BAC Information

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BAC

Clone NameB6Ng01-042E13
Chromosome3 (Build37)
Map Location 121,782,195 - 121,927,629
singlet/doubletdoublet
Overlap geneAbca4, EG668788, LOC626807
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29
Downstream geneLOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E13.bB6Ng01-042E13.g
ACCDH868707DH868708
length1,0311,108
definitionDH868707|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E13, 5' end.DH868708|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,782,195 - 121,783,224)(121,926,520 - 121,927,629)
sequence
gaattcaaggaagagtgagccctgaggaagttatcttgtaatttatagcc
acatggttaagaagctggtgggtggattcagagggaggcttgctgggagc
cagctcgttctgagatgtaaatggcttctccaaaacatgtgtgccttagc
atttatcgtcccgtggaaaataactaggaaggagaatgcaggcgggccac
taagcacacaccagaccattgcttctcaaccttcctaatgctgtgaccct
ttaatatggttcctcacgctgtggtgaccccaaccataaaattatttcat
tgctccttcataactgtaatctttctactgtgatgaatcgcaatgtaaat
atctgatattcagggtgtctgatctgtgacccctgtgaacctcccctttg
gaggtcaaatgacacgtgcttagcaaatgtatgattggtggattattatc
caaatgattagcaagattaagaaaagaaagtgttgaccagacacaaaaat
gcatctcacgccctggccccaggctcctgctcctccagatcctaatctcg
tttttaccaggttctctatccaggctgatcgatgtctggcttcccattcc
tctctccacctggttgcagagtccccaacccattctgtgcacaagatact
gccctcaactcatccttacaatcatctcagacccttgtcaactcaagggt
caccttcccaataggagtagaacagtctactgcctccctggcagagatac
tgctcacaggacccaaaatctcaggagatcctatctcttctctacaacac
gcattcatggtttttcccttcctctgggagtcttgtctggtgtcactgaa
ccagcaatcagaattactctgctgtattttctgtaccatgagtctgtctg
ttattgactggctcagcaggaaacttggaataggagcctttgatttttct
ggatcaggttaaagaattttgtttccgaaattgacattataagaactaac
agttgttgaggaaagtgtagcctggcgaaca
gaattcttgcttgatatgctgaatggtggcacagacttctgctttgaggt
cactggaaacacagaaacagtggtatgtgatcattggaagtaaaaattac
cggtatattacaccagtggatgtttaatattttaatgtaatgaacatcct
acatttcgttccacatttctctaatttccttgtgggcccccacatgccca
tcaggacgtggccaccagagccctgtcagttcgctgtcccactcaaatga
caagtctgctcctgagatcgtttttccctctaagttcccgcacatggctc
cttcaattaaccataaggaattcccactcagagactgactgcatgacaac
aagtagcctgagatgactgtcattttcaaggcagataacttagatgagat
caggttccaccaaattgtcctagaaaacagtgagcttcttaatttcatta
agatctttcgtgttagatgtgagcttctgagacaagaaaagcctgtcctc
atttaatgggtcattgccaagaaactggaggaaaccagtagggatttttc
tgcctgaacatggctcatacaaggagataaaagtgaaaggcagactctga
ggagagcttgcctttggtctctgatgcatttttgttgcatggaagttacc
tggaaagcaaagaggagtccggagtcctttctaaccttggtctttattcc
agcattgaaaatttcttacagttcactgtagataatcctctcacgtgagt
aaatacacagcaaagcctttatcccagtcttgttctgagaaatagccttg
gaaatcactaatgggaagatggcaggtggtcacttttgttagcatgtcat
ctcatacaaacatccaaatgtcccctttgatatgtaggagaaaaacatca
actcaaacgaaccacccacgtactatcagtctttataaaataatcataaa
tttaccacaactatactgtcttcctctttatccatttgttgatcctacaa
tgcctagtgctatgctaggcagaaacaatggtcttagctacgttatagaa
catttttccttatatcgataatgtttatcaaaatgaaatagaaaatccga
aaaggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121782195_121783224
seq2: B6Ng01-042E13.b_46_1076

seq1  GAATTCAAGGAAGAGTGAGCCCTGAGGAAGTTATCTTGTAATTTATAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAGAGTGAGCCCTGAGGAAGTTATCTTGTAATTTATAGCC  50

seq1  ACATGGTTAAGAAGCTGGTGGGTGGATTCAGAGGGAGGCTTGCTGGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTAAGAAGCTGGTGGGTGGATTCAGAGGGAGGCTTGCTGGGAGC  100

seq1  CAGCTCGTTCTGAGATGTAAATGGCTTCTCCAAAACATGTGTGCCTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGTTCTGAGATGTAAATGGCTTCTCCAAAACATGTGTGCCTTAGC  150

seq1  ATTTATCGTCCCGTGGAAAATAACTAGGAAGGAGAATGCAGGCGGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCGTCCCGTGGAAAATAACTAGGAAGGAGAATGCAGGCGGGCCAC  200

seq1  TAAGCACACACCAGACCATTGCTTCTCAACCTTCCTAATGCTGTGACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACACACCAGACCATTGCTTCTCAACCTTCCTAATGCTGTGACCCT  250

seq1  TTAATATGGTTCCTCACGCTGTGGTGACCCCAACCATAAAATTATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGGTTCCTCACGCTGTGGTGACCCCAACCATAAAATTATTTCAT  300

seq1  TGCTCCTTCATAACTGTAATCTTTCTACTGTGATGAATCGCAATGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCATAACTGTAATCTTTCTACTGTGATGAATCGCAATGTAAAT  350

seq1  ATCTGATATTCAGGGTGTCTGATCTGTGACCCCTGTGAACCTCCCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTCAGGGTGTCTGATCTGTGACCCCTGTGAACCTCCCCTTTG  400

seq1  GAGGTCAAATGACACGTGCTTAGCAAATGTATGATTGGTGGATTATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAATGACACGTGCTTAGCAAATGTATGATTGGTGGATTATTATC  450

seq1  CAAATGATTAGCAAGATTAAGAAAAGAAAGTGTTGACCAGACACAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATTAGCAAGATTAAGAAAAGAAAGTGTTGACCAGACACAAAAAT  500

seq1  GCATCTCACGCCCTGGCCCCAGGCTCCTGCTCCTCCAGATCCTAATCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCACGCCCTGGCCCCAGGCTCCTGCTCCTCCAGATCCTAATCTCG  550

seq1  TTTTTACCAGGTTCTCTATCCAGGCTGATCGATGTCTGGCTTCCCATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCAGGTTCTCTATCCAGGCTGATCGATGTCTGGCTTCCCATTCC  600

seq1  TCTCTCCACCTGGTTGCAGAGTCCCCAACCCATTCTGTGCACAAGATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACCTGGTTGCAGAGTCCCCAACCCATTCTGTGCACAAGATACT  650

seq1  GCCCTCAACTCATCCTTACAATCATCTCAGACCCTTGTCAACTCAAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAACTCATCCTTACAATCATCTCAGACCCTTGTCAACTCAAGGGT  700

seq1  CACCTTCCCAATAGGAGTAGAACAGTCTACTGCCTCCCTGGCAGAGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCCAATAGGAGTAGAACAGTCTACTGCCTCCCTGGCAGAGATAC  750

seq1  TGCTCACAGGACCCAAAATCTCAGGAGATCCTATCTCTTCTCTACAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAGGACCCAAAATCTCAGGAGATCCTATCTCTTCTCTACAACAC  800

seq1  GCATTCATGGTTTTTCCCTTCCTCTGGGAGTCTTGTCTGGTGTCACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATGGTTTTTCCCTTCCTCTGGGAGTCTTGTCTGGTGTCACTGAA  850

seq1  CCAGCAATCAGAATTACTCTGCTGTATTTTCTGTTACCATGAGTCTGTCT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAGCAATCAGAATTACTCTGCTGTATTTTCTG-TACCATGAGTCTGTCT  899

seq1  GTTATTGACTGGCTCAGCAGGGAAACTTGGAATAGGAGCCTTTGATTTTT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTATTGACTGGCTCAGCA-GGAAACTTGGAATAGGAGCCTTTGATTTTT  948

seq1  CTGGATCAGGTTAAAGAATTTTGTTTCCGAAAGTGACATTAT-AGAACT-  998
      |||||||||||||||||||||||||||||||| ||||||||| |||||| 
seq2  CTGGATCAGGTTAAAGAATTTTGTTTCCGAAATTGACATTATAAGAACTA  998

seq1  ACAGTTGTAGAGGAAAGTGTAG-CTTGCGAACA  1030
      |||||||| ||||||||||||| || |||||||
seq2  ACAGTTGTTGAGGAAAGTGTAGCCTGGCGAACA  1031

seq1: chr3_121926520_121927629
seq2: B6Ng01-042E13.g_68_1175 (reverse)

seq1  GTTCC-TTTCTGGTTTTCTATTTCATTTTTGAT-AACATTATCGATATTA  48
      ||||| |||| | |||||||||||| ||||||| |||||||||||||| |
seq2  GTTCCTTTTCGGATTTTCTATTTCA-TTTTGATAAACATTATCGATATAA  49

seq1  TG-AAGATGTTCTATAACGTAGCTAAGA-CATTGTTTCTGCCTAGCATAG  96
       | || |||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAAAATGTTCTATAACGTAGCTAAGACCATTGTTTCTGCCTAGCATAG  99

seq1  CACTAGGCATTGTAGGATTCAACAAATGGAATAAAGAGGAAGACAGTTAT  146
      ||||||||||||||||| ||||||||||| |||||||||||||||| |||
seq2  CACTAGGCATTGTAGGA-TCAACAAATGG-ATAAAGAGGAAGACAG-TAT  146

seq1  AGTTGTGGTAAAATTTATGATTATTTTTATAAAGACTGATAGTTACGTGG  196
      ||||||||| ||||||||||||| |||||||||||||||||| |||||||
seq2  AGTTGTGGT-AAATTTATGATTA-TTTTATAAAGACTGATAG-TACGTGG  193

seq1  GTGGTTCGTTTGAGTTGATGTTTTTCTCCTACATATCAAAGGGGACATTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCGTTTGAGTTGATGTTTTTCTCCTACATATCAAAGGGGACATTT  243

seq1  GGATGTTTGTATGAGATGACATGCTAAC-AAAGTGACCACCTGCCATCTT  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGATGTTTGTATGAGATGACATGCTAACAAAAGTGACCACCTGCCATCTT  293

seq1  CCCATTAGTGATTTCCAAGGCTATTTCTCAGAACAAGACTGGGATAAAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGTGATTTCCAAGGCTATTTCTCAGAACAAGACTGGGATAAAGG  343

seq1  CTTTGCTGTGTATTTACTCACGTGAGAGGATTATCTACAGTGAACTGTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTGTATTTACTCACGTGAGAGGATTATCTACAGTGAACTGTAA  393

seq1  GAAATTTTCAATGCTGGAATAAAGACCAAGGTTAGAAAGGACTCCGGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCAATGCTGGAATAAAGACCAAGGTTAGAAAGGACTCCGGACT  443

seq1  CCTCTTTGCTTTCCAGGTAACTTCCATGCAACAAAAATGCATCAGAGACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCTTTCCAGGTAACTTCCATGCAACAAAAATGCATCAGAGACC  493

seq1  AAAGGCAAGCTCTCCTCAGAGTCTGCCTTTCACTTTTATCTCCTTGTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGCTCTCCTCAGAGTCTGCCTTTCACTTTTATCTCCTTGTATG  543

seq1  AGCCATGTTCAGGCAGAAAAATCCCTACTGGTTTCCTCCAGTTTCTTGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTTCAGGCAGAAAAATCCCTACTGGTTTCCTCCAGTTTCTTGGC  593

seq1  AATGACCCATTAAATGAGGACAGGCTTTTCTTGTCTCAGAAGCTCACATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCATTAAATGAGGACAGGCTTTTCTTGTCTCAGAAGCTCACATC  643

seq1  TAACACGAAAGATCTTAATGAAATTAAGAAGCTCACTGTTTTCTAGGACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGAAAGATCTTAATGAAATTAAGAAGCTCACTGTTTTCTAGGACA  693

seq1  ATTTGGTGGAACCTGATCTCATCTAAGTTATCTGCCTTGAAAATGACAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGGAACCTGATCTCATCTAAGTTATCTGCCTTGAAAATGACAGT  743

seq1  CATCTCAGGCTACTTGTTGTCATGCAGTCAGTCTCTGAGTGGGAATTCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGGCTACTTGTTGTCATGCAGTCAGTCTCTGAGTGGGAATTCCT  793

seq1  TATGGTTAATTGAAGGAGCCATGTGCGGGAACTTAGAGGGAAAAACGATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTAATTGAAGGAGCCATGTGCGGGAACTTAGAGGGAAAAACGATC  843

seq1  TCAGGAGCAGACTTGTCATTTGAGTGGGACAGCGAACTGACAGGGCTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCAGACTTGTCATTTGAGTGGGACAGCGAACTGACAGGGCTCTG  893

seq1  GTGGCCACGTCCTGATGGGCATGTGGGGGCCCACAAGGAAATTAGAGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACGTCCTGATGGGCATGTGGGGGCCCACAAGGAAATTAGAGAAA  943

seq1  TGTGGAACGAAATGTAGGATGTTCATTACATTAAAATATTAAACATCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACGAAATGTAGGATGTTCATTACATTAAAATATTAAACATCCAC  993

seq1  TGGTGTAATATACCGGTAATTTTTACTTCCAATGATCACATACCACTGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAATATACCGGTAATTTTTACTTCCAATGATCACATACCACTGTT  1043

seq1  TCTGTGTTTCCAGTGACCTCAAAGCAGAAGTCTGTGCCACCATTCAGCAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTCCAGTGACCTCAAAGCAGAAGTCTGTGCCACCATTCAGCAT  1093

seq1  ATCAAGCAAGAATTC  1110
      |||||||||||||||
seq2  ATCAAGCAAGAATTC  1108