtatttccaccagaggttcttttatcctggagaatggt
ttttgctatcctaggttttttgtaattccagatgaatttgcagattgccc
tttctaattcattgaagaattgagttggaattttgatgaagattgcattg
aatctgtagattgcatttgacaagatagccatttttactatattgatcct
gccaatccatgagcatagaagatctttccatcttctgagatcttctttaa
tttctttcttcagagacttgaagttcttatcatacagatctttttacttc
cttagttagagtcacaccaaggtattttctattggtttttactcttgtga
acagtgttgtttccctaattttctttctcagcccatttcaaaagaccaag
tcagaatcagtgtcaatctcttactccctgcagataaggatgttagttag
ctcttagctgttgctctagcactaggcctgcctgtctgcggccatacttt
caaccatgatgacctttggactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_3854986_3856197
seq2: B6Ng01-041J16.b_44_1235

seq1  GAATTCTGTAACCAAAGTTGTGCACTACAATGGCTCACCAATGAAGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACCAAAGTTGTGCACTACAATGGCTCACCAATGAAGATCT  50

seq1  CAAAGTAACAGTAATAAAAGGGATTTCATGAGCAGCAGGGGAGAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACAGTAATAAAAGGGATTTCATGAGCAGCAGGGGAGAAATTAT  100

seq1  TTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCAAA  150

seq1  TGAGACAATATGCCATGTATTTGAAATTGTAGTAGCCATATTGAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATATGCCATGTATTTGAAATTGTAGTAGCCATATTGAGAAATA  200

seq1  GAGTTTGATGCTGGAGACCTGCCATAAATGCTAAGTCAGATTGGGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGATGCTGGAGACCTGCCATAAATGCTAAGTCAGATTGGGCCTGA  250

seq1  GGTGTGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGAAA  300

seq1  AGACAAGTGGATGTCCCTTAGGTCAGAGAACCATTGTGAACACTTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTGGATGTCCCTTAGGTCAGAGAACCATTGTGAACACTTTTAAC  350

seq1  TAGGAGAAGCAGTTAGTAGGTCAGATACTATTTTAAATTGGGGATTCCTT  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGAGAAGCAGTTAGTAGGTCAGAAACTATTTTAAATTGGGGATTCCTT  400

seq1  GAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGCTG  450

seq1  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTATTT  500

seq1  TCAGTCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCAGT  550
       ||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCAGT  550

seq1  CATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGCTAC  600

seq1  AGGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGTTCAGAGCAGCCTGCA  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCCTTAGGAGCTGGCTACTGAATTCTGTGTTGATCAGAGCAGCCTGCA  650

seq1  AGGCTATGTTTTTATAAGTAACAGATGCCTGCACTTTGAGAAATTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGTTTTTATAAGTAACAGATGCCTGCACTTTGAGAAATTAATTG  700

seq1  CCTGGCTCCTGGATGTGAAGGTGTGCAATGTGTCTTTAAGCAATCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCTGGATGTGAAGGTGTGCAATGTGTCTTTAAGCAATCAGCAT  750

seq1  CCTTTCAAAGAGTAAGAAATAAAACCCGTCCTCTTCCCCAAATAGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAAGAGTAAGAAATAAAACCCGTCCTCTTCCCCAAATAGGCATG  800

seq1  GGCCTTAGACCACC-TTTCACTTCAGTCACCCTTGACTGGATTCTGGGAA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCCTTAGACCACCTTTTCACTTCAGTCACCCTTGACTGGATTCTGGGAA  850

seq1  ATGTTGCTATATAAAACCTGAAAGTTTAATGTGTAGGTTGAAATACAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTATATAAAACCTGAAAGTTTAATGTGTAGGTTGAAATACAGGA  900

seq1  TAGCTGCCAAAGTGACCTTTCACTATATAGAGTGT-GGGGAAGAGAACAT  948
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGGTGCCAAAGTGACCTTTCACTATATAGAGTGTGGGGGAAGAGAACAT  950

seq1  TAGAATCATAATCACATTTTGGTCCCAGCTTGTGCCCTCTGTCTTCTTTA  998
      ||| |||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAG-ATCATAATCACATTTTGGTCCCAGCTTGTG-CCTCTGTCTTC-TTA  997

seq1  CATTAAAAGGAAAAGTCTGAACTGTGTTAGGCCTTTTACTAGGGGTCTTT  1048
      | ||||   |||||||||||||||||||| ||| ||||||| ||||||||
seq2  C-TTAA---GAAAAGTCTGAACTGTGTTAAGCC-TTTACTA-GGGTCTTT  1041

seq1  GTCTTGACTTGTCTGTGACCAAATAGTCAGACTAAGACAAAGGTCACTAA  1098
      |||||||| |||||| |||  ||||||| |||| |||||||||||||| |
seq2  GTCTTGAC-TGTCTGGGAC--AATAGTC-GACT-AGACAAAGGTCACTTA  1086

seq1  AAGGACATTATTTTGGTTTTGGCCGTGTATAGGCTTTCTG-TACTCTAGG  1147
      ||||||| |||||||||||||| ||||||| ||| ||||| |||||||| 
seq2  AAGGACA-TATTTTGGTTTTGG-CGTGTAT-GGC-TTCTGTTACTCTAGA  1132

seq1  CACTGATCTGGATCTCCGACCAAGGCCATTTGATGCTATTGTTTCTTAGA  1197
      | |||||  ||| |||||| | |||||| |||| |||||||  |||  ||
seq2  C-CTGATTCGGA-CTCCGAACCAGGCCA-TTGAAGCTATTG-GTCTCTGA  1178

seq1  AAGTTCTCGGCAGTG  1212
      |||||||| ||||||
seq2  AAGTTCTC-GCAGTG  1192

seq1: chr3_41058743_41059297
seq2: B6Ng01-041J16.g_172_801 (reverse)

seq1  GGCTGAGAAAG-AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT  49
      ||||||||||| ||||||||||||||||||  ||| ||| ||| | ||  
seq2  GGCTGAGAAAGAAAATTAGGGAAACAACACTGTTCACAAGAGTAAAAACC  50

seq1  AATATAAAATATCTTGGCATGACTCTAACTAAGGAAGT-GAAAGATCTGT  98
      |||| |||||| |||||  |||||||||||||||||||  ||||||||||
seq2  AATAGAAAATACCTTGGTGTGACTCTAACTAAGGAAGTAAAAAGATCTGT  100

seq1  ATGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGA  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGA  150

seq1  AGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAA  198
      |||||||||||||| | |||||||||||||||||||||||| || |||||
seq2  AGATGGAAAGATCTTCTATGCTCATGGATTGGCAGGATCAATATAGTAAA  200

seq1  AATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCA  248
      ||||||||||||| |||| ||||||||||||||||||||||||  |||||
seq2  AATGGCTATCTTGTCAAATGCAATCTACAGATTCAATGCAATCTTCATCA  250

seq1  AAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTC  298
      |||||||||||||||||||||| ||||| ||||| |||||||||||||||
seq2  AAATTCCAACTCAATTCTTCAATGAATTAGAAAGGGCAATCTGCAAATTC  300

seq1  ATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAA  348
      ||||||||| |||||||||||||||||||||||||  ||||| |||||||
seq2  ATCTGGAATTACAAAAAACCTAGGATAGCAAAAACCATTCTCCAGGATAA  350

seq1  CAGAACCTCTGGTGGAA--------------TCACCA-------------  371
       ||||||||||||||||              | ||||             
seq2  AAGAACCTCTGGTGGAAATACATACAAAAGTTGACCAGATTTGGTACAAG  400

seq1  ----------------------------------------------TGCC  375
                                                     |||
seq2  CTTGTAATTCCATCCCTCAGAAGGTTTTTTAAAAATTGTTGTTGGTAGCC  450

seq1  TGACCTAAAGCTTTACTACAGAGCAATTGTGAT-AAAAACTGCATGGTAC  424
      |||||||||||| ||||||||||| |||||||| ||||| ||||||||  
seq2  TGACCTAAAGCTGTACTACAGAGC-ATTGTGATCAAAAATTGCATGGTCT  499

seq1  TGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGA  474
      |||||||  || ||||||| |||||||||||||| ||||||| || ||||
seq2  TGGTATAACGATAGACAAGTAGACCAATGGAATAAAATTGAATACACAGA  549

seq1  AACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  524
      || ||| ||||||||||||||||| |||||| | ||||||||||||||||
seq2  AATGAACCCACACACCTATGGTCATTTGATCCTTGACAAGGGAGCTAAAA  599

seq1  CCATCCAGTGGAAAAAAGACAGCATTTTCAA  555
      |||||||||||| ||||||||||||||||||
seq2  CCATCCAGTGGAGAAAAGACAGCATTTTCAA  630