BAC Information

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BAC

Clone NameB6Ng01-041N18
Chromosome3 (Build37)
Map Location 113,529,840 - 113,660,403
singlet/doubletdoublet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041N18.bB6Ng01-041N18.g
ACCDH868395DH868396
length1,1451,063
definitionDH868395|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N18, 5' end.DH868396|Mus musculus domesticus DNA, BAC clone: B6Ng01-041N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,659,219 - 113,660,403)(113,529,840 - 113,530,911)
sequence
gaattcatacatctattcacttttctttctttttcattttgattttttaa
ttttatttttatacagtatctctgtgctgccctggtagccccgtactaaa
tatgcacatgtatattcttctaggtctttctaaaatgtctaataaattca
tatggactaatttattttctgacatctctttcagagaacattccttttgt
tctttgtaattttgtttcatttaagacaaattctggacatccttaaagat
tccaagaaattttgtctgtgataatttctcacttctacaggtttacagcc
acaacatcataccatttatacagtcatgtaatattcacctaattatgcca
cattagtctttaagaagacattttctccattttatagctgagcagttttt
gaaagcatcaacctttttacagcattatatgccattgttttgatacactg
acgtatattttatatgacaactatactgaagtgaaaaaaatttctaaaag
actccataaattagtgttaggcacagaccatctagattaaccctaagccg
gttagcacaaaatagttatagctatggaatttgtgaaatttcagttttgc
tctttatataaaagtcactcatgactatttttgtggcaatataatcttag
aaaatttattctcaaattcatgtggcatcatcatttattatgtaagtttt
gttattttttctttaccctgttttcctgagtttatatctactacaagaca
attagaaaagcaataatatcttttaatatgatctttagaatacattatat
tcagtgtgaatttatagctaagtatgctagactcataatacagagggaac
actctctcaagtattttcttagacaagttttacagaaagaaagagagaga
gagagagagagagagagagagagagagagagagaaaagaagctggatgca
gtgtgtggtgtactatgctatagtctctctgtgtgtcttttctctgtctc
tcctggtccctctgggttcatctctgtcttctggtccctggtcctcctat
cccatcccctcggcctgccgcccccccaatcacatattttaatcctcctg
gaacatagtagctgctctgaagattcacttcactggtagcaggct
gaattcaacataaaaaggaatggcagatgacagaaaaagtatgaagccat
ctatgcttctctacctgtctttctacattagctaccaatttgccaggtca
tacatttgtcattaaaatattaaatattgaaaaatcatggctttgataga
tgagttttaattgagtacatgaagagaataggaaagttgagacctaaagc
atctttatctctttgtttattttttattctccaaccttttttccctactt
tctcccctggaatccaccaatcttcctcctctttctttagtaggaaaata
ttattacatggcttccttatgtttacctttctcaaggaagctcctctgat
atcagaatagctattctttctcctttaaatattaaataagactgaaggag
gcagatgtaggtgaatttctgtgatttagacaccaacctgagagtgagtt
ccagatcagccacagctattcaatagaactctgtcttgaaaaaacaaaac
agtgataatattttatcacacatatttaaaagaaagttggaagctaccaa
agcttattgctctgaacttatcaggagagctaacttcatgctcagttaac
taaaatagaaaagacaaagtgtcaaagtcctacagattctacttttctta
tattttgtataccagaaatatcaaaacattccagagatcaaattatgagt
tgcaattcaatattatatataagtgctgtataaacctcatgaatagaaat
ttacagattataaagcaattttgatgttatgtttgaaatgattttgtgaa
aaaatgtaatagtatattttgaactttatttaaatagtaaaaaacccaaa
gctgagataacataatatgtattattatcttaacttggttttattatttt
ttctgacatgtgacatctgtttaatgggttattttgctttcccagtgcta
actttattgtataaaccaaagccaccgttatcctatttgtctccatgtga
aaccacaggcatccttttaggttggtttctgtgaacaaataactactatc
tacctgtccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113659219_113660403
seq2: B6Ng01-041N18.b_46_1190 (reverse)

seq1  AGCCTGCTCTACCAGTGAGTAGAATCTTCCAGAGCAGCTACTATGTTCCA  50
      ||||||  ||||||||||   ||||||| |||||||||||||||||||||
seq2  AGCCTG--CTACCAGTGAAGTGAATCTT-CAGAGCAGCTACTATGTTCCA  47

seq1  GGAGGAATAAAAATATGTGAATTTGAGAGAGACAGAGACAGAGACAGAGA  100
      ||||| || |||||||||||  ||| | | |    || | |||     | 
seq2  GGAGG-ATTAAAATATGTGA--TTGGGGGGGCGGCAGGCCGAG-----GG  89

seq1  GATAGAGATAGAGAGACACAGAGACACAGAGAGACAGAGATAGAAACACA  150
      ||| | ||||| |||   ||| ||| |||| ||||||||||   ||| ||
seq2  GAT-GGGATAG-GAGGACCAGGGAC-CAGA-AGACAGAGAT--GAACCCA  133

seq1  GAGAGACACAGGGAGAGACAGAGGAAAAAGACACACAGAGAGACTATTAG  200
      ||| ||| || ||||||||||||  ||||||||||||||||||||| |||
seq2  GAGGGAC-CA-GGAGAGACAGAG--AAAAGACACACAGAGAGACTA-TAG  178

seq1  CATTAGTACAACCACACACTGCATCCAGCTTTTCTTTTTTCTCTTCTCTT  250
      || |||||| |||||||||||||||||||  ||||||| |||| |||| |
seq2  CA-TAGTAC-ACCACACACTGCATCCAGC--TTCTTTTCTCTC-TCTC-T  222

seq1  CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCTTTT  300
      ||| |||| |||| |||| |||| |||| |||| ||||    |||| |||
seq2  CTC-TCTC-TCTC-TCTC-TCTC-TCTC-TCTC-TCTC----TTTC-TTT  260

seq1  CTGTAAAACTTGTCTAAGAAAATACTTGAGAGAGTGTTCCCTCTGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAACTTGTCTAAGAAAATACTTGAGAGAGTGTTCCCTCTGTATTA  310

seq1  TGAGTCTAGCATACTTAGCTATAAATTCACACTGAATATAATGTATTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTAGCATACTTAGCTATAAATTCACACTGAATATAATGTATTCTA  360

seq1  AAGATCATATTAAAAGATATTATTGCTTTTCTAATTGTCTTGTAGTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATATTAAAAGATATTATTGCTTTTCTAATTGTCTTGTAGTAGAT  410

seq1  ATAAACTCAGGAAAACAGGGTAAAGAAAAAATAACAAAACTTACATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCAGGAAAACAGGGTAAAGAAAAAATAACAAAACTTACATAATA  460

seq1  AATGATGATGCCACATGAATTTGAGAATAAATTTTCTAAGATTATATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATGCCACATGAATTTGAGAATAAATTTTCTAAGATTATATTGC  510

seq1  CACAAAAATAGTCATGAGTGACTTTTATATAAAGAGCAAAACTGAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATAGTCATGAGTGACTTTTATATAAAGAGCAAAACTGAAATTT  560

seq1  CACAAATTCCATAGCTATAACTATTTTGTGCTAACCGGCTTAGGGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTCCATAGCTATAACTATTTTGTGCTAACCGGCTTAGGGTTAAT  610

seq1  CTAGATGGTCTGTGCCTAACACTAATTTATGGAGTCTTTTAGAAATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGTCTGTGCCTAACACTAATTTATGGAGTCTTTTAGAAATTTTT  660

seq1  TTCACTTCAGTATAGTTGTCATATAAAATATACGTCAGTGTATCAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCAGTATAGTTGTCATATAAAATATACGTCAGTGTATCAAAACA  710

seq1  ATGGCATATAATGCTGTAAAAAGGTTGATGCTTTCAAAAACTGCTCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATATAATGCTGTAAAAAGGTTGATGCTTTCAAAAACTGCTCAGCT  760

seq1  ATAAAATGGAGAAAATGTCTTCTTAAAGACTAATGTGGCATAATTAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGAGAAAATGTCTTCTTAAAGACTAATGTGGCATAATTAGGTG  810

seq1  AATATTACATGACTGTATAAATGGTATGATGTTGTGGCTGTAAACCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACATGACTGTATAAATGGTATGATGTTGTGGCTGTAAACCTGTA  860

seq1  GAAGTGAGAAATTATCACAGACAAAATTTCTTGGAATCTTTAAGGATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGAAATTATCACAGACAAAATTTCTTGGAATCTTTAAGGATGTC  910

seq1  CAGAATTTGTCTTAAATGAAACAAAATTACAAAGAACAAAAGGAATGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGTCTTAAATGAAACAAAATTACAAAGAACAAAAGGAATGTTC  960

seq1  TCTGAAAGAGATGTCAGAAAATAAATTAGTCCATATGAATTTATTAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGAGATGTCAGAAAATAAATTAGTCCATATGAATTTATTAGACA  1010

seq1  TTTTAGAAAGACCTAGAAGAATATACATGTGCATATTTAGTACGGGGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAAGACCTAGAAGAATATACATGTGCATATTTAGTACGGGGCTA  1060

seq1  CCAGGGCAGCACAGAGATACTGTATAAAAATAAAATTAAAAAATCAAAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGCACAGAGATACTGTATAAAAATAAAATTAAAAAATCAAAAT  1110

seq1  GAAAAAGAAAGAAAAGTGAATAGATGTATGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAGAAAAGTGAATAGATGTATGAATTC  1145

seq1: chr3_113529840_113530911
seq2: B6Ng01-041N18.g_68_1130

seq1  GAATTCAACATAAAAAGGAATGGCAGATGACAGAAAAAGTATGAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATAAAAAGGAATGGCAGATGACAGAAAAAGTATGAAGCCAT  50

seq1  CTATGCTTCTCTACCTGTCTTTCTACATTAGCTACCAATTTGCCAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCTCTACCTGTCTTTCTACATTAGCTACCAATTTGCCAGGTCA  100

seq1  TACATTTGTCATTAAAATATTAAATATTGAAAAATCATGGCTTTGATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGTCATTAAAATATTAAATATTGAAAAATCATGGCTTTGATAGA  150

seq1  TGAGTTTTAATTGAGTACATGAAGAGAATAGGAAAGTTGAGACCTAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTAATTGAGTACATGAAGAGAATAGGAAAGTTGAGACCTAAAGC  200

seq1  ATCTTTATCTCTTTGTTTATTTTTTATTCTCCAACCTTTTTTCCCTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCTCTTTGTTTATTTTTTATTCTCCAACCTTTTTTCCCTACTT  250

seq1  TCTCCCCTGGAATCCACCAATCTTCCTCCTCTTTCTTTAGTAGGAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTGGAATCCACCAATCTTCCTCCTCTTTCTTTAGTAGGAAAATA  300

seq1  TTATTACATGGCTTCCTTATGTTTACCTTTCTCAAGGAAGCTCCTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATGGCTTCCTTATGTTTACCTTTCTCAAGGAAGCTCCTCTGAT  350

seq1  ATCAGAATAGCTATTCTTTCTCCTTTAAATATTAAATAAGACTGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATAGCTATTCTTTCTCCTTTAAATATTAAATAAGACTGAAGGAG  400

seq1  GCAGATGTAGGTGAATTTCTGTGATTTAGACACCAACCTGAGAGTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTAGGTGAATTTCTGTGATTTAGACACCAACCTGAGAGTGAGTT  450

seq1  CCAGATCAGCCACAGCTATTCAATAGAACTCTGTCTTGAAAAAACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAGCCACAGCTATTCAATAGAACTCTGTCTTGAAAAAACAAAAC  500

seq1  AGTGATAATATTTTATCACACATATTTAAAAGAAAGTTGGAAGCTACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAATATTTTATCACACATATTTAAAAGAAAGTTGGAAGCTACCAA  550

seq1  AGCTTATTGCTCTGAACTTATCAGGAGAGCTAACTTCATGCTCAGTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTGCTCTGAACTTATCAGGAGAGCTAACTTCATGCTCAGTTAAC  600

seq1  TAAAATAGAAAAGACAAAGTGTCAAAGTCCTACAGATTCTACTTTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAAAAGACAAAGTGTCAAAGTCCTACAGATTCTACTTTTCTTA  650

seq1  TATTTTGTATACCAGAAATATCAAAACATTCCAGAGATCAAATTATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTATACCAGAAATATCAAAACATTCCAGAGATCAAATTATGAGT  700

seq1  TGCAATTCAATATTATATATAAGTGCTGTATAAACCTCATGAATAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCAATATTATATATAAGTGCTGTATAAACCTCATGAATAGAAAT  750

seq1  TTACAGATTATAAAGCAATTTTGATGTTATGTTTGAAATGATTTTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTATAAAGCAATTTTGATGTTATGTTTGAAATGATTTTGTGAA  800

seq1  AAAATGTAATAGTATATTTTGAACTTTATTTAAATAGTAAAAAACCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAATAGTATATTTTGAACTTTATTTAAATAGTAAAAAACCCAAA  850

seq1  GCTGAGATAACATAATATGTATTATTATCTTAACTTGGTTTTTATTATTT  900
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GCTGAGATAACATAATATGTATTATTATCTTAACTTGG-TTTTATTA-TT  898

seq1  TTTTCTGACATGTGACATCTTGTTTTAATGGGTTATTTTGCTTTCCCAGT  950
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TTTTCTGACATGTGACATCT--GTTTAATGGGTTATTTTGCTTTCCCAGT  946

seq1  GCTAACTTTATTGTATAAACCAAAGCCACCGTTATCCTATTTGTCTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTTTATTGTATAAACCAAAGCCACCGTTATCCTATTTGTCTCCAT  996

seq1  GTTGAAACCCACAAGCATCCTTTTAGGTTGGTTTTCTGTGAACAAATAAA  1050
      | ||||| ||||| ||||||||||||||||| ||||||||||||||| ||
seq2  G-TGAAA-CCACAGGCATCCTTTTAGGTTGG-TTTCTGTGAACAAAT-AA  1042

seq1  CTACATATCTACCTGTCCACAG  1072
      |||| |||||||||||||||||
seq2  CTAC-TATCTACCTGTCCACAG  1063