BAC Information

Click to search

BAC

Clone NameB6Ng01-042F01
Chromosome3 (Build37)
Map Location 41,059,224 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042F01.bB6Ng01-042F01.g
ACCDH868729DH868730
length9501,204
definitionDH868729|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F01, 5' end.DH868730|Mus musculus domesticus DNA, BAC clone: B6Ng01-042F01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagcaccatttttaatgggttaatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagaccctttcccaatctgttggtggcctt
tttgtcttattgacattgtcttttgccttgcagaagctttacagtttcat
gaggtcccatttgtcaattctcaatcttacagcgcaagccattgctgttc
tattcaggaattttttcccctgtgcccatatcttcaagtcgtttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatgaattcgc
attcttctagatgataacgaccagtcatgcaagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaaaatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcactttttatcacaattgc
tctgtcgtaaagctttagatcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagtta
aatttggagattgctttttctaattccttgaagatttgagttggaatttt
gatgggaattgcattgaatctgtagattgcttttggcaagatagccattt
gtacaatgttgattctgccaatccatgagcatgggagatctttccatctt
ctgagatctcctttaatgtctttcttcagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcatgccaagatattttatattat

gaattctctatcctctttatgtattgtctaatgtttggtgcaccaatcat
gtcaattcatgtgtcttttgtttggttgtctgagtgactgtttcgttgtc
tgaatgactgactgttttatgtttcatgttgaaaattaaataaataaata
aataaataaataaataaataaatggttaaaactttacctgctgaatcact
ctcagttgcacaaccgaggctgagaggcccctcactttagccaaaattca
agcacagcaggagaggtcctgctaaaaaacttgtctttaaagaaaaggag
tcttcaacctcttagttctaagacaaataagccgatagttgtttttccta
aaaagttctctgcaagtttgtgattattgtgtttagcaaattacaaagtg
ttttttatcttatagtatagctataaaaagtaaaattctttgatctaaat
ttataagatttgtgtagccacttcatttggtttttgactggtcttaaagg
tataaatatgatctacatatcttggtcatagaaaattggcttttaagtta
tttgggtatgattaaaaagatgtatcactggttataaagtgaacttaaaa
gtagtaactcagggccagagtcattttgaaacaaaagcacctggcataaa
ccagcccagagaactagtcctctaaagatacttctaaattgagatagcat
tttatgtaattcttatcctaaaagatagacttacaaagataaaattttaa
aacgatgtctctttaatggaacattaaagtctaaactgtcatacattaat
gaattgacagccaaattttgtaacgtgatagtgatgtttttagtattgat
ttttaagaaaaataattgtttaaaattgggtcttgctttccaaagttata
gatatattctaatattgcatggaaacttaaaattatggttaaattgccag
tgtcccatgactgcagtttgcagtttgattgaaagctagatttttactca
cccaaattaagattgttacagtgtatcatctatgagagtgctatggcgct
cgcttgggcattcagcttacaggcagcagagtactagattatcatcttgt
ggcagaataggccttcacgatcagttggctatggttgtgcctacgactaa
ggtacagatgttaaggttaggtctccttacaggaattggtctctaattgg
aatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-042F01.b_43_557 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATTTTCGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||| |||||||||||||||||||||||||||| |||  |||||| ||
seq2  GTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTTGCATGACTGGTCGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||| |||||||||||||||| ||||| ||||||||||||||||||||
seq2  TATCATCTAGAAGAATGCGAATTCATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      ||||||||||||||||||||||||| | ||||||||||||| ||||||||
seq2  ACTTATAGAGGAGAAAGTGGGGAAACGACTTGAAGATATGGGCACAGGGG  250

seq1  -AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
       ||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AAAAAATTCCTGAATAGAACAGCAATGGCTTGCGCTGTAAGATTGAGAAT  300

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGACAAATGGGACCTCATGAAACTGTAAAGCTTCTGCAAGGCAAAAGACA  350

seq1  CCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC  398
        |||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ATGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGGTCTTTACC  400

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAA  450

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| ||||||||||||||| | |||||| |||||||| ||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATTAACCCATT-AAAAATGGTGCTCAG  499

seq1  AGCTAAACAAAGAATT  514
      ||||||||||||||||
seq2  AGCTAAACAAAGAATT  515