BAC Information

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BAC

Clone NameB6Ng01-042H20
Chromosome3 (Build37)
Map Location 81,567,232 - 81,568,310
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042H20.bB6Ng01-042H20.g
ACCDH868852DH868853
length1,0741,168
definitionDH868852|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H20, 5' end.DH868853|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcacttttcattgtatatttctgaatggattgttgcatcaac
tgctccttccatctctgatgtcttttcctttgtagacttggctgtggacc
attctctctatgcttccttttgcttgcttgattcactcatttcctatatt
tctgatatattatttcatagcatctgaatttccccacattttcccctctg
tggtttagaagctttcctccaagttgttacttcaatctcctgagttacct
tgttcttacctaggtcttgagtttatagatttaccgcagtttactgctca
ctcgaattccctgtgttttcactaatccttgttaaagagttggattctaa
aatagttattctgatatttcatgtaccttattgtcttttgttttcagtat
tgagcagttgtgagtctgtgtcagcctctgagtggcatgttctcatatgt
ttgtgcatgattctttagagtgttttgtacatctgtgaactagaatatgc
cctttagttttaatttttcacatattcttgttttttttaattaggtattt
tcctcttttacattttcaatgctatcccaaaggtcccccatacccacccc
cctaatcccctacccacccactccccctttttggccctggggttcccctg
tactggggcatataaagtttgcaagtccaatgggcctctctttgcagtga
tggccgactaggccatcttttgatacatatgcagctagagacaaaagctc
tggggtactggttagttcatattgttgttccacctatagggttgcagttc
cctttagctccttgggtaatttctctagctcctccattgggggccctttg
atccatccaatagatgactgtgagcatccacttctgtttgctaggccccg
gcatagtctcacacatattcttgtttatgttacacatttcttcatgatgc
ttaggtttttactcttactactactatggaaaaagccagtaccgtatatg
tatattccttggatgcatgcacaactttttattgtaaaagaggccttgac
tttgaagaagtcatggagggatgt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctcaacccta
taggtggaacaacattatgaactaccagtacccctggagctcttgactct
agctgcatatgtatcaaaagaatggctagtcgcatcactgggaaagagag
gccaatgactcgcgaacttggtgccgtacaggaaacgccaggccaaaagg
ggggagagtgggtgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81567232_81568310
seq2: B6Ng01-042H20.b_43_1116 (reverse)

seq1  ACATCCCTCATTGACTTTCTTTCAAAGTCATGGCCTCTTTTTACATTAAA  50
      |||||||||  ||||||   |||||||||| ||||||||||   || |||
seq2  ACATCCCTCCATGACTT--CTTCAAAGTCAAGGCCTCTTTTACAATAAAA  48

seq1  AGTTGTTGCATGCATCC-ATGTATATACATATACTGTAACTGGCTTTTTC  99
      ||||| ||||||||||| | | |||||||||||| || ||||||||||||
seq2  AGTTG-TGCATGCATCCAAGGAATATACATATACGGT-ACTGGCTTTTTC  96

seq1  CATAAGTAGTAGTAAGAGTAGAAACCTAAGCATCATGAAGAAATGTGTAA  149
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAT-AGTAGTAGTAAGAGTAAAAACCTAAGCATCATGAAGAAATGTGTAA  145

seq1  CATAAAACAAGAATATGTGTGAGACTATGCCGGGGCCTAGCAAACAGAAG  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-AAACAAGAATATGTGTGAGACTATGCCGGGGCCTAGCAAACAGAAG  194

seq1  TGGATGCTCACAGTCATCTATTGGATGGATCAAAGGGCCCCCAATGGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCACAGTCATCTATTGGATGGATCAAAGGGCCCCCAATGGAGG  244

seq1  AGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTG  294

seq1  GAACAACAATATGAACTAACCAGTACCCCAGAGCTTTTGTCTCTAGCTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAATATGAACTAACCAGTACCCCAGAGCTTTTGTCTCTAGCTGC  344

seq1  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCA  394

seq1  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACCCCAGGGCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACCCCAGGGCCAA  444

seq1  AAAGGGGGAGTGGGTGGGTAGGGGATTAGGGGGGTGGGTATGGGGGACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGAGTGGGTGGGTAGGGGATTAGGGGGGTGGGTATGGGGGACCT  494

seq1  TTGGGATAGCATTGAAAATGTAAAAGAGGAAAATACCTAATTAAAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAGCATTGAAAATGTAAAAGAGGAAAATACCTAATTAAAAAAAA  544

seq1  CAAGAATATGTGAAAAATTAAAACTAAAGGGCATATTCTAGTTCACAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATGTGAAAAATTAAAACTAAAGGGCATATTCTAGTTCACAGAT  594

seq1  GTACAAAACACTCTAAAGAATCATGCACAAACATATGAGAACATGCCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAACACTCTAAAGAATCATGCACAAACATATGAGAACATGCCACT  644

seq1  CAGAGGCTGACACAGACTCACAACTGCTCAATACTGAAAACAAAAGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTGACACAGACTCACAACTGCTCAATACTGAAAACAAAAGACAA  694

seq1  TAAGGTACATGAAATATCAGAATAACTATTTTAGAATCCAACTCTTTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACATGAAATATCAGAATAACTATTTTAGAATCCAACTCTTTAAC  744

seq1  AAGGATTAGTGAAAACACAGGGAATTCGAGTGAGCAGTAAACTGCGGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTAGTGAAAACACAGGGAATTCGAGTGAGCAGTAAACTGCGGTAA  794

seq1  ATCTATAAACTCAAGACCTAGGTAAGAACAAGGTAACTCAGGAGATTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAACTCAAGACCTAGGTAAGAACAAGGTAACTCAGGAGATTGAA  844

seq1  GTAACAACTTGGAGGAAAGCTTCTAAACCACAGAGGGGAAAATGTGGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACTTGGAGGAAAGCTTCTAAACCACAGAGGGGAAAATGTGGGGA  894

seq1  AATTCAGATGCTATGAAATAATATATCAGAAATATAGGAAATGAGTGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGATGCTATGAAATAATATATCAGAAATATAGGAAATGAGTGAAT  944

seq1  CAAGCAAGCAAAAGGAAGCATAGAGAGAATGGTCCACAGCCAAGTCTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAAAAGGAAGCATAGAGAGAATGGTCCACAGCCAAGTCTACA  994

seq1  AAGGAAAAGACATCAGAGATGGAAGGAGCAGTTGATGCAACAATCCATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGACATCAGAGATGGAAGGAGCAGTTGATGCAACAATCCATTC  1044

seq1  AGAAATATACAATGAAAAGTGAAGGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  AGAAATATACAATGAAAAGTGAAGGAATTC  1074