BAC Information

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BAC

Clone NameB6Ng01-042C13
Chromosome3 (Build37)
Map Location 109,367,986 - 109,533,308
singlet/doubletdoublet
Overlap geneVav3
Upstream geneTaf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C13.bB6Ng01-042C13.g
ACCDH868614DH868615
length1,113144
definitionDH868614|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C13, 5' end.DH868615|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,367,986 - 109,369,103)(109,533,165 - 109,533,308)
sequence
gaattctcagaattaattatgagtatgaaatgtcaagaagctacctagca
gacttctattttcttgcagaccaggctttgtaacttagaagccccatctt
caggatgtaggggctctatgtgatccctgcataagcaccttcttcccctg
tccctcagcaggtgccctctgaaaattgggagacatcacattcacccatc
cttggactagtgtaggcaattgttgaggacagactttcaatcttagcctg
gtagatctgtttgtgagtgtggtagagtagatactatgttgggattataa
gcaagttattctaatgttctcttccctggcctgccgagaatctctggctg
atatgttttgtagttaggattcactgcttgaagaagttcagcaatttgtt
taccctaacttctgcagcatctgagacaacacaggagtaaggaagagagg
aggaagcccaagatgcatttggagctagagatgtgctttacttgagaggg
aattctgtatcgaggggagtgtgttccttggtgaactttactttgagaaa
aattaccctagggtaattttgttgtcaataatgttgacttaaggcaaagt
taaatgatatataatcatttcccatgtaacataaatcatagcttgagaat
cactcttattttatagtggtttctagttccaaagcttcacccagtctgcc
tgtgttctcagggtagaaagggacattatggctggctagtgtagtaggca
ggagtccattcatagttcatggtgccatggtgcatgcgaatggtggcatt
gtaataaaccatggacacctgtggacagagaacatggtagttccatttga
atggcccataatcatagaaagaagtggggagtgaagaattattatacagc
atgatggagtagaccaggctctactgaagggctacaaactcttcccccta
cttctgttgtcattgctgcatcccctttagtccctgaaggctcatataag
cccttatcgctcagttggccctgggaggctgttagcccatcctgaaactc
tcctttaacctcaatgatactcaatgcaccctttgaaaacagacttggtt
ctttcacttaagt
agggttctctgatagggagctgaagtgtctaccctcaaagaagaagctat
tggctcaatgttaaggaaaataagtcgaatcccaggatgtgctgaaggtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109367986_109369103
seq2: B6Ng01-042C13.b_45_1157

seq1  GAATTCTCAGAATTAATTATGAGTATGAAATGTCAAGAAGCTACCTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAATTAATTATGAGTATGAAATGTCAAGAAGCTACCTAGCA  50

seq1  GACTTCTATTTTCTTGCAGACCAGGCTTTGTAACTTAGAAGCCCCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTATTTTCTTGCAGACCAGGCTTTGTAACTTAGAAGCCCCATCTT  100

seq1  CAGGATGTAGGGGCTCTATGTGATCCCTGCATAAGCACCTTCTTCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTAGGGGCTCTATGTGATCCCTGCATAAGCACCTTCTTCCCCTG  150

seq1  TCCCTCAGCAGGTGCCCTCTGAAAACTGGGAGACATCACATTCACCCATC  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCCTCAGCAGGTGCCCTCTGAAAATTGGGAGACATCACATTCACCCATC  200

seq1  CTTGGACTAGTGTAGGCAATTGTTGAGGACAGACTTTCAATCTTAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTAGTGTAGGCAATTGTTGAGGACAGACTTTCAATCTTAGCCTG  250

seq1  GTAGATCTGTTTGTGAGTGTGGTAGAGTAGATACTATGTTGGGATTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTGTTTGTGAGTGTGGTAGAGTAGATACTATGTTGGGATTATAA  300

seq1  GCAAGTTATTCTAATGTTCTCTTCCCTGGCCTGCCGAGAATCTCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTATTCTAATGTTCTCTTCCCTGGCCTGCCGAGAATCTCTGGCTG  350

seq1  ATATGTTTTGTAGTTAGGATTCACTGCTTGAAGAAGTTCAGCAATTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTGTAGTTAGGATTCACTGCTTGAAGAAGTTCAGCAATTTGTT  400

seq1  TACCCTAACTTCTGCAGCATCTGAGACAACACAGGAGTAAGGAAGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACTTCTGCAGCATCTGAGACAACACAGGAGTAAGGAAGAGAGG  450

seq1  AGGAAGCCCAAGATGCATTTGGAGCTAGAGATGTGCTTTACTTGAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCAAGATGCATTTGGAGCTAGAGATGTGCTTTACTTGAGAGGG  500

seq1  AATTCTGTATCGAGGGGAGTGTGTTCCTTGGTGAACTTTACTTTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTATCGAGGGGAGTGTGTTCCTTGGTGAACTTTACTTTGAGAAA  550

seq1  AATTACCCTAGGGTAATTTTGTTGTCAATAATGTTGACTTAAGGCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCTAGGGTAATTTTGTTGTCAATAATGTTGACTTAAGGCAAAGT  600

seq1  TAAATGATATATAATCATTTCCCATGTAACATAAATCATAGCTTGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATATATAATCATTTCCCATGTAACATAAATCATAGCTTGAGAAT  650

seq1  CACTCTTATTTTATAGTGGTTTCTAGTTCCAAAGCTTCACCCAGTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTATTTTATAGTGGTTTCTAGTTCCAAAGCTTCACCCAGTCTGCC  700

seq1  TGTGTTCTCAGGGTAGAAAGGGACATTATGGCTGGCTAGTGTAGTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCAGGGTAGAAAGGGACATTATGGCTGGCTAGTGTAGTAGGCA  750

seq1  GGAGTCCATTCATAGTTCATGGTGCCATGGTGCATGCGAATGGTGGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATTCATAGTTCATGGTGCCATGGTGCATGCGAATGGTGGCATT  800

seq1  GTAATAAACCATGGACACCTGTGGACAGAGAACATGGTAGTTCCATTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAACCATGGACACCTGTGGACAGAGAACATGGTAGTTCCATTTGA  850

seq1  ATGGCCCATAATCATAGAAAGAAGTGGGGAAGTGAAGAATTATTATACAG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGCCCATAATCATAGAAAGAAGTGGGG-AGTGAAGAATTATTATACAG  899

seq1  CATGATGGAGTAGACCAGGCTCTACTGAA-GGCTACAAACCTCTTCCCCC  949
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  CATGATGGAGTAGACCAGGCTCTACTGAAGGGCTACAAA-CTCTTCCCCC  948

seq1  TAC-TCTGTTGTCATTGCTGCATCCACTTGAGTTCCCTGAAAGTCTCAAT  998
      ||| ||||||||||||||||||||| ||| || |||||| ||| ||| ||
seq2  TACTTCTGTTGTCATTGCTGCATCCCCTTTAG-TCCCTG-AAGGCTC-AT  995

seq1  AT-AGCCCTTATCTCTCAGTTTTGCTCATGGGATGCTGTTAGCCACTCCT  1047
      || |||||||||| |||||  |||  | ||||| ||||||||||  ||||
seq2  ATAAGCCCTTATCGCTCAG--TTGGCCCTGGGAGGCTGTTAGCCCATCCT  1043

seq1  GATACTCTCTTTCATACTCCATTAT-CTCACATGCCACCTTTGAAGATCA  1096
      || |||||| || |  ||| || || |||| ||||  |||||||| | ||
seq2  GAAACTCTCCTTTAACCTCAATGATACTCA-ATGCACCCTTTGAA-AACA  1091

seq1  GACTTGTTTCTTTCACTTAAGT  1118
      |||||| |||||||||||||||
seq2  GACTTGGTTCTTTCACTTAAGT  1113

seq1: chr3_109533165_109533308
seq2: B6Ng01-042C13.g_73_216 (reverse)

seq1  TCTGCACACACACACACACACACACACACACACACACACACACACACCTT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCACACACACACACACACACACACACACACACACACACACACCTT  50

seq1  CAGCACATCCTGGGATTCGACTTATTTTCCTTAACATTGAGCCAATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATCCTGGGATTCGACTTATTTTCCTTAACATTGAGCCAATAGCT  100

seq1  TCTTCTTTGAGGGTAGACACTTCAGCTCCCTATCAGAGAACCCT  144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGAGGGTAGACACTTCAGCTCCCTATCAGAGAACCCT  144