BAC Information

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BAC

Clone NameB6Ng01-042G11
Chromosome3 (Build37)
Map Location 44,553,930 - 44,554,781
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042G11.bB6Ng01-042G11.g
ACCDH868793DH868794
length1,261915
definitionDH868793|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G11, 5' end.DH868794|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagttagtaatgcctggatgcctatatgcacattgatctatggcc
atttcttgggatatgaagatctcaccagtgatactgtccaaatagaagac
agggtccccatccttcagcagctattaaataccaatagatgttcaaatat
aggtaggacctcacagacccttgctgcattctggttggacttttgattga
cttgatattatggagttggtgattgtaagcaagcaccccatatccaaaag
tcaacacaccccagtactactcctcatgtaaaagttactagattctttca
acccttatttgcaaagaacactgaatctggaatgataagagtctggtata
tgtaacctatccacatctgaacactgtatgtcattttcaattgacatatg
ggtcagttgcaagtttttgcattcatcattatgcactacaaaaggaagct
tctgtgacaaatacagagagcatcacatatctatgggtatgaaataaata
tttaagatgcagtttgactgcatgaccacttagcaatacagcaaaagaag
attgttaacctgagcctatgatctcttcaggcatcatctttttaccaggt
taacctactataggatcatttgtattaactgtttaataaaaactattaaa
atattataatattatgaagttttagtaaataaaataagtctgactttccc
ccaagcattcagagattagccaaaacagacctcttcctaatgttctcata
gcacccatattacccaaggcacccactaaatttttgaagaataaagattc
ttttcttaaccatatccattttcaaatctatccatgaagaacattctatt
actgtttggagtaacctgaaaggaagtgcctggaagctgtccagtagtgt
gattgtaaaaaagaagaggtgcttgagaaaaatgaaatatatattttcag
aggtggctctgaattgataatcataagcataactacttgtcctgaaatgt
gggagtgactccccaaatctgtggtaaagtaagattactatggtaaggag
gaaaaatgaaacctattaattggaaatttccggaaaggaaagagtcattt
gcaagatagctttatatttgtccatcacattgtttgctgaaagagcaaga
tagatcttccaaaagtacccaggcaggaaggactggacttacctacttat
gacatcgaatgatcacatgtaagcatcagcaatgcaagtagtattctcta
aatcgatccgt
gaattcaaaacaaagcttttcttaatacattttcttgtttttaaaagaga
taggtccttgtcttgttatgaagggctatgacaacaccactagttcctct
ataggcccttgccagggctagcaaagcaagagagcctaagtagttgatgg
agcgatggtagagaaagaattaagtaaatcagtggtggagaaatggaaga
tgaagagaagtgcagtagtttgtatgctgtgaagttacacactgaagaca
acaaagtagttactgttcttgctcctagggaaatggtgtatgacattttt
ccaccaatagagtcaggaataaattcaagtttcagtgggcctatgccttc
ttccttggaagagtaggcccaaagggtgtgagaaaggaagagttgctcct
gtctcttgctagctgcagcattggataaactagctggggcaattctggag
aactgaccctgattgtgtaggtgtggaagatctggtgggatgacaagtgc
agatacaactatgccaagatcaaaagctttgaattggccaaatccaacct
atgagttctgagcatatgaggaggggcaggtattgaacatccaaagatca
aggtctccataacaaacagaaggcaacaacaaaatatttgagaggagtcc
gcatgtagattcagtactcatagtgtagcaaaagtcagagacttcaaatt
gggtaattaattctgtgcaataaacaattgaaaataaaaatgtacagaca
aaggatatactgtgtggcacagagtaacaaaccatagattccacaagatt
tgtttctctcgttttgctttgtttgtttgtatattttcttttggggagaa
gtttgcaagagcagatggcatatatgaaagtacaaggtacaataggattg
gggtgaatgatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44553930_44554781
seq2: B6Ng01-042G11.g_66_916

seq1  GAATTCAAAACAAAGCTTTTCTTAATACATTTTCTTGTTTTTAAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAAGCTTTTCTTAATACATTTTCTTGTTTTTAAAAGAGA  50

seq1  TAGGTCCTTGTCTTGTTATGAAGGGCTATGACAACACCACTAGTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTTGTCTTGTTATGAAGGGCTATGACAACACCACTAGTTCCTCT  100

seq1  ATAGGCCCTTGCCAGGGCTAGCAAAGCAAGAGAGCCTAAGTAGTTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCCTTGCCAGGGCTAGCAAAGCAAGAGAGCCTAAGTAGTTGATGG  150

seq1  AGCGATGGTAGAGAAAGAATTAAGTAAATCAGTGGTGGAGAAATGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGGTAGAGAAAGAATTAAGTAAATCAGTGGTGGAGAAATGGAAGA  200

seq1  TGAAGAGAAGTGCAGTAGTTTGTATGCTGTGAAGTTACACACTGAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAAGTGCAGTAGTTTGTATGCTGTGAAGTTACACACTGAAGACA  250

seq1  ACAAAGTAGTTACTGTTCTTGCTCCTAGGGAAATGGTGTATGACATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAGTTACTGTTCTTGCTCCTAGGGAAATGGTGTATGACATTTTT  300

seq1  CCACCAATAGAGTCAGGAATAAATTCAAGTTTCAGTGGGCCTATGCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATAGAGTCAGGAATAAATTCAAGTTTCAGTGGGCCTATGCCTTC  350

seq1  TTCCTTGGAAGAGTAGGCCCAAAGGGTGTGAGAAAGGAAGAGTTGCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGAAGAGTAGGCCCAAAGGGTGTGAGAAAGGAAGAGTTGCTCCT  400

seq1  GTCTCTTGCTAGCTGCAGCATTGGATAAACTAGCTGGGGCAATTCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGCTAGCTGCAGCATTGGATAAACTAGCTGGGGCAATTCTGGAG  450

seq1  AACTGACCCTGATTGTGTAGGTGTGGAAGATCTGGTGGGATGACAAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCCTGATTGTGTAGGTGTGGAAGATCTGGTGGGATGACAAGTGC  500

seq1  AGATACAACTATGCCAAGATCAAAAGCTTTGAATTGGCCAAATCCAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACTATGCCAAGATCAAAAGCTTTGAATTGGCCAAATCCAACCT  550

seq1  ATGAGTTCTGAGCATATGAGGAGGGGCAGGTATTGAACATCCAAAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTGAGCATATGAGGAGGGGCAGGTATTGAACATCCAAAGATCA  600

seq1  AGGTCTCCATAACAAACAGAAGGCAACAACAAAATATTTGAGAGGAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCATAACAAACAGAAGGCAACAACAAAATATTTGAGAGGAGTCC  650

seq1  GCATGTAGATTCAGTACTCATAGTGTAGCAAAAGTCAGAGACTTCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGATTCAGTACTCATAGTGTAGCAAAAGTCAGAGACTTCAAATT  700

seq1  GGGTAATTAATTCTGTGCAATAAACAATTGAAAATAAAAATGTACAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTAATTCTGTGCAATAAACAATTGAAAATAAAAATGTACAGACA  750

seq1  AAGGATATACTGTGTGGCACAGAGTAACAAACCATAGATTCCACAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATACTGTGTGGCACAGAGTAACAAACCATAGATTCCACAAGATT  800

seq1  TGTTTCTCTCGTTTTGCTTTGTTTGTTTGTATTATTTTCTTTTGGGGAGA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTCTCTCGTTTTGCTTTGTTTGTTTGTA-TATTTTCTTTTGGGGAGA  849

seq1  AG  852
      ||
seq2  AG  851